Wall clock time and date at job start Tue Mar 31 2020 05:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48495 * 109.47205 * 240.00116 * 3 2 1 5 5 H 1.48498 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46918 * 120.00263 * 3 2 1 7 7 C 1.39890 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00253 * 175.55417 * 7 2 1 9 9 C 1.41159 * 120.00112 * 355.55037 * 7 2 1 10 10 C 1.40866 * 120.16926 * 214.78508 * 9 7 2 11 11 C 1.36367 * 119.83339 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16928 * 0.02562 * 11 10 9 13 13 N 1.39243 * 119.83808 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99391 * 35.27394 * 13 12 11 15 15 O 1.21572 * 120.00309 * 355.98213 * 14 13 12 16 16 N 1.34775 * 119.99541 * 175.98294 * 14 13 12 17 17 C 1.47072 * 136.05835 * 359.62998 * 16 14 13 18 18 C 1.53236 * 88.08161 * 207.20148 * 17 16 14 19 19 F 1.39902 * 114.32695 * 220.46582 * 18 17 16 20 20 F 1.39904 * 114.01434 * 87.71726 * 18 17 16 21 21 C 1.47066 * 136.05666 * 180.02562 * 16 14 13 22 22 C 1.39488 * 120.33046 * 0.25401 * 12 11 10 23 23 C 1.36376 * 120.16578 * 359.48391 * 22 12 11 24 24 H 0.96996 * 119.99992 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.08119 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.91648 * 179.97438 * 11 10 9 27 27 H 0.96989 * 119.99991 * 215.54816 * 13 12 11 28 28 H 1.09002 * 113.46612 * 321.93390 * 17 16 14 29 29 H 1.08997 * 113.46597 * 92.37732 * 17 16 14 30 30 H 1.09005 * 113.46434 * 267.61822 * 21 16 14 31 31 H 1.08993 * 113.47047 * 38.00437 * 21 16 14 32 32 H 1.08003 * 119.91506 * 179.74967 * 22 12 11 33 33 H 1.07999 * 120.08468 * 180.25770 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6963 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0858 -1.2129 -0.0730 9 6 1.3057 -2.4322 0.0938 10 6 1.8650 -3.5185 0.7947 11 6 1.1805 -4.6948 0.8811 12 6 -0.0701 -4.8241 0.2771 13 7 -0.7627 -6.0286 0.3691 14 6 -0.6806 -6.7689 1.4924 15 8 0.0549 -6.4225 2.3963 16 7 -1.4139 -7.8932 1.6135 17 6 -2.3873 -8.6173 0.7821 18 6 -3.0062 -9.1634 2.0732 19 9 -3.3843 -10.5087 2.0069 20 9 -3.9892 -8.3364 2.6275 21 6 -1.5981 -8.9321 2.6379 22 6 -0.6278 -3.7548 -0.4237 23 6 0.0424 -2.5705 -0.5141 24 1 -0.4850 0.8400 0.0004 25 1 2.8334 -3.4201 1.2626 26 1 1.6082 -5.5287 1.4178 27 1 -1.3010 -6.3366 -0.3765 28 1 -3.0562 -7.9608 0.2256 29 1 -1.9361 -9.3880 0.1572 30 1 -0.9343 -9.7877 2.5127 31 1 -1.5963 -8.5430 3.6560 32 1 -1.5948 -3.8636 -0.8922 33 1 -0.3925 -1.7421 -1.0534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520187762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:26 Heat of formation + Delta-G solvation = -52.612371 kcal Electronic energy + Delta-G solvation = -21147.185477 eV Core-core repulsion = 17424.483119 eV Total energy + Delta-G solvation = -3722.702358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.16600 -47.56355 -40.36981 -38.42082 -36.94735 -34.47448 -32.95612 -29.89035 -29.50773 -28.23211 -26.85922 -24.80904 -22.59782 -21.42527 -20.71227 -19.55227 -18.42689 -17.88467 -17.32732 -17.13228 -16.60376 -16.13942 -15.46296 -15.17254 -14.79079 -14.38329 -14.03926 -13.85955 -13.74892 -13.58457 -13.00204 -12.90634 -12.67409 -12.59574 -12.14667 -11.72111 -11.37878 -11.15602 -11.05417 -10.89452 -10.74701 -10.20262 -9.63202 -9.51024 -9.28793 -9.07846 -8.92378 -7.56394 -6.87730 -6.62069 -4.34932 2.20435 2.66056 2.92958 3.07855 3.09380 3.10793 3.11494 3.14560 3.48338 3.96149 3.99004 4.26228 4.41621 4.69973 4.79506 4.85540 5.08780 5.25735 5.42908 5.63585 6.17065 6.39715 6.70803 6.80435 7.01467 7.12645 7.21596 7.34940 7.63285 7.80950 7.89279 8.06261 8.26615 8.32808 8.62173 8.81734 8.92300 9.00449 10.29149 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.046329 B = 0.003239 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.227248 B = 8643.629520 C = 8854.844844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.204 4.204 11 C -0.085 4.085 12 C 0.016 3.984 13 N -0.657 5.657 14 C 0.735 3.265 15 O -0.561 6.561 16 N -0.664 5.664 17 C 0.070 3.930 18 C 0.245 3.755 19 F -0.177 7.177 20 F -0.164 7.164 21 C 0.099 3.901 22 C -0.119 4.119 23 C -0.141 4.141 24 H 0.278 0.722 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.393 0.607 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 -15.191 -0.519 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.224 4.224 11 C -0.105 4.105 12 C -0.076 4.076 13 N -0.302 5.302 14 C 0.439 3.561 15 O -0.437 6.437 16 N -0.406 5.406 17 C -0.055 4.055 18 C 0.207 3.793 19 F -0.158 7.158 20 F -0.144 7.144 21 C -0.026 4.026 22 C -0.140 4.140 23 C -0.161 4.161 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.226 0.774 28 H 0.119 0.881 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.895 -14.516 0.151 15.668 hybrid contribution -0.284 0.481 -0.208 0.596 sum -6.179 -14.035 -0.057 15.335 Atomic orbital electron populations 1.69752 1.07279 1.28832 1.38043 1.25877 0.94948 1.01163 0.92550 0.86239 0.79786 0.80095 0.79761 1.19061 1.20442 1.19099 1.19468 0.94730 0.90228 1.44806 0.90614 1.17722 0.92277 0.91997 0.88216 1.20802 1.01261 0.94849 1.05511 1.20403 0.92717 0.97942 0.99468 1.17070 0.93843 0.84815 1.11871 1.42006 1.51578 1.21924 1.14713 1.15134 0.79697 0.77861 0.83416 1.90950 1.41519 1.70232 1.40963 1.48187 1.47455 1.23807 1.21172 1.23927 0.90572 0.96871 0.94114 1.21825 0.86177 0.73716 0.97574 1.93051 1.93021 1.32943 1.96753 1.93085 1.64242 1.70740 1.86377 1.23744 0.91071 0.91484 0.96319 1.20284 0.98332 0.92928 1.02428 1.21179 0.97331 0.95415 1.02136 0.91073 0.88520 0.87424 0.77427 0.88108 0.86782 0.86957 0.87868 0.89087 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.12 10.60 55.54 0.59 -20.53 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 3 Si 0.92 19.00 29.56 -169.99 -5.03 13.98 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.30 9.02 -37.86 -0.34 -12.64 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 10 C -0.20 -5.18 9.74 -39.26 -0.38 -5.56 16 11 C -0.09 -2.05 8.61 -39.79 -0.34 -2.39 16 12 C 0.02 0.36 6.30 -83.56 -0.53 -0.17 16 13 N -0.66 -11.70 5.31 -14.10 -0.07 -11.78 16 14 C 0.73 13.32 8.62 -86.92 -0.75 12.57 16 15 O -0.56 -12.63 14.54 5.30 0.08 -12.55 16 16 N -0.66 -8.57 3.69 -191.23 -0.71 -9.27 16 17 C 0.07 0.58 8.09 -8.64 -0.07 0.51 16 18 C 0.25 2.24 3.58 -26.36 -0.09 2.15 16 19 F -0.18 -1.55 17.45 2.25 0.04 -1.51 16 20 F -0.16 -1.91 17.44 2.25 0.04 -1.87 16 21 C 0.10 0.97 8.43 -8.52 -0.07 0.90 16 22 C -0.12 -2.71 9.90 -39.79 -0.39 -3.10 16 23 C -0.14 -3.60 8.62 -39.26 -0.34 -3.94 16 24 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 25 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 26 H 0.11 2.57 6.23 -52.49 -0.33 2.25 16 27 H 0.39 5.47 8.54 -40.82 -0.35 5.12 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.13 3.49 6.13 -52.49 -0.32 3.17 16 LS Contribution 297.51 15.07 4.48 4.48 Total: -1.00 -31.46 297.51 -7.66 -39.12 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.08 Total: 7.85 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -4.00 Total: -7.91 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.19 Total: -41.58 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.38 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.46 -7.66 -39.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520187762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.493 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds