Wall clock time and date at job start Tue Mar 31 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99448 * 2 1 4 4 H 1.48496 * 109.47377 * 266.81313 * 3 2 1 5 5 H 1.48507 * 109.47333 * 26.81565 * 3 2 1 6 6 H 1.48497 * 109.47028 * 146.81118 * 3 2 1 7 7 C 1.37874 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99728 * 353.40561 * 7 2 1 9 9 C 1.50693 * 120.00281 * 173.40133 * 7 2 1 10 10 H 1.09008 * 109.47091 * 57.58318 * 9 7 2 11 11 N 1.46503 * 109.47405 * 297.58848 * 9 7 2 12 12 C 1.34772 * 120.00318 * 154.99812 * 11 9 7 13 13 O 1.21279 * 120.00048 * 359.71819 * 12 11 9 14 14 C 1.50695 * 120.00061 * 179.97438 * 12 11 9 15 15 C 1.53003 * 109.47299 * 177.26186 * 14 12 11 16 16 N 1.46898 * 112.99780 * 293.62904 * 15 14 12 17 17 C 1.54036 * 113.81683 * 161.64595 * 15 14 12 18 18 O 1.44174 * 85.51858 * 223.19917 * 17 15 14 19 19 C 1.44180 * 93.33874 * 24.19016 * 18 17 15 20 20 C 1.53000 * 109.47546 * 177.58331 * 9 7 2 21 21 F 1.39892 * 109.47404 * 181.12392 * 20 9 7 22 22 F 1.39897 * 109.47101 * 301.12778 * 20 9 7 23 23 F 1.39902 * 109.46834 * 61.12368 * 20 9 7 24 24 H 0.96992 * 120.00483 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99465 * 334.99367 * 11 9 7 26 26 H 1.08995 * 109.47221 * 297.26624 * 14 12 11 27 27 H 1.09009 * 109.47289 * 57.26556 * 14 12 11 28 28 H 1.00904 * 110.99729 * 183.85621 * 16 15 14 29 29 H 1.00894 * 111.00587 * 307.81533 * 16 15 14 30 30 H 1.09006 * 113.86067 * 337.34197 * 17 15 14 31 31 H 1.08997 * 113.86688 * 109.04573 * 17 15 14 32 32 H 1.09000 * 113.86687 * 221.66160 * 19 18 17 33 33 H 1.08996 * 113.86451 * 89.96094 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5639 2.0076 -1.3978 5 1 1.4143 2.6712 0.6316 6 1 3.5112 1.4607 0.7664 7 6 2.0047 -1.1940 -0.0005 8 1 1.4701 -2.1263 0.1065 9 6 3.5041 -1.1982 -0.1505 10 1 3.9504 -0.5997 0.6438 11 7 3.8664 -0.6307 -1.4517 12 6 5.0784 -0.0682 -1.6277 13 8 5.8673 -0.0272 -0.7074 14 6 5.4513 0.5149 -2.9662 15 6 6.8424 1.1458 -2.8781 16 7 6.8856 2.3190 -1.9951 17 6 7.5118 1.3695 -4.2473 18 8 8.7064 0.8622 -3.6194 19 6 7.9707 0.1299 -2.6186 20 6 4.0219 -2.6350 -0.0587 21 9 5.4162 -2.6364 -0.1722 22 9 3.6538 -3.1854 1.1737 23 9 3.4690 -3.3969 -1.0935 24 1 -0.4850 0.8399 0.0004 25 1 3.2340 -0.6600 -2.1865 26 1 5.4573 -0.2746 -3.7176 27 1 4.7238 1.2771 -3.2459 28 1 7.7990 2.7477 -2.0079 29 1 6.1699 2.9853 -2.2436 30 1 7.1230 0.7281 -5.0382 31 1 7.5783 2.4174 -4.5398 32 1 8.4012 0.1947 -1.6194 33 1 7.7221 -0.8899 -2.9122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580044967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:51 Heat of formation + Delta-G solvation = -202.471328 kcal Electronic energy + Delta-G solvation = -23820.833320 eV Core-core repulsion = 19660.863365 eV Total energy + Delta-G solvation = -4159.969955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.10347 -46.61780 -46.58884 -40.85611 -38.76996 -34.91508 -33.66139 -32.48181 -30.38618 -28.69192 -26.61229 -25.98360 -25.01659 -21.56793 -20.13267 -19.29172 -18.22817 -17.57406 -17.04958 -16.72171 -16.42360 -16.33559 -16.25734 -15.45480 -15.15234 -14.57256 -14.34957 -13.90871 -13.53994 -13.49053 -13.24873 -13.05725 -12.95312 -12.82968 -12.79316 -12.69214 -12.52425 -12.05600 -11.65198 -11.43262 -11.16511 -10.65094 -10.51960 -10.18711 -9.91138 -9.89226 -9.31397 -8.96466 -8.67346 -8.41551 -6.51461 -4.64228 3.04930 3.11717 3.26195 3.32640 3.55451 3.62399 3.88633 4.10829 4.19539 4.39051 4.72040 4.91100 4.98499 4.99185 5.18002 5.21040 5.25548 5.35807 5.50402 5.56844 5.72632 5.79654 6.00476 6.09663 6.45319 6.90199 7.04838 7.11621 7.35968 7.85809 8.28859 8.51230 8.86235 9.02965 10.56960 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.007499 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.302013 B = 3733.156564 C = 4768.545855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.095 3.905 3 Si 0.882 3.118 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.539 4.539 8 H 0.094 0.906 9 C 0.205 3.795 10 H 0.091 0.909 11 N -0.721 5.721 12 C 0.501 3.499 13 O -0.515 6.515 14 C -0.141 4.141 15 C 0.082 3.918 16 N -0.804 5.804 17 C -0.001 4.001 18 O -0.387 6.387 19 C 0.057 3.943 20 C 0.442 3.558 21 F -0.194 7.194 22 F -0.186 7.186 23 F -0.190 7.190 24 H 0.274 0.726 25 H 0.400 0.600 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.347 0.653 29 H 0.343 0.657 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.366 2.911 -8.094 12.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.114 4.114 3 Si 0.709 3.291 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.577 4.577 8 H 0.112 0.888 9 C 0.102 3.898 10 H 0.109 0.891 11 N -0.375 5.375 12 C 0.287 3.713 13 O -0.391 6.391 14 C -0.181 4.181 15 C -0.013 4.013 16 N -0.334 5.334 17 C -0.081 4.081 18 O -0.306 6.306 19 C -0.020 4.020 20 C 0.387 3.613 21 F -0.176 7.176 22 F -0.167 7.167 23 F -0.172 7.172 24 H 0.084 0.916 25 H 0.236 0.764 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.887 2.546 -6.845 12.292 hybrid contribution -0.012 1.121 -1.305 1.721 sum 9.875 3.667 -8.150 13.319 Atomic orbital electron populations 1.69884 1.06417 1.28226 1.45290 1.24917 0.94762 0.99306 0.92420 0.86719 0.80624 0.82472 0.79291 1.19910 1.21469 1.17971 1.20799 0.86767 0.96529 1.53581 0.88838 1.20184 0.98716 0.84905 0.86022 0.89149 1.47443 1.15715 1.58988 1.15379 1.20489 0.82477 0.78589 0.89787 1.90695 1.49745 1.56200 1.42411 1.21847 0.97083 1.01647 0.97555 1.23397 0.94608 0.93594 0.89741 1.58338 1.09779 1.10090 1.55202 1.24935 0.85804 1.00164 0.97219 1.89646 1.26835 1.67090 1.46985 1.24135 0.89078 0.95182 0.93627 1.21517 0.74510 0.92306 0.73012 1.93135 1.31481 1.97171 1.95779 1.93103 1.91475 1.87686 1.44457 1.93084 1.85527 1.78975 1.59568 0.91617 0.76438 0.88217 0.88908 0.83836 0.84330 0.89911 0.89658 0.87735 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.57 13.96 55.43 0.77 -22.79 16 2 C 0.09 2.44 5.46 -17.82 -0.10 2.34 16 3 Si 0.88 19.98 26.13 -169.99 -4.44 15.54 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.26 -6.07 6.52 56.52 0.37 -5.70 16 7 C -0.54 -13.66 8.62 -34.44 -0.30 -13.95 16 8 H 0.09 2.60 7.99 -52.48 -0.42 2.18 16 9 C 0.21 4.62 1.41 -69.08 -0.10 4.53 16 10 H 0.09 2.20 6.30 -51.92 -0.33 1.87 16 11 N -0.72 -14.02 3.23 -54.93 -0.18 -14.20 16 12 C 0.50 9.13 6.88 -10.99 -0.08 9.05 16 13 O -0.52 -10.88 13.44 5.56 0.07 -10.80 16 14 C -0.14 -1.86 5.32 -27.88 -0.15 -2.01 16 15 C 0.08 1.04 0.96 -130.52 -0.13 0.92 16 16 N -0.80 -10.39 8.91 -4.62 -0.04 -10.44 16 17 C 0.00 -0.01 8.50 37.61 0.32 0.31 16 18 O -0.39 -5.28 12.36 -35.23 -0.44 -5.72 16 19 C 0.06 0.79 7.38 37.60 0.28 1.07 16 20 C 0.44 9.59 2.78 37.16 0.10 9.70 16 21 F -0.19 -4.13 15.72 2.25 0.04 -4.09 16 22 F -0.19 -4.12 17.00 2.25 0.04 -4.08 16 23 F -0.19 -4.02 16.95 2.25 0.04 -3.98 16 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.40 7.13 8.59 -40.82 -0.35 6.78 16 26 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 27 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 28 H 0.35 3.97 8.85 -39.29 -0.35 3.63 16 29 H 0.34 3.88 9.03 -39.29 -0.35 3.53 16 30 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 293.42 15.07 4.42 4.42 Total: -1.00 -29.64 293.42 -3.34 -32.99 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -3.49 Total: 11.21 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -0.14 Total: 11.94 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.55 Total: -47.43 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.36 Total: -16.52 kcal Atomic # 9 Polarization: -12.26 SS G_CDS: 0.11 Total: -12.15 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.44 Total: 15.54 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.64 -3.34 -32.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580044967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.486 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds