Wall clock time and date at job start Tue Mar 31 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99448 * 2 1 4 4 H 1.48496 * 109.47377 * 266.81313 * 3 2 1 5 5 H 1.48507 * 109.47333 * 26.81565 * 3 2 1 6 6 H 1.48497 * 109.47028 * 146.81118 * 3 2 1 7 7 C 1.37874 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99728 * 353.40561 * 7 2 1 9 9 C 1.50693 * 120.00281 * 173.40133 * 7 2 1 10 10 H 1.09008 * 109.47091 * 57.58318 * 9 7 2 11 11 N 1.46503 * 109.47405 * 297.58848 * 9 7 2 12 12 C 1.34772 * 120.00318 * 154.99812 * 11 9 7 13 13 O 1.21279 * 120.00048 * 359.71819 * 12 11 9 14 14 C 1.50695 * 120.00061 * 179.97438 * 12 11 9 15 15 C 1.53003 * 109.47299 * 177.26186 * 14 12 11 16 16 N 1.46898 * 112.99780 * 293.62904 * 15 14 12 17 17 C 1.54036 * 113.81683 * 161.64595 * 15 14 12 18 18 O 1.44174 * 85.51858 * 223.19917 * 17 15 14 19 19 C 1.44180 * 93.33874 * 24.19016 * 18 17 15 20 20 C 1.53000 * 109.47546 * 177.58331 * 9 7 2 21 21 F 1.39892 * 109.47404 * 181.12392 * 20 9 7 22 22 F 1.39897 * 109.47101 * 301.12778 * 20 9 7 23 23 F 1.39902 * 109.46834 * 61.12368 * 20 9 7 24 24 H 0.96992 * 120.00483 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99465 * 334.99367 * 11 9 7 26 26 H 1.08995 * 109.47221 * 297.26624 * 14 12 11 27 27 H 1.09009 * 109.47289 * 57.26556 * 14 12 11 28 28 H 1.00904 * 110.99729 * 183.85621 * 16 15 14 29 29 H 1.00894 * 111.00587 * 307.81533 * 16 15 14 30 30 H 1.09006 * 113.86067 * 337.34197 * 17 15 14 31 31 H 1.08997 * 113.86688 * 109.04573 * 17 15 14 32 32 H 1.09000 * 113.86687 * 221.66160 * 19 18 17 33 33 H 1.08996 * 113.86451 * 89.96094 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5639 2.0076 -1.3978 5 1 1.4143 2.6712 0.6316 6 1 3.5112 1.4607 0.7664 7 6 2.0047 -1.1940 -0.0005 8 1 1.4701 -2.1263 0.1065 9 6 3.5041 -1.1982 -0.1505 10 1 3.9504 -0.5997 0.6438 11 7 3.8664 -0.6307 -1.4517 12 6 5.0784 -0.0682 -1.6277 13 8 5.8673 -0.0272 -0.7074 14 6 5.4513 0.5149 -2.9662 15 6 6.8424 1.1458 -2.8781 16 7 6.8856 2.3190 -1.9951 17 6 7.5118 1.3695 -4.2473 18 8 8.7064 0.8622 -3.6194 19 6 7.9707 0.1299 -2.6186 20 6 4.0219 -2.6350 -0.0587 21 9 5.4162 -2.6364 -0.1722 22 9 3.6538 -3.1854 1.1737 23 9 3.4690 -3.3969 -1.0935 24 1 -0.4850 0.8399 0.0004 25 1 3.2340 -0.6600 -2.1865 26 1 5.4573 -0.2746 -3.7176 27 1 4.7238 1.2771 -3.2459 28 1 7.7990 2.7477 -2.0079 29 1 6.1699 2.9853 -2.2436 30 1 7.1230 0.7281 -5.0382 31 1 7.5783 2.4174 -4.5398 32 1 8.4012 0.1947 -1.6194 33 1 7.7221 -0.8899 -2.9122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580044967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:50 Heat of formation + Delta-G solvation = -226.844220 kcal Electronic energy + Delta-G solvation = -23821.890208 eV Core-core repulsion = 19660.863365 eV Total energy + Delta-G solvation = -4161.026843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.87543 -48.39110 -48.35390 -41.87273 -40.21849 -36.61417 -34.71582 -34.36245 -31.76077 -30.09183 -27.51478 -27.10818 -26.89861 -23.29568 -21.60639 -20.40689 -19.93288 -19.33335 -18.68058 -18.36417 -18.05644 -17.44849 -17.28211 -16.79543 -16.47656 -15.95427 -15.49811 -15.41332 -15.25676 -15.16061 -14.82981 -14.76422 -14.57384 -14.51532 -14.49839 -14.13436 -13.71687 -13.59456 -13.05451 -12.88501 -12.47581 -12.36462 -12.04185 -11.87957 -11.50008 -11.02366 -10.84969 -10.69545 -10.04976 -9.59781 -8.50166 -6.67331 1.27048 1.36580 1.50329 1.71711 2.03905 2.22502 2.23174 2.67896 2.95246 3.17227 3.23050 3.40058 3.44577 3.60209 3.72482 4.04596 4.22405 4.38015 4.49315 4.57899 4.65690 4.75302 4.85475 4.99652 5.03958 5.14531 5.48803 5.90785 6.16991 6.44683 6.51956 6.77353 7.02838 7.41301 8.62358 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.007499 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.302013 B = 3733.156564 C = 4768.545855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.059 3.941 3 Si 0.938 3.062 4 H -0.240 1.240 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.216 3.784 10 H 0.073 0.927 11 N -0.721 5.721 12 C 0.497 3.503 13 O -0.546 6.546 14 C -0.134 4.134 15 C 0.080 3.920 16 N -0.823 5.823 17 C 0.011 3.989 18 O -0.405 6.405 19 C 0.050 3.950 20 C 0.445 3.555 21 F -0.189 7.189 22 F -0.191 7.191 23 F -0.185 7.185 24 H 0.278 0.722 25 H 0.411 0.589 26 H 0.131 0.869 27 H 0.116 0.884 28 H 0.353 0.647 29 H 0.352 0.648 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.227 4.161 -10.205 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.763 3.237 4 H -0.164 1.164 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.110 3.890 10 H 0.091 0.909 11 N -0.376 5.376 12 C 0.284 3.716 13 O -0.423 6.423 14 C -0.174 4.174 15 C -0.015 4.015 16 N -0.354 5.354 17 C -0.068 4.068 18 O -0.324 6.324 19 C -0.027 4.027 20 C 0.389 3.611 21 F -0.171 7.171 22 F -0.172 7.172 23 F -0.167 7.167 24 H 0.088 0.912 25 H 0.248 0.752 26 H 0.149 0.851 27 H 0.134 0.866 28 H 0.168 0.832 29 H 0.167 0.833 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.750 3.802 -9.002 14.528 hybrid contribution -0.236 0.658 -0.611 0.929 sum 10.514 4.460 -9.613 14.928 Atomic orbital electron populations 1.69967 1.07846 1.29266 1.47027 1.25500 0.95185 1.01995 0.91949 0.85854 0.78277 0.78886 0.80725 1.16384 1.21725 1.19925 1.20736 0.88103 0.95347 1.53952 0.92231 1.19734 0.96702 0.85306 0.87253 0.90898 1.47091 1.16882 1.59327 1.14257 1.21336 0.81186 0.77572 0.91464 1.90696 1.50378 1.57103 1.44086 1.21926 0.97797 1.02963 0.94684 1.23401 0.93804 0.93101 0.91191 1.58316 1.10585 1.10595 1.55943 1.25078 0.83665 1.01851 0.96233 1.89634 1.28335 1.67254 1.47193 1.24089 0.89878 0.95937 0.92757 1.21397 0.74675 0.92067 0.72961 1.93144 1.31049 1.97144 1.95749 1.93092 1.91558 1.87742 1.44851 1.93089 1.85506 1.78812 1.59299 0.91203 0.75218 0.85093 0.86588 0.83221 0.83299 0.87631 0.87630 0.90109 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.65 13.96 21.45 0.30 -49.35 16 2 C 0.06 3.02 5.46 84.65 0.46 3.48 16 3 Si 0.94 40.42 26.13 68.60 1.79 42.21 16 4 H -0.24 -8.99 7.11 99.48 0.71 -8.28 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.62 6.52 99.48 0.65 -11.97 16 7 C -0.54 -27.78 8.62 25.60 0.22 -27.56 16 8 H 0.06 3.41 7.99 -2.91 -0.02 3.38 16 9 C 0.22 9.62 1.41 44.24 0.06 9.68 16 10 H 0.07 3.55 6.30 -2.38 -0.01 3.53 16 11 N -0.72 -26.60 3.23 -446.11 -1.44 -28.05 16 12 C 0.50 16.85 6.88 87.66 0.60 17.46 16 13 O -0.55 -22.30 13.44 -3.03 -0.04 -22.34 16 14 C -0.13 -2.99 5.32 29.85 0.16 -2.83 16 15 C 0.08 1.78 0.96 4.23 0.00 1.79 16 16 N -0.82 -19.19 8.91 -179.56 -1.60 -20.79 16 17 C 0.01 0.18 8.50 72.27 0.61 0.80 16 18 O -0.40 -10.08 12.36 -148.98 -1.84 -11.92 16 19 C 0.05 1.32 7.38 72.27 0.53 1.85 16 20 C 0.44 19.15 2.78 71.98 0.20 19.35 16 21 F -0.19 -7.91 15.72 44.97 0.71 -7.20 16 22 F -0.19 -8.52 17.00 44.97 0.76 -7.76 16 23 F -0.19 -7.73 16.95 44.97 0.76 -6.96 16 24 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.41 13.58 8.59 -92.71 -0.80 12.79 16 26 H 0.13 2.16 8.05 -2.39 -0.02 2.14 16 27 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.35 7.38 8.85 -89.69 -0.79 6.59 16 29 H 0.35 6.84 9.03 -89.70 -0.81 6.03 16 30 H 0.11 1.35 8.04 -2.38 -0.02 1.33 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.09 2.15 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -64.02 293.42 1.00 -63.02 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -1.26 Total: 25.11 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 2.86 Total: 24.02 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -2.74 Total: -98.18 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.88 Total: -34.26 kcal Atomic # 9 Polarization: -24.15 SS G_CDS: 2.23 Total: -21.92 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.79 Total: 42.21 kcal Total: -64.02 1.00 -63.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580044967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.820 kcal (2) G-P(sol) polarization free energy of solvation -64.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds