Wall clock time and date at job start Tue Mar 31 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00218 * 2 1 4 4 H 1.48506 * 109.47229 * 264.79987 * 3 2 1 5 5 H 1.48507 * 109.46825 * 24.79460 * 3 2 1 6 6 H 1.48495 * 109.47293 * 144.79606 * 3 2 1 7 7 C 1.37881 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99790 * 4.86122 * 7 2 1 9 9 C 1.50699 * 119.99890 * 184.85453 * 7 2 1 10 10 H 1.08998 * 109.47606 * 334.93650 * 9 7 2 11 11 N 1.46501 * 109.46808 * 94.93777 * 9 7 2 12 12 C 1.34774 * 119.99794 * 205.27027 * 11 9 7 13 13 O 1.21281 * 120.00163 * 359.73011 * 12 11 9 14 14 C 1.50701 * 119.99960 * 179.72388 * 12 11 9 15 15 C 1.52997 * 109.47121 * 184.86853 * 14 12 11 16 16 N 1.46898 * 113.00251 * 301.49650 * 15 14 12 17 17 C 1.54034 * 113.81666 * 169.67041 * 15 14 12 18 18 O 1.44445 * 85.42556 * 223.23652 * 17 15 14 19 19 C 1.44177 * 93.37863 * 24.09119 * 18 17 15 20 20 C 1.53001 * 109.46890 * 214.93473 * 9 7 2 21 21 F 1.39902 * 109.47278 * 294.93489 * 20 9 7 22 22 F 1.39895 * 109.47474 * 54.93679 * 20 9 7 23 23 F 1.39904 * 109.46950 * 174.93238 * 20 9 7 24 24 H 0.96998 * 119.99906 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99816 * 24.99682 * 11 9 7 26 26 H 1.09005 * 109.47182 * 304.86999 * 14 12 11 27 27 H 1.08996 * 109.47029 * 64.86972 * 14 12 11 28 28 H 1.00898 * 111.00225 * 184.93343 * 16 15 14 29 29 H 1.00901 * 111.00026 * 308.88493 * 16 15 14 30 30 H 1.09002 * 113.86383 * 337.34075 * 17 15 14 31 31 H 1.09003 * 113.86784 * 109.04573 * 17 15 14 32 32 H 1.09004 * 113.86053 * 221.77117 * 19 18 17 33 33 H 1.08993 * 113.86923 * 90.06589 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6066 1.9830 -1.3944 5 1 1.3959 2.6819 0.5872 6 1 3.4874 1.4744 0.8071 7 6 2.0045 -1.1941 0.0005 8 1 1.4675 -2.1277 -0.0783 9 6 3.5075 -1.1963 0.1110 10 1 3.9003 -0.2486 -0.2572 11 7 3.8938 -1.3734 1.5130 12 6 5.0856 -0.9172 1.9464 13 8 5.8404 -0.3645 1.1746 14 6 5.4804 -1.0939 3.3900 15 6 6.8131 -0.3868 3.6444 16 7 7.8996 -0.8854 2.7908 17 6 7.1893 -0.2863 5.1348 18 8 7.5765 1.0707 4.8264 19 6 6.7053 1.1493 3.6803 20 6 4.0785 -2.3440 -0.7243 21 9 3.6669 -3.5658 -0.1810 22 9 3.6149 -2.2389 -2.0400 23 9 5.4759 -2.2768 -0.7155 24 1 -0.4850 0.8400 -0.0004 25 1 3.2900 -1.8155 2.1303 26 1 4.7121 -0.6631 4.0321 27 1 5.5847 -2.1561 3.6107 28 1 8.7792 -0.4572 3.0378 29 1 7.9621 -1.8915 2.8357 30 1 6.3371 -0.3590 5.8105 31 1 8.0210 -0.9287 5.4240 32 1 7.1540 1.6431 2.8184 33 1 5.7051 1.5160 3.9109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580044968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:53 Heat of formation + Delta-G solvation = -203.305323 kcal Electronic energy + Delta-G solvation = -23676.281846 eV Core-core repulsion = 19516.275726 eV Total energy + Delta-G solvation = -4160.006119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.098 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.02559 -46.54849 -46.50805 -40.81012 -38.66332 -34.79889 -33.58464 -32.55019 -30.34699 -28.65161 -26.62643 -26.00248 -24.93180 -21.54703 -20.03882 -19.27390 -18.18633 -17.50416 -16.96663 -16.67035 -16.43097 -16.40970 -16.16311 -15.42486 -15.02546 -14.68163 -14.27755 -13.97231 -13.46457 -13.42066 -13.05915 -12.98423 -12.92694 -12.78246 -12.72595 -12.66018 -12.46929 -12.06200 -11.75369 -11.29992 -11.15955 -10.67631 -10.50151 -10.15377 -9.90999 -9.80423 -9.26823 -8.96262 -8.54949 -8.32271 -6.53759 -4.68208 3.09911 3.18699 3.25869 3.27832 3.56500 3.64506 3.96391 4.09149 4.21571 4.40953 4.73830 4.87673 4.95597 5.18595 5.21001 5.21440 5.33420 5.34614 5.53337 5.65821 5.72209 5.80785 5.97028 6.05796 6.34442 6.91111 7.10697 7.22012 7.42610 7.85909 8.37956 8.51527 8.96195 9.02734 10.54891 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.007009 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.315421 B = 3993.899295 C = 4901.017095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.099 3.901 3 Si 0.868 3.132 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.538 4.538 8 H 0.092 0.908 9 C 0.207 3.793 10 H 0.088 0.912 11 N -0.719 5.719 12 C 0.497 3.503 13 O -0.512 6.512 14 C -0.139 4.139 15 C 0.084 3.916 16 N -0.796 5.796 17 C -0.003 4.003 18 O -0.385 6.385 19 C 0.049 3.951 20 C 0.436 3.564 21 F -0.194 7.194 22 F -0.183 7.183 23 F -0.194 7.194 24 H 0.275 0.725 25 H 0.398 0.602 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.344 0.656 29 H 0.343 0.657 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.750 -2.244 8.563 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.111 4.111 3 Si 0.693 3.307 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.575 4.575 8 H 0.110 0.890 9 C 0.103 3.897 10 H 0.106 0.894 11 N -0.372 5.372 12 C 0.282 3.718 13 O -0.386 6.386 14 C -0.180 4.180 15 C -0.011 4.011 16 N -0.325 5.325 17 C -0.083 4.083 18 O -0.304 6.304 19 C -0.028 4.028 20 C 0.381 3.619 21 F -0.176 7.176 22 F -0.165 7.165 23 F -0.175 7.175 24 H 0.085 0.915 25 H 0.233 0.767 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.914 -1.254 7.460 12.471 hybrid contribution 0.331 -0.127 1.021 1.081 sum 10.245 -1.382 8.481 13.372 Atomic orbital electron populations 1.69858 1.06420 1.28338 1.44827 1.24996 0.94800 0.99270 0.92001 0.86933 0.80763 0.82797 0.80179 1.19094 1.20633 1.17747 1.20739 0.86453 0.96321 1.54011 0.89003 1.19932 0.97546 0.92021 0.80225 0.89412 1.47367 1.17911 1.59963 1.11936 1.20494 0.82070 0.79677 0.89576 1.90727 1.50374 1.41166 1.56343 1.21843 0.96926 1.02615 0.96573 1.23369 0.92406 0.96032 0.89314 1.58305 1.06851 1.10888 1.56494 1.25004 1.00220 0.84683 0.98364 1.89684 1.61361 1.31479 1.47863 1.24194 0.94875 0.95173 0.88608 1.21778 0.75028 0.85236 0.79891 1.93058 1.90326 1.48298 1.85906 1.93101 1.88736 1.96197 1.38462 1.93155 1.31336 1.96519 1.96531 0.91497 0.76659 0.88491 0.88874 0.84180 0.84335 0.89889 0.89609 0.87969 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.49 13.96 55.43 0.77 -22.71 16 2 C 0.10 2.56 5.47 -17.82 -0.10 2.47 16 3 Si 0.87 19.93 26.99 -169.99 -4.59 15.35 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.25 -5.82 6.82 56.52 0.39 -5.43 16 7 C -0.54 -13.58 8.52 -34.44 -0.29 -13.87 16 8 H 0.09 2.52 8.00 -52.49 -0.42 2.10 16 9 C 0.21 4.68 1.71 -69.08 -0.12 4.56 16 10 H 0.09 2.13 4.73 -51.93 -0.25 1.89 16 11 N -0.72 -13.79 4.91 -54.93 -0.27 -14.06 16 12 C 0.50 8.96 7.28 -10.99 -0.08 8.88 16 13 O -0.51 -10.90 13.48 5.56 0.07 -10.83 16 14 C -0.14 -1.76 5.26 -27.88 -0.15 -1.91 16 15 C 0.08 1.05 0.96 -130.52 -0.13 0.92 16 16 N -0.80 -10.10 8.22 -4.62 -0.04 -10.14 16 17 C 0.00 -0.03 8.51 37.64 0.32 0.29 16 18 O -0.39 -5.25 12.37 -35.23 -0.44 -5.69 16 19 C 0.05 0.67 8.13 37.64 0.31 0.98 16 20 C 0.44 9.70 2.83 37.16 0.11 9.80 16 21 F -0.19 -4.14 16.93 2.25 0.04 -4.10 16 22 F -0.18 -4.20 16.89 2.25 0.04 -4.17 16 23 F -0.19 -4.28 15.85 2.25 0.04 -4.24 16 24 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.40 6.80 8.59 -40.82 -0.35 6.45 16 26 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.34 3.92 8.85 -39.29 -0.35 3.57 16 29 H 0.34 3.77 9.02 -39.29 -0.35 3.42 16 30 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -29.97 295.58 -3.45 -33.41 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -3.40 Total: 10.60 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -0.13 Total: 12.12 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.47 Total: -46.92 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.36 Total: -16.52 kcal Atomic # 9 Polarization: -12.62 SS G_CDS: 0.11 Total: -12.51 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.59 Total: 15.35 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.97 -3.45 -33.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580044968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.892 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds