Wall clock time and date at job start Tue Mar 31 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99981 * 2 1 4 4 N 1.46499 * 109.47211 * 125.00233 * 3 2 1 5 5 C 1.46497 * 120.00088 * 89.19476 * 4 3 2 6 6 C 1.50703 * 109.46968 * 269.99753 * 5 4 3 7 7 H 1.08000 * 119.99826 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99905 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00095 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99907 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47243 * 270.00324 * 10 8 6 12 12 H 1.48502 * 109.47331 * 150.00153 * 10 8 6 13 13 H 1.48501 * 109.47192 * 29.99867 * 10 8 6 14 14 C 1.34778 * 119.99778 * 269.18937 * 4 3 2 15 15 O 1.21281 * 119.99950 * 175.15523 * 14 4 3 16 16 C 1.50704 * 120.00124 * 355.16547 * 14 4 3 17 17 H 1.09002 * 110.86058 * 53.78790 * 16 14 4 18 18 C 1.54737 * 110.97018 * 289.98925 * 16 14 4 19 19 C 1.51694 * 102.54644 * 217.66783 * 18 16 14 20 20 C 1.47468 * 125.86102 * 195.39150 * 19 18 16 21 21 O 1.21475 * 120.00431 * 359.97438 * 20 19 18 22 22 O 1.34765 * 119.99804 * 180.02562 * 20 19 18 23 23 N 1.29051 * 108.26868 * 15.38837 * 19 18 16 24 24 O 1.41384 * 112.88238 * 0.32277 * 23 19 18 25 25 H 1.07998 * 119.99934 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00033 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99573 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.47358 * 4.99618 * 3 2 1 29 29 H 1.09005 * 109.46574 * 244.99612 * 3 2 1 30 30 H 1.08997 * 109.46900 * 150.00006 * 5 4 3 31 31 H 1.08995 * 109.47665 * 29.99861 * 5 4 3 32 32 H 0.97004 * 119.99611 * 359.97438 * 9 8 6 33 33 H 1.09000 * 110.79156 * 335.93157 * 18 16 14 34 34 H 1.08998 * 110.79446 * 99.21221 * 18 16 14 35 35 H 0.96698 * 116.99702 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3534 0.8094 0.9743 6 6 4.3710 -0.6573 1.3199 7 1 3.4605 -1.1508 1.6263 8 6 5.5496 -1.3690 1.2458 9 7 6.6586 -0.7676 0.8741 10 14 5.5715 -3.1868 1.6749 11 1 5.8534 -3.3502 3.1238 12 1 6.6279 -3.8692 0.8851 13 1 4.2507 -3.7864 1.3570 14 6 2.5988 1.8373 2.3167 15 8 3.3375 1.7798 3.2769 16 6 1.2391 2.4736 2.4492 17 1 0.4580 1.7950 2.1063 18 6 1.1799 3.8177 1.6848 19 6 0.3281 4.6788 2.5980 20 6 -0.3193 5.9514 2.2292 21 8 -0.1905 6.3952 1.1058 22 8 -1.0530 6.6226 3.1388 23 7 0.2672 4.1064 3.7530 24 8 0.9972 2.8968 3.8063 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 5.0285 1.3476 1.6396 31 1 4.6772 0.9434 -0.0578 32 1 6.6473 0.1765 0.6517 33 1 2.1772 4.2427 1.5716 34 1 0.7030 3.6896 0.7131 35 1 -1.4576 7.4522 2.8506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588463280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:09 Heat of formation + Delta-G solvation = -66.890468 kcal Electronic energy + Delta-G solvation = -22231.362267 eV Core-core repulsion = 18619.128280 eV Total energy + Delta-G solvation = -3612.233987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24176 -40.26526 -38.73702 -36.68782 -36.00839 -33.61731 -33.45133 -32.34231 -31.28503 -27.32359 -26.08522 -25.69333 -24.38036 -22.66702 -20.88303 -20.01832 -19.28455 -18.58103 -17.83433 -17.22561 -17.03724 -16.28187 -16.17273 -15.58569 -15.18308 -14.93625 -14.13478 -13.96568 -13.76159 -13.62873 -13.36493 -13.21598 -12.87342 -12.60598 -12.23332 -12.09058 -11.80403 -11.64555 -11.46842 -11.26452 -11.17548 -10.82295 -10.63190 -10.22116 -10.15630 -9.39789 -9.24167 -9.17555 -8.44304 -7.88707 -6.44724 -4.17485 0.31913 1.84493 2.23276 2.31982 2.62384 2.91912 3.40892 3.44642 3.53370 3.59579 3.91622 4.09412 4.31800 4.48375 4.54177 4.75546 4.88619 5.03741 5.12019 5.27327 5.29144 5.30806 5.51956 5.70467 5.78337 6.10026 6.50939 6.64567 6.79285 6.83475 6.95694 7.15215 7.26017 7.92432 7.96919 8.33841 8.61574 8.75354 9.51495 10.92729 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026829 B = 0.004307 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.381056 B = 6499.138543 C = 6777.881315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.130 3.870 4 N -0.582 5.582 5 C 0.237 3.763 6 C -0.606 4.606 7 H 0.055 0.945 8 C 0.021 3.979 9 N -0.908 5.908 10 Si 1.073 2.927 11 H -0.286 1.286 12 H -0.284 1.284 13 H -0.289 1.289 14 C 0.514 3.486 15 O -0.506 6.506 16 C 0.023 3.977 17 H 0.118 0.882 18 C -0.119 4.119 19 C 0.048 3.952 20 C 0.568 3.432 21 O -0.485 6.485 22 O -0.494 6.494 23 N -0.202 5.202 24 O -0.139 6.139 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.268 0.732 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.210 11.118 -2.783 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.168 4.168 3 C 0.007 3.993 4 N -0.315 5.315 5 C 0.118 3.882 6 C -0.644 4.644 7 H 0.073 0.927 8 C -0.183 4.183 9 N -0.544 5.544 10 Si 0.901 3.099 11 H -0.213 1.213 12 H -0.209 1.209 13 H -0.215 1.215 14 C 0.297 3.703 15 O -0.380 6.380 16 C -0.039 4.039 17 H 0.136 0.864 18 C -0.159 4.159 19 C -0.144 4.144 20 C 0.408 3.592 21 O -0.369 6.369 22 O -0.305 6.305 23 N 0.056 4.944 24 O -0.164 6.164 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.144 0.856 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -14.909 9.541 -1.184 17.740 hybrid contribution -1.082 1.589 -1.157 2.244 sum -15.991 11.130 -2.341 19.623 Atomic orbital electron populations 1.23761 0.95703 1.01494 1.03527 1.23626 0.95852 1.00374 0.96962 1.20791 0.92418 0.94917 0.91206 1.47990 1.15208 1.59276 1.09025 1.19464 0.76564 0.95405 0.96745 1.22244 0.97793 0.94017 1.50385 0.92687 1.25791 0.91830 1.06469 0.94216 1.70788 1.28485 1.13019 1.42130 0.83483 0.75385 0.74200 0.76847 1.21305 1.20924 1.21514 1.19534 0.86440 0.80236 0.84084 1.90764 1.53938 1.56674 1.36617 1.23896 0.99936 0.96660 0.83443 0.86423 1.22864 1.01885 0.90502 1.00621 1.24629 0.99275 0.95111 0.95409 1.19109 0.75840 0.82054 0.82199 1.90987 1.58089 1.66733 1.21100 1.84650 1.61885 1.39770 1.44206 1.78547 1.02595 0.94861 1.18357 1.91465 1.70831 1.30609 1.23498 0.88363 0.89199 0.85564 0.91244 0.89037 0.94724 0.95493 0.92216 0.86365 0.85954 0.71694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.44 13.90 29.01 0.40 -2.04 16 2 C -0.15 -2.19 9.81 -36.03 -0.35 -2.54 16 3 C 0.13 1.88 5.59 -5.20 -0.03 1.85 16 4 N -0.58 -11.37 2.44 -176.44 -0.43 -11.80 16 5 C 0.24 5.78 4.48 -5.19 -0.02 5.75 16 6 C -0.61 -16.50 9.22 -34.44 -0.32 -16.82 16 7 H 0.05 1.52 7.45 -52.49 -0.39 1.12 16 8 C 0.02 0.60 5.46 -17.82 -0.10 0.51 16 9 N -0.91 -26.91 13.65 55.43 0.76 -26.15 16 10 Si 1.07 25.13 29.90 -169.99 -5.08 20.04 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.51 10.36 6.99 -10.98 -0.08 10.29 16 15 O -0.51 -12.83 16.22 -13.30 -0.22 -13.05 16 16 C 0.02 0.35 3.21 -26.97 -0.09 0.26 16 17 H 0.12 1.54 7.39 -51.93 -0.38 1.15 16 18 C -0.12 -1.39 5.54 -26.48 -0.15 -1.54 16 19 C 0.05 0.57 7.30 -79.51 -0.58 -0.01 16 20 C 0.57 5.63 8.34 34.49 0.29 5.92 16 21 O -0.49 -5.51 17.74 -19.24 -0.34 -5.85 16 22 O -0.49 -3.61 13.43 -40.67 -0.55 -4.16 16 23 N -0.20 -2.93 12.51 35.26 0.44 -2.49 16 24 O -0.14 -2.42 11.82 -30.22 -0.36 -2.78 16 25 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 26 H 0.09 0.86 7.84 -52.49 -0.41 0.45 16 27 H 0.13 2.20 7.54 -52.48 -0.40 1.81 16 28 H 0.07 0.76 4.22 -51.93 -0.22 0.54 16 29 H 0.09 1.26 7.90 -51.93 -0.41 0.84 16 30 H 0.03 0.95 7.36 -51.93 -0.38 0.57 16 31 H 0.03 0.65 7.77 -51.93 -0.40 0.24 16 32 H 0.27 7.82 7.22 -40.82 -0.29 7.53 16 33 H 0.12 1.41 7.90 -51.93 -0.41 1.00 16 34 H 0.12 1.05 6.74 -51.93 -0.35 0.70 16 35 H 0.42 0.74 9.11 45.56 0.42 1.15 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -35.57 315.38 -4.90 -40.47 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -2.85 Total: -0.62 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.02 Total: 1.64 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.77 Total: -40.44 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.46 Total: -25.84 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.57 -4.90 -40.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588463280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.425 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds