Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47004 * 2 1 4 4 H 1.08999 * 109.46934 * 305.00086 * 3 2 1 5 5 C 1.50701 * 109.46724 * 185.00290 * 3 2 1 6 6 H 1.08004 * 119.99238 * 239.99791 * 5 3 2 7 7 C 1.37876 * 120.00286 * 59.99888 * 5 3 2 8 8 N 1.31514 * 119.99938 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99943 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47372 * 89.99877 * 9 7 5 11 11 H 1.48498 * 109.47365 * 210.00141 * 9 7 5 12 12 H 1.48502 * 109.47281 * 330.00101 * 9 7 5 13 13 O 1.45196 * 109.47355 * 65.00213 * 3 2 1 14 14 C 1.34814 * 116.99849 * 269.99957 * 13 3 2 15 15 O 1.21543 * 119.99964 * 359.97438 * 14 13 3 16 16 C 1.47063 * 119.99592 * 179.97438 * 14 13 3 17 17 C 1.37085 * 126.64546 * 179.68606 * 16 14 13 18 18 C 1.40922 * 105.46258 * 179.91833 * 17 16 14 19 19 C 1.47639 * 126.27172 * 180.13296 * 18 17 16 20 20 O 1.21477 * 119.99687 * 0.23197 * 19 18 17 21 21 O 1.34712 * 120.00124 * 180.23802 * 19 18 17 22 22 N 1.32010 * 107.46291 * 0.34855 * 18 17 16 23 23 N 1.28461 * 110.50228 * 359.77900 * 22 18 17 24 24 C 1.46492 * 125.06627 * 180.02562 * 23 22 18 25 25 H 1.09007 * 109.47110 * 300.00254 * 1 2 3 26 26 H 1.08998 * 109.46896 * 59.99535 * 1 2 3 27 27 H 1.08994 * 109.47230 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46963 * 240.00459 * 2 1 3 29 29 H 1.09000 * 109.47198 * 119.99753 * 2 1 3 30 30 H 0.96998 * 119.99531 * 179.97438 * 8 7 5 31 31 H 1.08003 * 127.26725 * 0.03661 * 17 16 14 32 32 H 0.96703 * 117.00234 * 179.97438 * 21 19 18 33 33 H 1.08996 * 109.47625 * 269.96024 * 24 23 22 34 34 H 1.09003 * 109.47330 * 29.96340 * 24 23 22 35 35 H 1.08995 * 109.47334 * 149.95895 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8812 -1.3819 10 1 6.5549 -0.3502 -0.7602 11 1 6.3830 0.9223 -2.8173 12 1 6.5570 2.0737 -0.6903 13 8 1.6560 2.0917 1.2407 14 6 0.4676 2.7282 1.2560 15 8 -0.2280 2.7406 0.2594 16 6 0.0132 3.4076 2.4786 17 6 -1.1602 4.0970 2.6436 18 6 -1.1409 4.5582 3.9750 19 6 -2.1918 5.3550 4.6387 20 8 -3.1933 5.6688 4.0271 21 8 -2.0399 5.7342 5.9224 22 7 -0.0089 4.1513 4.5189 23 7 0.6821 3.4792 3.6698 24 6 1.9911 2.8784 3.9374 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0603 -2.9503 31 1 -1.9364 4.2520 1.9089 32 1 -2.7545 6.2551 6.3138 33 1 2.7762 3.5939 3.6932 34 1 2.0591 2.6102 4.9917 35 1 2.1120 1.9838 3.3265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589463598.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = -101.861745 kcal Electronic energy + Delta-G solvation = -22154.844693 eV Core-core repulsion = 18541.094238 eV Total energy + Delta-G solvation = -3613.750455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.80914 -40.02222 -39.54768 -36.24295 -36.05247 -33.91084 -33.37826 -31.63019 -31.09581 -27.96991 -27.48281 -24.61968 -23.80934 -22.91389 -21.08255 -20.56415 -19.78214 -18.29148 -17.85315 -16.83566 -16.66186 -16.32741 -16.15705 -15.62207 -15.12682 -14.95768 -14.53297 -13.94254 -13.55719 -13.27832 -12.93753 -12.90330 -12.62623 -12.21258 -11.73023 -11.67683 -11.54707 -11.34095 -11.20222 -11.08826 -11.01105 -10.77215 -10.40944 -10.09987 -9.87732 -9.56261 -9.45207 -9.32467 -8.98440 -8.58429 -6.30793 -4.39330 1.06862 1.29156 2.14059 2.78109 2.93926 3.16218 3.20876 3.24538 3.28147 3.36010 4.18085 4.21116 4.79952 5.01729 5.07014 5.21469 5.27994 5.40364 5.51357 5.79262 6.10164 6.11881 6.17951 6.23057 6.29963 6.41614 6.69912 6.81311 7.01245 7.04439 7.44825 7.49723 7.58174 7.74292 7.80929 7.99010 8.35015 8.69013 9.26459 10.75833 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029880 B = 0.004116 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.844446 B = 6801.674623 C = 7329.156600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.069 0.931 7 C 0.065 3.935 8 N -0.885 5.885 9 Si 0.912 3.088 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.353 6.353 14 C 0.527 3.473 15 O -0.488 6.488 16 C -0.010 4.010 17 C -0.097 4.097 18 C -0.028 4.028 19 C 0.581 3.419 20 O -0.506 6.506 21 O -0.501 6.501 22 N -0.208 5.208 23 N -0.241 5.241 24 C 0.076 3.924 25 H 0.030 0.970 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.111 0.889 29 H 0.043 0.957 30 H 0.268 0.732 31 H 0.179 0.821 32 H 0.414 0.586 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 5.067 12.764 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.563 4.563 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.270 6.270 14 C 0.369 3.631 15 O -0.375 6.375 16 C -0.133 4.133 17 C -0.125 4.125 18 C -0.181 4.181 19 C 0.422 3.578 20 O -0.392 6.392 21 O -0.312 6.312 22 N -0.051 5.051 23 N -0.035 5.035 24 C -0.063 4.063 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.129 0.871 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.196 0.804 32 H 0.273 0.727 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.384 4.766 12.851 14.390 hybrid contribution 0.042 0.208 -0.690 0.722 sum -4.342 4.973 12.161 13.838 Atomic orbital electron populations 1.21885 0.98268 0.99323 1.00798 1.22052 0.92704 0.99100 1.03590 1.20831 0.95234 0.88788 0.78041 0.93116 1.20975 0.89257 1.39566 1.06539 0.91249 1.24877 0.99316 0.94613 0.94977 1.69877 1.35523 1.37377 1.09417 0.86270 0.83666 0.78677 0.77515 1.20305 1.20910 1.19621 1.86528 1.33021 1.62525 1.44883 1.19419 0.81606 0.76924 0.85195 1.90876 1.55449 1.57885 1.33284 1.20813 0.95790 1.08475 0.88263 1.21787 0.97273 0.97823 0.95568 1.20389 0.95082 1.08747 0.93889 1.19104 0.83477 0.75833 0.79377 1.90931 1.29138 1.53493 1.65634 1.84637 1.51445 1.68108 1.27013 1.73656 1.04195 1.07809 1.19404 1.46149 1.16300 1.34509 1.06557 1.22673 0.77715 1.00958 1.04974 0.95065 0.92617 0.94566 0.87084 0.93858 0.92198 0.80378 0.72711 0.88555 0.88265 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.57 37.16 0.32 -2.68 16 2 C -0.14 -3.13 5.49 -26.73 -0.15 -3.28 16 3 C 0.22 5.41 2.25 -27.88 -0.06 5.35 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 5 C -0.53 -13.45 8.90 -34.44 -0.31 -13.75 16 6 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.07 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.88 -23.62 11.29 55.43 0.63 -23.00 16 9 Si 0.91 19.79 29.54 -169.99 -5.02 14.77 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 O -0.35 -7.35 7.22 -40.81 -0.29 -7.65 16 14 C 0.53 10.40 6.38 34.31 0.22 10.62 16 15 O -0.49 -10.74 14.09 -19.30 -0.27 -11.01 16 16 C -0.01 -0.17 6.90 -82.49 -0.57 -0.74 16 17 C -0.10 -1.51 10.55 -38.98 -0.41 -1.92 16 18 C -0.03 -0.41 7.13 -82.94 -0.59 -1.00 16 19 C 0.58 7.56 8.34 34.57 0.29 7.85 16 20 O -0.51 -7.54 17.70 -19.25 -0.34 -7.88 16 21 O -0.50 -4.88 13.44 -40.53 -0.54 -5.42 16 22 N -0.21 -3.03 11.97 33.32 0.40 -2.63 16 23 N -0.24 -3.51 3.75 -64.22 -0.24 -3.75 16 24 C 0.08 0.86 10.79 59.84 0.65 1.51 16 25 H 0.03 0.62 6.06 -51.93 -0.31 0.30 16 26 H 0.05 1.21 7.79 -51.93 -0.40 0.81 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.11 2.80 5.95 -51.93 -0.31 2.49 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 31 H 0.18 2.59 8.06 -52.48 -0.42 2.17 16 32 H 0.41 1.76 9.11 45.56 0.42 2.18 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.12 1.57 6.11 -51.93 -0.32 1.25 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -30.64 309.83 -4.69 -35.33 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -2.96 Total: 3.04 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.71 Total: 3.53 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.78 Total: -29.38 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.45 Total: -31.97 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.64 -4.69 -35.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463598.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.529 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds