Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 H 1.08997 * 109.47039 * 55.00172 * 3 2 1 5 5 C 1.50701 * 109.47075 * 175.00039 * 3 2 1 6 6 H 1.07995 * 119.99984 * 120.00318 * 5 3 2 7 7 C 1.37881 * 119.99878 * 299.99635 * 5 3 2 8 8 N 1.31512 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00047 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47179 * 60.00053 * 9 7 5 11 11 H 1.48494 * 109.47243 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47065 * 300.00678 * 9 7 5 13 13 O 1.45194 * 109.47165 * 295.00040 * 3 2 1 14 14 C 1.34806 * 117.00239 * 90.00242 * 13 3 2 15 15 O 1.21547 * 120.00042 * 359.97438 * 14 13 3 16 16 C 1.47063 * 120.00112 * 179.97438 * 14 13 3 17 17 C 1.37090 * 126.64864 * 180.29250 * 16 14 13 18 18 C 1.40927 * 105.46172 * 180.12971 * 17 16 14 19 19 C 1.47633 * 126.26604 * 179.88169 * 18 17 16 20 20 O 1.21485 * 120.00160 * 359.71270 * 19 18 17 21 21 O 1.34720 * 119.99806 * 179.71254 * 19 18 17 22 22 N 1.32005 * 107.45865 * 359.62015 * 18 17 16 23 23 N 1.28456 * 110.51106 * 0.24060 * 22 18 17 24 24 C 1.46495 * 125.06840 * 180.02562 * 23 22 18 25 25 H 1.09000 * 109.46821 * 59.99856 * 1 2 3 26 26 H 1.08998 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46732 * 300.00179 * 1 2 3 28 28 H 1.08998 * 109.46732 * 239.99821 * 2 1 3 29 29 H 1.09000 * 109.46821 * 120.00144 * 2 1 3 30 30 H 0.97001 * 120.00254 * 179.97438 * 8 7 5 31 31 H 1.08001 * 127.26489 * 359.97438 * 17 16 14 32 32 H 0.96700 * 117.00126 * 180.02562 * 21 19 18 33 33 H 1.09003 * 109.46887 * 89.97471 * 24 23 22 34 34 H 1.09002 * 109.47159 * 209.97834 * 24 23 22 35 35 H 1.08996 * 109.46878 * 329.97550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3366 2.1729 9 14 6.0050 0.8811 1.3819 10 1 6.4996 2.2813 1.3822 11 1 6.3979 0.2166 2.6504 12 1 6.5976 0.1471 0.2349 13 8 1.6560 2.0916 -1.2406 14 6 0.4678 2.7282 -1.2560 15 8 -0.2283 2.7399 -0.2597 16 6 0.0138 3.4085 -2.4782 17 6 -1.1597 4.0978 -2.6433 18 6 -1.1403 4.5592 -3.9747 19 6 -2.1911 5.3562 -4.6381 20 8 -3.1932 5.6692 -4.0268 21 8 -2.0387 5.7365 -5.9215 22 7 -0.0079 4.1531 -4.5181 23 7 0.6832 3.4810 -3.6692 24 6 1.9931 2.8819 -3.9362 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0619 2.9496 31 1 -1.9363 4.2521 -1.9088 32 1 -2.7532 6.2574 -6.3129 33 1 2.7771 3.5986 -3.6916 34 1 2.1149 1.9875 -3.3252 35 1 2.0618 2.6138 -4.9904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589463599.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -101.806608 kcal Electronic energy + Delta-G solvation = -22154.640165 eV Core-core repulsion = 18540.892100 eV Total energy + Delta-G solvation = -3613.748065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.80930 -40.02067 -39.54777 -36.24198 -36.05191 -33.91053 -33.37795 -31.62965 -31.09505 -27.97019 -27.48194 -24.61920 -23.80893 -22.91289 -21.08265 -20.56366 -19.78129 -18.29121 -17.85289 -16.83434 -16.66172 -16.32728 -16.15588 -15.62137 -15.12650 -14.95576 -14.53666 -13.94228 -13.55757 -13.27867 -12.93305 -12.90354 -12.62575 -12.21148 -11.72988 -11.67569 -11.54280 -11.34797 -11.20323 -11.06278 -11.01097 -10.78864 -10.41694 -10.09810 -9.87522 -9.56476 -9.45200 -9.32457 -8.98730 -8.58130 -6.30488 -4.39202 1.06865 1.29129 2.14050 2.78118 2.93925 3.17749 3.20601 3.23512 3.28166 3.35704 4.18064 4.21200 4.79971 5.01866 5.07047 5.21401 5.27980 5.40366 5.51340 5.79315 6.10174 6.11976 6.18076 6.23051 6.30031 6.41637 6.69990 6.81418 7.01363 7.04520 7.44776 7.49711 7.58332 7.74303 7.80937 7.99137 8.35100 8.68847 9.26516 10.76053 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.004116 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.961724 B = 6801.242316 C = 7329.439006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.069 0.931 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 O -0.353 6.353 14 C 0.527 3.473 15 O -0.488 6.488 16 C -0.010 4.010 17 C -0.097 4.097 18 C -0.028 4.028 19 C 0.581 3.419 20 O -0.506 6.506 21 O -0.501 6.501 22 N -0.208 5.208 23 N -0.241 5.241 24 C 0.076 3.924 25 H 0.030 0.970 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.111 0.889 30 H 0.269 0.731 31 H 0.179 0.821 32 H 0.414 0.586 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.967 5.069 -12.747 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.564 4.564 6 H 0.087 0.913 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.270 6.270 14 C 0.369 3.631 15 O -0.375 6.375 16 C -0.133 4.133 17 C -0.124 4.124 18 C -0.181 4.181 19 C 0.422 3.578 20 O -0.392 6.392 21 O -0.312 6.312 22 N -0.051 5.051 23 N -0.035 5.035 24 C -0.063 4.063 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.196 0.804 32 H 0.273 0.727 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.375 4.760 -12.832 14.368 hybrid contribution 0.045 0.222 0.684 0.721 sum -4.330 4.982 -12.148 13.825 Atomic orbital electron populations 1.21885 0.98269 0.99321 1.00798 1.22050 0.92700 0.99102 1.03592 1.20822 0.95212 0.88788 0.78032 0.93128 1.20936 0.89259 1.39675 1.06551 0.91297 1.24875 0.99307 0.94588 0.94977 1.69865 1.35629 1.37271 1.09437 0.86328 0.83653 0.78534 0.77606 1.19958 1.20969 1.19898 1.86524 1.33026 1.62519 1.44886 1.19418 0.81609 0.76929 0.85190 1.90877 1.55424 1.57905 1.33294 1.20816 0.95791 1.08464 0.88274 1.21790 0.97274 0.97820 0.95565 1.20387 0.95076 1.08751 0.93893 1.19106 0.83482 0.75831 0.79372 1.90933 1.29105 1.53529 1.65629 1.84639 1.51433 1.68087 1.27044 1.73650 1.04193 1.07814 1.19408 1.46151 1.16269 1.34524 1.06573 1.22676 0.77669 1.00993 1.04983 0.95065 0.94567 0.92618 0.93858 0.87082 0.92135 0.80379 0.72713 0.88556 0.85855 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.56 37.16 0.32 -2.68 16 2 C -0.14 -3.13 5.49 -26.73 -0.15 -3.28 16 3 C 0.22 5.42 2.25 -27.88 -0.06 5.36 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.53 -13.47 8.90 -34.44 -0.31 -13.78 16 6 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.07 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.88 -23.63 11.29 55.43 0.63 -23.00 16 9 Si 0.91 19.78 29.54 -169.99 -5.02 14.76 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 O -0.35 -7.35 7.22 -40.78 -0.29 -7.65 16 14 C 0.53 10.40 6.38 34.31 0.22 10.62 16 15 O -0.49 -10.74 14.09 -19.30 -0.27 -11.01 16 16 C -0.01 -0.17 6.90 -82.48 -0.57 -0.74 16 17 C -0.10 -1.51 10.55 -38.98 -0.41 -1.92 16 18 C -0.03 -0.41 7.13 -82.94 -0.59 -1.00 16 19 C 0.58 7.56 8.34 34.57 0.29 7.85 16 20 O -0.51 -7.55 17.70 -19.25 -0.34 -7.89 16 21 O -0.50 -4.88 13.44 -40.55 -0.54 -5.43 16 22 N -0.21 -3.03 11.97 33.32 0.40 -2.63 16 23 N -0.24 -3.51 3.75 -64.21 -0.24 -3.75 16 24 C 0.08 0.86 10.79 59.84 0.65 1.51 16 25 H 0.03 0.62 6.06 -51.93 -0.31 0.30 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 1.21 7.79 -51.93 -0.40 0.81 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.11 2.80 5.95 -51.93 -0.31 2.49 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 32 H 0.41 1.76 9.11 45.56 0.42 2.18 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.12 1.57 6.11 -51.93 -0.32 1.25 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 309.82 15.07 4.67 4.67 Total: -1.00 -30.62 309.82 -4.69 -35.31 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -2.96 Total: 3.08 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.71 Total: 3.53 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 0.78 Total: -29.38 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.45 Total: -31.97 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.62 -4.69 -35.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463599.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.498 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds