Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 H 1.08997 * 109.47039 * 55.00172 * 3 2 1 5 5 C 1.50701 * 109.47075 * 175.00039 * 3 2 1 6 6 H 1.07995 * 119.99984 * 120.00318 * 5 3 2 7 7 C 1.37881 * 119.99878 * 299.99635 * 5 3 2 8 8 N 1.31512 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00047 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47179 * 60.00053 * 9 7 5 11 11 H 1.48494 * 109.47243 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47065 * 300.00678 * 9 7 5 13 13 O 1.45194 * 109.47165 * 295.00040 * 3 2 1 14 14 C 1.34806 * 117.00239 * 90.00242 * 13 3 2 15 15 O 1.21547 * 120.00042 * 359.97438 * 14 13 3 16 16 C 1.47063 * 120.00112 * 179.97438 * 14 13 3 17 17 C 1.37090 * 126.64864 * 180.29250 * 16 14 13 18 18 C 1.40927 * 105.46172 * 180.12971 * 17 16 14 19 19 C 1.47633 * 126.26604 * 179.88169 * 18 17 16 20 20 O 1.21485 * 120.00160 * 359.71270 * 19 18 17 21 21 O 1.34720 * 119.99806 * 179.71254 * 19 18 17 22 22 N 1.32005 * 107.45865 * 359.62015 * 18 17 16 23 23 N 1.28456 * 110.51106 * 0.24060 * 22 18 17 24 24 C 1.46495 * 125.06840 * 180.02562 * 23 22 18 25 25 H 1.09000 * 109.46821 * 59.99856 * 1 2 3 26 26 H 1.08998 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46732 * 300.00179 * 1 2 3 28 28 H 1.08998 * 109.46732 * 239.99821 * 2 1 3 29 29 H 1.09000 * 109.46821 * 120.00144 * 2 1 3 30 30 H 0.97001 * 120.00254 * 179.97438 * 8 7 5 31 31 H 1.08001 * 127.26489 * 359.97438 * 17 16 14 32 32 H 0.96700 * 117.00126 * 180.02562 * 21 19 18 33 33 H 1.09003 * 109.46887 * 89.97471 * 24 23 22 34 34 H 1.09002 * 109.47159 * 209.97834 * 24 23 22 35 35 H 1.08996 * 109.46878 * 329.97550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3366 2.1729 9 14 6.0050 0.8811 1.3819 10 1 6.4996 2.2813 1.3822 11 1 6.3979 0.2166 2.6504 12 1 6.5976 0.1471 0.2349 13 8 1.6560 2.0916 -1.2406 14 6 0.4678 2.7282 -1.2560 15 8 -0.2283 2.7399 -0.2597 16 6 0.0138 3.4085 -2.4782 17 6 -1.1597 4.0978 -2.6433 18 6 -1.1403 4.5592 -3.9747 19 6 -2.1911 5.3562 -4.6381 20 8 -3.1932 5.6692 -4.0268 21 8 -2.0387 5.7365 -5.9215 22 7 -0.0079 4.1531 -4.5181 23 7 0.6832 3.4810 -3.6692 24 6 1.9931 2.8819 -3.9362 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0619 2.9496 31 1 -1.9363 4.2521 -1.9088 32 1 -2.7532 6.2574 -6.3129 33 1 2.7771 3.5986 -3.6916 34 1 2.1149 1.9875 -3.3252 35 1 2.0618 2.6138 -4.9904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589463599.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -121.749887 kcal Electronic energy + Delta-G solvation = -22155.504970 eV Core-core repulsion = 18540.892100 eV Total energy + Delta-G solvation = -3614.612870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.00230 -41.29885 -40.91380 -37.78656 -37.15044 -35.61444 -34.64533 -33.40848 -32.46161 -29.36216 -28.98701 -26.09673 -25.10366 -24.52910 -22.28607 -22.10574 -21.28172 -19.67926 -18.84875 -18.64901 -17.93196 -17.87592 -17.35121 -16.95677 -16.63439 -16.36651 -16.06933 -15.12611 -15.00705 -14.71074 -14.47410 -14.17947 -13.74482 -13.64091 -13.34721 -13.27979 -13.12498 -12.79991 -12.63917 -12.58914 -12.45289 -12.14739 -12.05826 -11.79864 -11.67390 -11.40926 -10.85895 -10.69228 -10.52365 -10.47898 -8.25518 -6.42192 -0.19959 0.12086 1.05157 1.43377 1.47883 1.52893 1.59937 1.68997 1.93604 2.05386 2.41333 3.05295 3.05867 3.45449 4.03777 4.10387 4.24437 4.33769 4.38433 4.39602 4.47040 4.54835 4.76618 4.81564 4.92818 5.07024 5.19558 5.20903 5.32179 5.45629 5.51824 5.66520 5.88964 6.06661 6.36656 6.58620 6.80472 6.94410 7.28263 8.80872 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.004116 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.961724 B = 6801.242316 C = 7329.439006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.130 4.130 3 C 0.227 3.773 4 H 0.011 0.989 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.978 3.022 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.262 1.262 13 O -0.346 6.346 14 C 0.530 3.470 15 O -0.517 6.517 16 C -0.030 4.030 17 C -0.094 4.094 18 C -0.035 4.035 19 C 0.591 3.409 20 O -0.529 6.529 21 O -0.492 6.492 22 N -0.196 5.196 23 N -0.234 5.234 24 C 0.068 3.932 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.270 0.730 31 H 0.182 0.818 32 H 0.439 0.561 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 5.405 -14.842 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.168 4.168 3 C 0.175 3.825 4 H 0.029 0.971 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.801 3.199 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.186 1.186 13 O -0.262 6.262 14 C 0.373 3.627 15 O -0.406 6.406 16 C -0.153 4.153 17 C -0.121 4.121 18 C -0.187 4.187 19 C 0.433 3.567 20 O -0.417 6.417 21 O -0.305 6.305 22 N -0.040 5.040 23 N -0.029 5.029 24 C -0.069 4.069 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.200 0.800 32 H 0.303 0.697 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.726 5.114 -14.977 16.258 hybrid contribution -0.208 0.183 1.234 1.265 sum -3.934 5.297 -13.743 15.245 Atomic orbital electron populations 1.21751 0.96598 1.00698 1.00062 1.21899 0.94138 0.98015 1.02781 1.20516 0.94789 0.89201 0.78036 0.97146 1.21268 0.90024 1.39985 1.07055 0.90732 1.25743 1.03843 0.93983 0.94478 1.70000 1.37467 1.37820 1.09888 0.85303 0.78080 0.78663 0.77806 1.19533 1.20875 1.18628 1.86524 1.33876 1.62728 1.43041 1.19799 0.80733 0.76272 0.85932 1.90863 1.55987 1.58993 1.34712 1.20408 0.96891 1.09880 0.88099 1.21935 0.96863 0.97040 0.96280 1.20615 0.95537 1.08968 0.93620 1.18801 0.82522 0.75316 0.80102 1.90935 1.29826 1.54456 1.66448 1.84578 1.52685 1.68073 1.25172 1.73661 1.04049 1.07333 1.18944 1.46429 1.16803 1.33996 1.05639 1.22942 0.76568 1.00588 1.06848 0.94654 0.92040 0.94442 0.92945 0.89407 0.92099 0.80024 0.69749 0.87304 0.87279 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.56 71.98 0.62 -4.93 16 2 C -0.13 -6.07 5.49 30.59 0.17 -5.90 16 3 C 0.23 11.32 2.25 29.85 0.07 11.38 16 4 H 0.01 0.61 7.16 -2.39 -0.02 0.60 16 5 C -0.55 -28.18 8.90 25.60 0.23 -27.95 16 6 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 7 C 0.02 1.01 5.29 84.66 0.45 1.46 16 8 N -0.91 -49.73 11.29 21.45 0.24 -49.48 16 9 Si 0.98 40.19 29.54 68.60 2.03 42.22 16 10 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 13 O -0.35 -14.56 7.22 -57.18 -0.41 -14.97 16 14 C 0.53 21.19 6.38 70.14 0.45 21.64 16 15 O -0.52 -23.48 14.09 19.68 0.28 -23.20 16 16 C -0.03 -0.98 6.90 40.41 0.28 -0.70 16 17 C -0.09 -2.84 10.55 22.66 0.24 -2.60 16 18 C -0.04 -0.97 7.13 42.26 0.30 -0.67 16 19 C 0.59 14.18 8.34 70.30 0.59 14.77 16 20 O -0.53 -14.97 17.70 19.88 0.35 -14.62 16 21 O -0.49 -8.11 13.44 -56.30 -0.76 -8.87 16 22 N -0.20 -5.28 11.97 -48.50 -0.58 -5.86 16 23 N -0.23 -6.42 3.75 -357.07 -1.34 -7.76 16 24 C 0.07 1.42 10.79 127.77 1.38 2.80 16 25 H 0.03 1.40 6.06 -2.39 -0.01 1.39 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.04 1.66 7.79 -2.39 -0.02 1.64 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.09 4.54 5.95 -2.39 -0.01 4.53 16 30 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.18 5.27 8.06 -2.91 -0.02 5.25 16 32 H 0.44 2.31 9.11 -74.06 -0.67 1.64 16 33 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.11 2.65 6.11 -2.39 -0.01 2.64 16 35 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -66.03 309.82 5.04 -60.99 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.47 Total: 12.26 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.76 Total: 9.29 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -1.68 Total: -63.11 kcal Atomic # 8 Polarization: -61.12 SS G_CDS: -0.54 Total: -61.66 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -66.03 5.04 -60.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463599.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.756 kcal (2) G-P(sol) polarization free energy of solvation -66.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds