Wall clock time and date at job start Tue Mar 31 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 O 1.45208 * 109.46705 * 65.00425 * 3 2 1 14 14 C 1.34234 * 116.99771 * 269.99740 * 13 3 2 15 15 O 1.20824 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99896 * 180.02562 * 14 13 3 17 17 N 1.46502 * 109.46832 * 180.02562 * 16 14 13 18 18 C 1.34220 * 125.74094 * 125.00308 * 17 16 14 19 19 C 1.38121 * 107.40842 * 179.97438 * 18 17 16 20 20 C 1.47287 * 126.42742 * 179.97438 * 19 18 17 21 21 O 1.21524 * 120.00253 * 0.02562 * 20 19 18 22 22 O 1.34759 * 119.99775 * 179.97438 * 20 19 18 23 23 C 1.41342 * 107.14370 * 359.97438 * 19 18 17 24 24 N 1.30421 * 108.01477 * 359.75954 * 23 19 18 25 25 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 27 27 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 28 28 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 29 29 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 30 30 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46766 * 300.00081 * 16 14 13 32 32 H 1.09000 * 109.46689 * 60.00007 * 16 14 13 33 33 H 1.08004 * 126.30041 * 359.95670 * 18 17 16 34 34 H 0.96701 * 116.99790 * 179.97438 * 22 20 19 35 35 H 1.08005 * 125.98754 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 8 1.6559 2.0916 1.2408 14 6 0.4727 2.7254 1.2561 15 8 -0.2192 2.7369 0.2657 16 6 0.0075 3.4224 2.5086 17 7 -1.3032 4.0319 2.2701 18 6 -2.4101 3.8214 2.9993 19 6 -3.4212 4.5814 2.4444 20 6 -4.8139 4.6629 2.9168 21 8 -5.1653 4.0203 3.8866 22 8 -5.6983 5.4510 2.2743 23 6 -2.8687 5.2660 1.3382 24 7 -1.6100 4.9366 1.2476 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8770 0.4827 -2.1133 31 1 -0.0711 2.6983 3.3195 32 1 0.7246 4.1967 2.7811 33 1 -2.4949 3.1762 3.8613 34 1 -6.6007 5.4717 2.6210 35 1 -3.3956 5.9458 0.6849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595029414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:39 Heat of formation + Delta-G solvation = -90.678295 kcal Electronic energy + Delta-G solvation = -21832.252085 eV Core-core repulsion = 18218.986580 eV Total energy + Delta-G solvation = -3613.265505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69950 -40.06166 -39.66564 -36.30881 -36.15487 -33.91019 -33.54235 -32.01452 -30.69594 -28.74983 -27.67360 -24.16077 -23.07355 -22.29801 -21.03337 -20.64355 -19.90118 -18.30070 -17.70580 -17.61117 -16.72387 -16.37076 -16.10522 -15.70105 -15.50647 -14.84195 -14.67603 -14.12856 -13.70644 -13.59991 -13.10980 -13.02538 -12.88386 -12.32554 -12.04747 -11.85508 -11.71748 -11.59862 -11.37670 -11.31792 -10.85037 -10.52770 -10.33030 -10.11490 -9.84208 -9.73074 -9.56753 -9.19420 -9.03766 -8.74250 -6.31054 -4.34369 1.08731 1.82509 1.99917 2.53234 3.00562 3.04907 3.12131 3.17359 3.25669 3.27756 4.18897 4.34412 4.40733 4.73272 4.89687 4.97418 4.98092 5.06811 5.24365 5.60516 5.68576 5.79093 5.85970 6.20482 6.30282 6.31479 6.41183 6.45698 6.54065 6.61198 6.91757 7.22669 7.33905 7.39281 7.79954 8.06455 8.40852 8.74757 9.25190 10.80760 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035845 B = 0.003655 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.964195 B = 7658.982383 C = 7792.156717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.201 3.799 4 H 0.048 0.952 5 C -0.528 4.528 6 H 0.088 0.912 7 C 0.082 3.918 8 N -0.886 5.886 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.261 1.261 12 H -0.288 1.288 13 O -0.338 6.338 14 C 0.438 3.562 15 O -0.487 6.487 16 C 0.134 3.866 17 N -0.345 5.345 18 C 0.144 3.856 19 C -0.288 4.288 20 C 0.566 3.434 21 O -0.533 6.533 22 O -0.513 6.513 23 C 0.097 3.903 24 N -0.263 5.263 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.270 0.730 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.194 0.806 34 H 0.412 0.588 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.086 6.140 8.965 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.147 3.853 4 H 0.066 0.934 5 C -0.566 4.566 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.522 5.522 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.185 1.185 12 H -0.215 1.215 13 O -0.253 6.253 14 C 0.277 3.723 15 O -0.374 6.374 16 C 0.012 3.988 17 N -0.123 5.123 18 C -0.008 4.008 19 C -0.302 4.302 20 C 0.412 3.588 21 O -0.424 6.424 22 O -0.324 6.324 23 C -0.092 4.092 24 N -0.080 5.080 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.211 0.789 34 H 0.270 0.730 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -15.497 5.974 7.973 18.424 hybrid contribution -1.777 -0.720 -0.200 1.928 sum -17.274 5.254 7.774 19.658 Atomic orbital electron populations 1.21884 0.96991 1.00098 1.01577 1.22384 0.94271 0.99544 1.02423 1.21035 0.96438 0.87988 0.79827 0.93405 1.20761 0.87523 1.40260 1.08037 0.89393 1.24724 0.94957 0.95206 0.97330 1.69827 1.08490 1.44057 1.29822 0.87006 0.81004 0.80104 0.81381 1.19874 1.18543 1.21537 1.86479 1.33455 1.62308 1.43059 1.22985 0.81775 0.78060 0.89435 1.90712 1.55180 1.56757 1.34717 1.21249 0.81823 0.99418 0.96339 1.48086 1.08568 1.33421 1.22190 1.22953 0.84976 0.96607 0.96230 1.19152 0.92429 1.13167 1.05405 1.19633 0.84847 0.75043 0.79300 1.90887 1.79838 1.44241 1.27402 1.84555 1.25035 1.63859 1.58978 1.24245 0.91243 0.97947 0.95809 1.77492 1.16300 1.07253 1.06994 0.93808 0.93927 0.92555 0.91618 0.91093 0.91935 0.84205 0.84812 0.78950 0.72952 0.78608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.57 37.16 0.32 -2.48 16 2 C -0.15 -3.21 5.15 -26.73 -0.14 -3.35 16 3 C 0.20 4.79 1.84 -27.88 -0.05 4.74 16 4 H 0.05 1.23 6.21 -51.93 -0.32 0.91 16 5 C -0.53 -14.58 9.48 -34.44 -0.33 -14.91 16 6 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 7 C 0.08 2.28 5.45 -17.82 -0.10 2.19 16 8 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 9 Si 0.88 21.17 24.41 -169.99 -4.15 17.02 16 10 H -0.27 -6.29 6.83 56.52 0.39 -5.91 16 11 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 O -0.34 -6.94 9.81 -39.27 -0.39 -7.33 16 14 C 0.44 7.68 6.44 36.01 0.23 7.91 16 15 O -0.49 -10.05 12.85 -18.75 -0.24 -10.29 16 16 C 0.13 1.52 7.08 -5.19 -0.04 1.48 16 17 N -0.34 -4.33 3.37 -61.97 -0.21 -4.54 16 18 C 0.14 1.53 11.25 -16.55 -0.19 1.34 16 19 C -0.29 -3.31 6.13 -105.08 -0.64 -3.96 16 20 C 0.57 6.22 8.33 34.41 0.29 6.51 16 21 O -0.53 -7.10 17.69 -19.28 -0.34 -7.44 16 22 O -0.51 -4.09 13.28 -40.65 -0.54 -4.63 16 23 C 0.10 1.16 11.87 -16.97 -0.20 0.96 16 24 N -0.26 -3.88 11.56 30.87 0.36 -3.52 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.76 6.06 -51.93 -0.31 0.44 16 27 H 0.06 1.13 7.80 -51.93 -0.40 0.73 16 28 H 0.07 1.49 3.22 -51.93 -0.17 1.32 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.14 0.98 8.06 -51.93 -0.42 0.57 16 32 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.19 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.41 1.38 9.11 45.56 0.42 1.79 16 35 H 0.20 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 306.32 15.07 4.62 4.62 Total: -1.00 -35.86 306.32 -3.89 -39.75 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -2.93 Total: 1.21 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.84 Total: 0.43 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.92 Total: -33.35 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.51 Total: -29.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.15 Total: 17.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.86 -3.89 -39.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.928 kcal (2) G-P(sol) polarization free energy of solvation -35.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds