Wall clock time and date at job start Tue Mar 31 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47017 * 2 1 4 4 C 1.50702 * 109.46820 * 180.02562 * 3 2 1 5 5 C 1.35284 * 126.65636 * 90.33109 * 4 3 2 6 6 C 1.42336 * 103.92347 * 180.10457 * 5 4 3 7 7 C 1.48167 * 126.94710 * 179.85194 * 6 5 4 8 8 O 1.21547 * 120.00019 * 354.42226 * 7 6 5 9 9 N 1.34770 * 119.99786 * 174.41743 * 7 6 5 10 10 C 1.36780 * 120.00071 * 5.20776 * 9 7 6 11 11 H 1.07998 * 120.00343 * 319.48389 * 10 9 7 12 12 C 1.39123 * 119.99721 * 139.48284 * 10 9 7 13 13 N 1.31322 * 119.99851 * 166.24665 * 12 10 9 14 14 Si 1.86798 * 120.00097 * 346.24121 * 12 10 9 15 15 H 1.48499 * 109.46806 * 92.16888 * 14 12 10 16 16 H 1.48497 * 109.47406 * 212.16759 * 14 12 10 17 17 H 1.48495 * 109.47110 * 332.17259 * 14 12 10 18 18 C 1.46505 * 119.99878 * 185.20741 * 9 7 6 19 19 C 1.50697 * 109.46970 * 84.81774 * 18 9 7 20 20 O 1.20830 * 120.00103 * 359.97438 * 19 18 9 21 21 O 1.34229 * 120.00156 * 180.02562 * 19 18 9 22 22 N 1.31074 * 106.10374 * 359.59361 * 6 5 4 23 23 O 1.20911 * 111.41501 * 0.26289 * 22 6 5 24 24 H 1.09007 * 109.47006 * 300.00159 * 1 2 3 25 25 H 1.08996 * 109.47421 * 59.99839 * 1 2 3 26 26 H 1.09003 * 109.47662 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46716 * 240.00228 * 2 1 3 28 28 H 1.08999 * 109.46945 * 119.99958 * 2 1 3 29 29 H 1.08996 * 109.47191 * 60.00519 * 3 2 1 30 30 H 1.08999 * 109.47228 * 299.99784 * 3 2 1 31 31 H 1.07992 * 128.03467 * 359.96269 * 5 4 3 32 32 H 0.96997 * 119.99793 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.47187 * 204.81333 * 18 9 7 34 34 H 1.08997 * 109.46837 * 324.81376 * 18 9 7 35 35 H 0.96699 * 117.00517 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3542 1.4489 -1.0862 6 6 5.6672 1.4430 -0.5368 7 6 6.9459 1.4433 -1.2853 8 8 6.9409 1.3466 -2.4969 9 7 8.1145 1.5509 -0.6227 10 6 8.1276 1.5525 0.7450 11 1 7.3692 2.0931 1.2917 12 6 9.1179 0.8576 1.4319 13 7 9.2997 1.0704 2.7150 14 14 10.1890 -0.3783 0.5293 15 1 11.4165 0.2971 0.0370 16 1 10.5657 -1.4763 1.4553 17 1 9.4363 -0.9379 -0.6220 18 6 9.3709 1.6660 -1.3674 19 6 9.6073 3.1086 -1.7337 20 8 8.8080 3.9537 -1.4067 21 8 10.7051 3.4546 -2.4242 22 7 5.5165 1.4431 0.7653 23 8 4.3475 1.4427 1.0743 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 4.0686 1.4545 -2.1277 32 1 9.9904 0.5862 3.1938 33 1 10.1941 1.3088 -0.7487 34 1 9.3115 1.0656 -2.2752 35 1 10.8132 4.3918 -2.6363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596052929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:54 Heat of formation + Delta-G solvation = -48.675646 kcal Electronic energy + Delta-G solvation = -22369.384917 eV Core-core repulsion = 18757.940784 eV Total energy + Delta-G solvation = -3611.444133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.33106 -39.95007 -38.51233 -35.71127 -35.58755 -35.00449 -33.19071 -32.11505 -31.29113 -28.51897 -26.83127 -25.28705 -23.60379 -22.23732 -21.72033 -21.12030 -19.01416 -17.80257 -17.71767 -17.07708 -16.58542 -16.34846 -15.71498 -15.33677 -15.15902 -15.02344 -14.34408 -13.86951 -13.69553 -13.38147 -13.12903 -12.85175 -12.62379 -12.55086 -12.35446 -11.85758 -11.58505 -11.42053 -11.18415 -11.10142 -10.92330 -10.66987 -10.48528 -10.03260 -9.98713 -9.68285 -9.53780 -9.03382 -8.86518 -8.08357 -6.53888 -4.21011 1.91538 2.24798 2.75364 2.91203 3.12295 3.13754 3.29867 3.53263 3.94755 3.99283 4.14255 4.74693 4.81307 4.92431 4.93917 5.08418 5.27727 5.47026 5.53027 5.59309 5.65355 5.67330 5.73259 5.80661 5.84131 5.92313 6.12459 6.13881 6.18855 6.46732 6.92060 7.03458 7.86125 8.30023 8.40444 8.64425 8.92599 9.13097 9.34621 10.55429 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.005450 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.367578 B = 5136.763040 C = 5896.322415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.033 4.033 4 C -0.061 4.061 5 C -0.186 4.186 6 C -0.004 4.004 7 C 0.563 3.437 8 O -0.581 6.581 9 N -0.430 5.430 10 C -0.338 4.338 11 H 0.131 0.869 12 C 0.067 3.933 13 N -0.848 5.848 14 Si 0.864 3.136 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.256 1.256 18 C 0.104 3.896 19 C 0.467 3.533 20 O -0.498 6.498 21 O -0.524 6.524 22 N -0.282 5.282 23 O 0.108 5.892 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.170 0.830 32 H 0.278 0.722 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -0.910 -5.395 10.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.071 4.071 4 C -0.123 4.123 5 C -0.209 4.209 6 C -0.162 4.162 7 C 0.353 3.647 8 O -0.464 6.464 9 N -0.151 5.151 10 C -0.466 4.466 11 H 0.148 0.852 12 C -0.141 4.141 13 N -0.482 5.482 14 Si 0.691 3.309 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.180 1.180 18 C -0.020 4.020 19 C 0.307 3.693 20 O -0.383 6.383 21 O -0.336 6.336 22 N 0.018 4.982 23 O 0.033 5.967 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.187 0.813 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.341 -1.181 -4.611 9.603 hybrid contribution 0.612 0.099 -1.078 1.244 sum -7.729 -1.082 -5.689 9.658 Atomic orbital electron populations 1.21766 0.95286 1.01868 1.01924 1.21566 0.95848 0.95583 1.03202 1.20104 0.84301 0.98425 1.04284 1.24303 0.95795 1.05715 0.86517 1.22285 0.90349 1.07520 1.00723 1.23135 0.95747 1.07517 0.89834 1.16946 0.82097 0.80024 0.85644 1.90644 1.86943 1.55555 1.13300 1.43218 1.02458 1.62189 1.07201 1.19644 1.17004 1.32398 0.77537 0.85157 1.25427 0.97017 0.96223 0.95448 1.69626 1.31380 1.38867 1.08362 0.87156 0.80732 0.82260 0.80792 1.19395 1.20480 1.18030 1.21420 0.90867 0.89955 0.99802 1.24286 0.77918 0.93304 0.73823 1.90684 1.45320 1.52065 1.50280 1.84555 1.45094 1.34397 1.69513 1.74872 0.94162 1.13657 1.15535 1.84923 1.12112 1.66099 1.33571 0.92497 0.92613 0.92536 0.91378 0.91235 0.89588 0.88997 0.81269 0.91120 0.87092 0.86651 0.74061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 3 C -0.03 -0.34 5.78 -27.88 -0.16 -0.50 16 4 C -0.06 -0.95 6.73 -35.36 -0.24 -1.19 16 5 C -0.19 -3.39 10.93 -39.06 -0.43 -3.82 16 6 C 0.00 -0.08 6.91 -82.54 -0.57 -0.65 16 7 C 0.56 14.27 7.47 -12.19 -0.09 14.17 16 8 O -0.58 -14.93 16.59 5.32 0.09 -14.84 16 9 N -0.43 -11.00 1.71 -117.06 -0.20 -11.20 16 10 C -0.34 -9.28 8.59 -15.02 -0.13 -9.41 16 11 H 0.13 3.89 5.96 -52.49 -0.31 3.58 16 12 C 0.07 1.81 5.40 -17.44 -0.09 1.71 16 13 N -0.85 -23.66 13.95 55.50 0.77 -22.89 16 14 Si 0.86 19.65 24.73 -169.99 -4.20 15.45 16 15 H -0.27 -5.64 6.66 56.52 0.38 -5.26 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.26 -5.81 7.06 56.52 0.40 -5.41 16 18 C 0.10 2.34 4.48 -5.19 -0.02 2.32 16 19 C 0.47 10.00 8.36 36.00 0.30 10.30 16 20 O -0.50 -12.26 17.07 -18.75 -0.32 -12.58 16 21 O -0.52 -8.61 13.42 -39.26 -0.53 -9.14 16 22 N -0.28 -6.55 8.92 33.30 0.30 -6.25 16 23 O 0.11 2.08 11.18 17.20 0.19 2.27 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.17 2.69 8.06 -52.49 -0.42 2.26 16 32 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.11 2.45 3.21 -51.93 -0.17 2.28 16 34 H 0.12 2.38 7.51 -51.93 -0.39 1.99 16 35 H 0.40 4.56 9.10 45.56 0.41 4.98 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -33.69 308.02 -3.48 -37.17 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.00 Total: 6.53 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -1.22 Total: 10.84 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.87 Total: -40.34 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.57 Total: -34.28 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.20 Total: 15.45 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.69 -3.48 -37.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596052929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.506 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds