Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47219 * 2 1 4 4 C 1.37093 * 120.00532 * 264.75312 * 3 2 1 5 5 H 1.07995 * 120.00555 * 146.16616 * 4 3 2 6 6 C 1.38960 * 119.99468 * 326.16185 * 4 3 2 7 7 N 1.31401 * 120.00201 * 337.68818 * 6 4 3 8 8 Si 1.86806 * 119.99502 * 157.68697 * 6 4 3 9 9 H 1.48499 * 109.47199 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47088 * 120.00253 * 8 6 4 11 11 H 1.48501 * 109.46821 * 240.00253 * 8 6 4 12 12 C 1.34784 * 119.99566 * 84.75131 * 3 2 1 13 13 O 1.21289 * 119.99672 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99843 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.46845 * 179.97438 * 14 12 3 16 16 C 1.50703 * 109.47323 * 179.97438 * 15 14 12 17 17 O 1.34221 * 126.53404 * 270.16675 * 16 15 14 18 18 C 1.34064 * 108.24443 * 180.22514 * 17 16 15 19 19 N 1.29916 * 109.25792 * 359.77337 * 18 17 16 20 20 C 1.36108 * 108.47634 * 359.97438 * 19 18 17 21 21 C 1.47270 * 126.45863 * 179.97438 * 20 19 18 22 22 O 1.21538 * 119.99811 * 179.75484 * 21 20 19 23 23 O 1.34773 * 120.00075 * 0.02562 * 21 20 19 24 24 H 1.08997 * 109.46934 * 59.99530 * 1 2 3 25 25 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.46857 * 299.99664 * 1 2 3 27 27 H 1.09004 * 109.46695 * 240.00180 * 2 1 3 28 28 H 1.08992 * 109.47326 * 120.00719 * 2 1 3 29 29 H 0.97002 * 120.00280 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46889 * 60.00440 * 14 12 3 31 31 H 1.08997 * 109.47396 * 300.00222 * 14 12 3 32 32 H 1.09006 * 109.47283 * 60.00255 * 15 14 12 33 33 H 1.08997 * 109.47388 * 300.00329 * 15 14 12 34 34 H 1.07997 * 125.36896 * 179.73118 * 18 17 16 35 35 H 0.96707 * 116.99969 * 179.72106 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3493 1.9914 -1.1822 5 1 2.1815 3.0507 -1.3087 6 6 2.9007 1.2467 -2.2178 7 7 3.5051 0.1089 -1.9595 8 14 2.7826 1.8633 -3.9772 9 1 2.0582 3.1594 -3.9999 10 1 4.1484 2.0493 -4.5293 11 1 2.0465 0.8709 -4.8011 12 6 2.1423 2.0521 1.1624 13 8 2.5471 3.1954 1.1625 14 6 1.7780 1.3815 2.4619 15 6 2.0098 2.3540 3.6200 16 6 1.6450 1.6838 4.9196 17 8 0.4386 1.6850 5.5080 18 6 0.5268 0.9839 6.6474 19 7 1.7410 0.5433 6.7865 20 6 2.4756 0.9586 5.7187 21 6 3.9016 0.6818 5.4766 22 8 4.4422 1.1093 4.4755 23 8 4.6058 -0.0503 6.3624 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 3.8897 -0.4111 -2.6824 30 1 2.3994 0.4969 2.6009 31 1 0.7285 1.0883 2.4377 32 1 1.3888 3.2391 3.4813 33 1 3.0595 2.6469 3.6440 34 1 -0.2836 0.8131 7.3405 35 1 5.5377 -0.2090 6.1584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = -99.255343 kcal Electronic energy + Delta-G solvation = -22244.384527 eV Core-core repulsion = 18630.747094 eV Total energy + Delta-G solvation = -3613.637433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.62948 -39.92822 -38.65099 -36.16400 -35.14219 -34.99993 -33.65872 -31.99213 -29.63428 -29.41971 -26.15988 -24.83491 -23.70881 -22.40027 -22.06928 -20.74022 -18.78904 -18.44763 -17.59735 -16.99358 -16.79139 -16.23401 -15.71209 -15.42802 -15.30572 -14.72300 -14.44821 -14.17059 -13.41622 -13.23373 -13.04850 -12.83561 -12.46358 -11.99519 -11.78557 -11.66726 -11.59689 -11.40605 -11.08353 -11.04662 -10.96330 -10.88764 -10.54148 -10.30809 -10.26830 -10.05839 -9.16609 -8.94456 -8.40350 -7.49094 -6.32187 -3.93132 0.85909 1.77773 2.34465 2.90623 2.99041 3.15913 3.27166 3.33738 3.89860 3.94619 4.15427 4.42792 4.86104 5.02046 5.07310 5.13963 5.30434 5.42125 5.60195 5.79486 5.81930 5.92297 6.01977 6.18354 6.25788 6.29554 6.37002 6.49015 6.53876 6.88031 7.26807 7.27146 7.60910 7.88556 8.24612 8.51113 9.18996 9.42306 10.01104 10.71606 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025056 B = 0.004417 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.227726 B = 6338.026247 C = 6724.727662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.438 5.438 4 C -0.307 4.307 5 H 0.093 0.907 6 C 0.035 3.965 7 N -0.869 5.869 8 Si 0.917 3.083 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.462 3.538 13 O -0.582 6.582 14 C -0.126 4.126 15 C -0.033 4.033 16 C 0.081 3.919 17 O -0.193 6.193 18 C 0.168 3.832 19 N -0.448 5.448 20 C -0.073 4.073 21 C 0.567 3.433 22 O -0.489 6.489 23 O -0.501 6.501 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.114 0.886 28 H 0.047 0.953 29 H 0.267 0.733 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.257 0.743 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.732 -2.998 14.071 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.030 4.030 3 N -0.157 5.157 4 C -0.434 4.434 5 H 0.111 0.889 6 C -0.169 4.169 7 N -0.507 5.507 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.250 3.750 13 O -0.467 6.467 14 C -0.166 4.166 15 C -0.070 4.070 16 C 0.024 3.976 17 O -0.079 6.079 18 C -0.061 4.061 19 N -0.176 5.176 20 C -0.190 4.190 21 C 0.409 3.591 22 O -0.375 6.375 23 O -0.312 6.312 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.132 0.868 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.142 0.858 34 H 0.272 0.728 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.480 -2.762 14.248 15.514 hybrid contribution 0.195 0.114 -1.234 1.254 sum -5.285 -2.649 13.015 14.294 Atomic orbital electron populations 1.22209 0.98225 1.00339 1.01468 1.21608 0.91694 0.85552 1.04193 1.43505 1.55531 1.11807 1.04873 1.19512 1.39726 0.95509 0.88687 0.88885 1.25338 0.94517 0.96512 1.00551 1.69934 1.32641 1.15331 1.32786 0.86022 0.78129 0.79091 0.82398 1.19169 1.20781 1.20637 1.19995 0.82624 0.87926 0.84504 1.90522 1.50608 1.18756 1.86767 1.21565 1.02561 0.99128 0.93355 1.20342 1.05424 0.97659 0.83576 1.24200 0.81241 0.95976 0.96168 1.84453 1.32839 1.58156 1.32430 1.28077 0.97008 0.93640 0.87346 1.70809 1.02978 1.21208 1.22628 1.20156 0.94051 1.08652 0.96172 1.19050 0.84881 0.75117 0.80033 1.91052 1.70146 1.49074 1.27276 1.84619 1.29051 1.66992 1.50496 0.92356 0.93103 0.93990 0.86810 0.93490 0.92281 0.89654 0.90154 0.88490 0.85776 0.72769 0.72679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.15 37.16 0.38 -2.56 16 2 C 0.09 2.05 5.43 -4.04 -0.02 2.02 16 3 N -0.44 -11.14 2.56 -114.81 -0.29 -11.44 16 4 C -0.31 -8.52 8.98 -14.93 -0.13 -8.66 16 5 H 0.09 2.71 7.70 -52.49 -0.40 2.30 16 6 C 0.03 0.92 4.92 -17.47 -0.09 0.83 16 7 N -0.87 -23.53 11.33 55.50 0.63 -22.90 16 8 Si 0.92 20.58 29.61 -169.99 -5.03 15.55 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.46 11.26 7.59 -10.98 -0.08 11.18 16 13 O -0.58 -16.09 15.81 5.55 0.09 -16.00 16 14 C -0.13 -2.34 4.29 -27.89 -0.12 -2.46 16 15 C -0.03 -0.54 4.49 -27.88 -0.13 -0.67 16 16 C 0.08 1.18 6.70 -35.05 -0.23 0.95 16 17 O -0.19 -2.34 10.72 6.57 0.07 -2.27 16 18 C 0.17 1.64 13.19 51.95 0.69 2.33 16 19 N -0.45 -5.96 11.36 -11.50 -0.13 -6.09 16 20 C -0.07 -1.09 7.04 -83.04 -0.58 -1.67 16 21 C 0.57 8.60 8.33 34.40 0.29 8.88 16 22 O -0.49 -8.75 15.60 -19.30 -0.30 -9.05 16 23 O -0.50 -6.02 13.44 -40.69 -0.55 -6.57 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.69 6.59 -51.93 -0.34 0.35 16 27 H 0.11 2.75 5.34 -51.93 -0.28 2.47 16 28 H 0.05 0.95 6.66 -51.93 -0.35 0.60 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.09 1.60 7.41 -51.93 -0.38 1.22 16 31 H 0.08 1.32 6.53 -51.93 -0.34 0.98 16 32 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 33 H 0.12 2.32 6.45 -51.93 -0.34 1.98 16 34 H 0.26 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.41 2.89 9.11 45.56 0.42 3.31 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -35.07 309.41 -3.73 -38.80 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -2.84 Total: 5.14 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -0.04 Total: 10.17 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.20 Total: -40.43 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.69 Total: -33.88 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.07 -3.73 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.456 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds