Wall clock time and date at job start Tue Mar 31 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47219 * 2 1 4 4 C 1.37093 * 120.00532 * 264.75312 * 3 2 1 5 5 H 1.07995 * 120.00555 * 146.16616 * 4 3 2 6 6 C 1.38960 * 119.99468 * 326.16185 * 4 3 2 7 7 N 1.31401 * 120.00201 * 337.68818 * 6 4 3 8 8 Si 1.86806 * 119.99502 * 157.68697 * 6 4 3 9 9 H 1.48499 * 109.47199 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47088 * 120.00253 * 8 6 4 11 11 H 1.48501 * 109.46821 * 240.00253 * 8 6 4 12 12 C 1.34784 * 119.99566 * 84.75131 * 3 2 1 13 13 O 1.21289 * 119.99672 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99843 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.46845 * 179.97438 * 14 12 3 16 16 C 1.50703 * 109.47323 * 179.97438 * 15 14 12 17 17 O 1.34221 * 126.53404 * 270.16675 * 16 15 14 18 18 C 1.34064 * 108.24443 * 180.22514 * 17 16 15 19 19 N 1.29916 * 109.25792 * 359.77337 * 18 17 16 20 20 C 1.36108 * 108.47634 * 359.97438 * 19 18 17 21 21 C 1.47270 * 126.45863 * 179.97438 * 20 19 18 22 22 O 1.21538 * 119.99811 * 179.75484 * 21 20 19 23 23 O 1.34773 * 120.00075 * 0.02562 * 21 20 19 24 24 H 1.08997 * 109.46934 * 59.99530 * 1 2 3 25 25 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.46857 * 299.99664 * 1 2 3 27 27 H 1.09004 * 109.46695 * 240.00180 * 2 1 3 28 28 H 1.08992 * 109.47326 * 120.00719 * 2 1 3 29 29 H 0.97002 * 120.00280 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46889 * 60.00440 * 14 12 3 31 31 H 1.08997 * 109.47396 * 300.00222 * 14 12 3 32 32 H 1.09006 * 109.47283 * 60.00255 * 15 14 12 33 33 H 1.08997 * 109.47388 * 300.00329 * 15 14 12 34 34 H 1.07997 * 125.36896 * 179.73118 * 18 17 16 35 35 H 0.96707 * 116.99969 * 179.72106 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3493 1.9914 -1.1822 5 1 2.1815 3.0507 -1.3087 6 6 2.9007 1.2467 -2.2178 7 7 3.5051 0.1089 -1.9595 8 14 2.7826 1.8633 -3.9772 9 1 2.0582 3.1594 -3.9999 10 1 4.1484 2.0493 -4.5293 11 1 2.0465 0.8709 -4.8011 12 6 2.1423 2.0521 1.1624 13 8 2.5471 3.1954 1.1625 14 6 1.7780 1.3815 2.4619 15 6 2.0098 2.3540 3.6200 16 6 1.6450 1.6838 4.9196 17 8 0.4386 1.6850 5.5080 18 6 0.5268 0.9839 6.6474 19 7 1.7410 0.5433 6.7865 20 6 2.4756 0.9586 5.7187 21 6 3.9016 0.6818 5.4766 22 8 4.4422 1.1093 4.4755 23 8 4.6058 -0.0503 6.3624 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 3.8897 -0.4111 -2.6824 30 1 2.3994 0.4969 2.6009 31 1 0.7285 1.0883 2.4377 32 1 1.3888 3.2391 3.4813 33 1 3.0595 2.6469 3.6440 34 1 -0.2836 0.8131 7.3405 35 1 5.5377 -0.2090 6.1584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596200035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:08 Heat of formation + Delta-G solvation = -127.143718 kcal Electronic energy + Delta-G solvation = -22245.593858 eV Core-core repulsion = 18630.747094 eV Total energy + Delta-G solvation = -3614.846764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.59898 -41.07277 -40.51480 -37.29877 -37.00220 -35.97393 -35.10315 -33.92996 -31.21601 -30.79411 -27.74013 -26.29971 -25.03601 -23.88004 -23.31727 -21.82191 -20.58928 -19.48264 -18.82334 -18.63134 -18.04890 -17.79874 -17.04449 -16.78938 -16.55415 -16.34670 -15.99446 -15.70558 -14.80921 -14.66365 -14.49120 -14.34643 -13.98801 -13.58320 -13.36249 -13.32632 -12.84781 -12.80766 -12.63575 -12.50703 -12.46826 -12.20133 -12.07101 -12.00170 -11.82537 -11.64061 -10.90857 -10.47006 -10.11761 -9.47783 -8.34312 -6.03861 -0.24869 0.88147 1.34203 1.36272 1.42251 1.56360 1.90080 1.94834 2.02301 2.30435 3.01271 3.02029 3.15385 3.42117 3.79034 3.94093 4.03434 4.17286 4.25735 4.35578 4.45147 4.55480 4.63482 4.82508 4.91464 4.96684 5.05523 5.13636 5.31428 5.43887 5.46768 5.57745 6.20274 6.34940 6.52406 6.89155 7.17361 7.47208 8.05640 8.68283 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025056 B = 0.004417 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.227726 B = 6338.026247 C = 6724.727662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.091 3.909 3 N -0.452 5.452 4 C -0.342 4.342 5 H 0.066 0.934 6 C 0.002 3.998 7 N -0.890 5.890 8 Si 0.983 3.017 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.263 1.263 12 C 0.447 3.553 13 O -0.627 6.627 14 C -0.108 4.108 15 C -0.022 4.022 16 C 0.070 3.930 17 O -0.190 6.190 18 C 0.206 3.794 19 N -0.481 5.481 20 C -0.082 4.082 21 C 0.568 3.432 22 O -0.527 6.527 23 O -0.493 6.493 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.274 0.726 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.315 0.685 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.651 -4.299 15.273 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 N -0.171 5.171 4 C -0.470 4.470 5 H 0.084 0.916 6 C -0.201 4.201 7 N -0.528 5.528 8 Si 0.806 3.194 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.187 1.187 12 C 0.237 3.763 13 O -0.514 6.514 14 C -0.148 4.148 15 C -0.060 4.060 16 C 0.012 3.988 17 O -0.076 6.076 18 C -0.022 4.022 19 N -0.209 5.209 20 C -0.198 4.198 21 C 0.412 3.588 22 O -0.417 6.417 23 O -0.306 6.306 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.330 0.670 35 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -7.386 -4.120 15.479 17.639 hybrid contribution 0.800 0.466 -1.469 1.737 sum -6.585 -3.654 14.010 15.905 Atomic orbital electron populations 1.22096 0.94933 1.02546 1.01522 1.21712 0.94378 0.83498 1.03596 1.43805 1.55579 1.13020 1.04647 1.19469 1.41795 0.94954 0.90748 0.91568 1.26096 0.93465 0.96560 1.03931 1.70005 1.32537 1.16074 1.34173 0.85058 0.78102 0.78748 0.77502 1.19433 1.20589 1.18742 1.20928 0.81701 0.87586 0.86112 1.90477 1.52421 1.20810 1.87698 1.21401 1.03954 0.98710 0.90759 1.19971 1.04097 0.97543 0.84409 1.23533 0.82371 0.97003 0.95887 1.84467 1.31460 1.58519 1.33166 1.29462 0.97103 0.89662 0.85993 1.70840 1.04345 1.23118 1.22547 1.20230 0.94038 1.08654 0.96875 1.19245 0.85354 0.74596 0.79642 1.91042 1.71037 1.50721 1.28910 1.84581 1.30670 1.65907 1.49488 0.93770 0.89732 0.92458 0.89201 0.92166 0.91666 0.89756 0.87316 0.88276 0.88384 0.67016 0.70336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 10.15 71.98 0.73 -4.46 16 2 C 0.09 3.97 5.43 86.38 0.47 4.44 16 3 N -0.45 -23.53 2.56 -635.53 -1.63 -25.16 16 4 C -0.34 -19.66 8.98 84.04 0.75 -18.90 16 5 H 0.07 4.07 7.70 -2.91 -0.02 4.05 16 6 C 0.00 0.09 4.92 84.93 0.42 0.51 16 7 N -0.89 -48.69 11.33 21.67 0.25 -48.44 16 8 Si 0.98 42.60 29.61 68.60 2.03 44.63 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 C 0.45 22.45 7.59 87.66 0.67 23.11 16 13 O -0.63 -36.29 15.81 -3.06 -0.05 -36.34 16 14 C -0.11 -4.02 4.29 29.85 0.13 -3.90 16 15 C -0.02 -0.76 4.49 29.85 0.13 -0.63 16 16 C 0.07 1.94 6.70 25.21 0.17 2.11 16 17 O -0.19 -4.00 10.72 0.60 0.01 -4.00 16 18 C 0.21 3.14 13.19 130.53 1.72 4.86 16 19 N -0.48 -11.47 11.36 -305.21 -3.47 -14.94 16 20 C -0.08 -2.34 7.04 40.38 0.28 -2.06 16 21 C 0.57 17.16 8.33 70.20 0.58 17.74 16 22 O -0.53 -19.47 15.60 19.71 0.31 -19.16 16 23 O -0.49 -11.42 13.44 -56.84 -0.76 -12.18 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.06 1.75 6.59 -2.39 -0.02 1.74 16 27 H 0.09 4.37 5.34 -2.39 -0.01 4.36 16 28 H 0.06 2.40 6.66 -2.39 -0.02 2.38 16 29 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.08 3.16 7.41 -2.39 -0.02 3.14 16 31 H 0.11 3.38 6.53 -2.39 -0.02 3.36 16 32 H 0.10 3.23 8.10 -2.38 -0.02 3.21 16 33 H 0.10 3.86 6.45 -2.39 -0.02 3.84 16 34 H 0.32 0.38 8.06 -2.91 -0.02 0.35 16 35 H 0.43 5.69 9.11 -74.05 -0.67 5.02 16 Total: -1.00 -79.75 309.41 3.22 -76.52 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.48 Total: 16.23 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 6.06 Total: 22.83 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -4.85 Total: -88.54 kcal Atomic # 8 Polarization: -71.18 SS G_CDS: -0.50 Total: -71.68 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -79.75 3.22 -76.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.622 kcal (2) G-P(sol) polarization free energy of solvation -79.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds