Wall clock time and date at job start Tue Mar 31 2020 05:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38127 * 126.29903 * 2 1 4 4 C 1.47287 * 126.42381 * 359.97438 * 3 2 1 5 5 O 1.21520 * 120.00239 * 0.02562 * 4 3 2 6 6 O 1.34752 * 119.99649 * 179.97438 * 4 3 2 7 7 C 1.45206 * 116.99876 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.46708 * 30.00605 * 7 6 4 9 9 C 1.52997 * 109.47147 * 269.99948 * 7 6 4 10 10 C 1.50708 * 109.46889 * 150.00052 * 7 6 4 11 11 O 1.20817 * 120.00048 * 5.00055 * 10 7 6 12 12 O 1.34231 * 119.99753 * 184.99984 * 10 7 6 13 13 C 1.41345 * 107.14675 * 180.24392 * 3 2 1 14 14 N 1.30431 * 108.01075 * 359.58900 * 13 3 2 15 15 N 1.34221 * 126.29255 * 180.02562 * 2 1 3 16 16 C 1.46497 * 125.74514 * 359.97438 * 15 2 1 17 17 C 1.50703 * 109.46905 * 90.00491 * 16 15 2 18 18 H 1.07997 * 119.99980 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99868 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99820 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99695 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47041 * 60.00188 * 21 19 17 23 23 H 1.48498 * 109.46703 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47014 * 300.00083 * 21 19 17 25 25 H 1.09001 * 109.47027 * 89.97130 * 1 2 3 26 26 H 1.08993 * 109.47145 * 209.97543 * 1 2 3 27 27 H 1.09002 * 109.46752 * 329.97657 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 29 29 H 1.09001 * 109.46832 * 60.00119 * 9 7 6 30 30 H 1.09004 * 109.47261 * 300.00100 * 9 7 6 31 31 H 0.96695 * 116.99889 * 179.97438 * 12 10 7 32 32 H 1.07991 * 125.99195 * 179.76304 * 13 3 2 33 33 H 1.08998 * 109.47357 * 210.00016 * 16 15 2 34 34 H 1.09003 * 109.47440 * 330.00443 * 16 15 2 35 35 H 0.96997 * 119.99298 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 -0.0005 5 8 0.7019 2.7873 -0.0006 6 8 2.8016 3.5095 0.0001 7 6 2.2984 4.8716 0.0001 8 1 1.3375 4.9039 0.5135 9 6 2.1224 5.3503 -1.4424 10 6 3.2783 5.7691 0.7111 11 8 4.3366 5.3270 1.0910 12 8 2.9753 7.0596 0.9223 13 6 3.6599 0.6495 -0.0057 14 7 3.6340 -0.6545 0.0000 15 7 2.3015 -1.0818 -0.0005 16 6 1.8497 -2.4754 -0.0006 17 6 1.6944 -2.9530 -1.4215 18 1 1.9102 -2.2851 -2.2423 19 6 1.2758 -4.2423 -1.6735 20 7 1.0125 -5.0554 -0.6740 21 14 1.0826 -4.8340 -3.4348 22 1 2.3884 -4.7374 -4.1355 23 1 0.6236 -6.2463 -3.4349 24 1 0.0818 -3.9887 -4.1340 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3633 -0.8901 0.5134 27 1 -0.3633 0.8898 0.5142 28 1 1.7442 6.3726 -1.4424 29 1 1.4136 4.7011 -1.9566 30 1 3.0834 5.3179 -1.9558 31 1 3.6352 7.5957 1.3828 32 1 4.5461 1.2667 -0.0108 33 1 2.5844 -3.0956 0.5129 34 1 0.8912 -2.5467 0.5135 35 1 0.7184 -5.9625 -0.8514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600007992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:46 Heat of formation + Delta-G solvation = -130.937722 kcal Electronic energy + Delta-G solvation = -21676.370888 eV Core-core repulsion = 18061.359603 eV Total energy + Delta-G solvation = -3615.011284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.50108 -41.70390 -40.68890 -37.67068 -37.07069 -35.84413 -33.95891 -33.28067 -32.69544 -29.41233 -28.36149 -26.41981 -25.49859 -24.17069 -22.51526 -21.52286 -20.59235 -19.33294 -18.87223 -18.62969 -18.32469 -17.38336 -17.19357 -16.69331 -16.49298 -16.23887 -15.87195 -15.17412 -14.79977 -14.48773 -14.37065 -14.11417 -13.90965 -13.72195 -13.60571 -13.30526 -13.15453 -13.01138 -12.73754 -12.67585 -12.64910 -12.31063 -11.99201 -11.90950 -11.88958 -11.48943 -11.35506 -10.75454 -10.35114 -9.70193 -8.38032 -6.54391 0.37009 0.99813 1.03133 1.14615 1.39635 1.40845 1.49151 1.66049 2.15194 2.31305 2.34437 2.94945 3.62471 3.64745 3.75191 3.79204 3.95291 4.08950 4.17652 4.44307 4.59355 4.64465 4.69789 4.78217 4.87899 4.96670 5.10750 5.11897 5.27078 5.48528 5.50211 5.56104 5.73422 5.95360 6.53441 6.66178 6.78240 6.89464 7.16842 8.69957 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034598 B = 0.003490 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.100610 B = 8022.078021 C = 8180.753327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.166 3.834 3 C -0.323 4.323 4 C 0.564 3.436 5 O -0.529 6.529 6 O -0.338 6.338 7 C 0.089 3.911 8 H 0.131 0.869 9 C -0.158 4.158 10 C 0.495 3.505 11 O -0.531 6.531 12 O -0.494 6.494 13 C 0.096 3.904 14 N -0.335 5.335 15 N -0.332 5.332 16 C 0.266 3.734 17 C -0.559 4.559 18 H 0.054 0.946 19 C 0.026 3.974 20 N -0.916 5.916 21 Si 0.971 3.029 22 H -0.275 1.275 23 H -0.274 1.274 24 H -0.264 1.264 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.437 0.563 32 H 0.218 0.782 33 H 0.033 0.967 34 H 0.058 0.942 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 21.509 0.804 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.029 3.971 3 C -0.336 4.336 4 C 0.412 3.588 5 O -0.420 6.420 6 O -0.255 6.255 7 C 0.033 3.967 8 H 0.149 0.851 9 C -0.215 4.215 10 C 0.337 3.663 11 O -0.420 6.420 12 O -0.309 6.309 13 C -0.091 4.091 14 N -0.154 5.154 15 N -0.108 5.108 16 C 0.147 3.853 17 C -0.597 4.597 18 H 0.072 0.928 19 C -0.176 4.176 20 N -0.554 5.554 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.199 1.199 24 H -0.189 1.189 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.301 0.699 32 H 0.234 0.766 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.221 19.826 0.783 19.843 hybrid contribution 0.119 0.304 -0.273 0.426 sum -0.101 20.130 0.510 20.137 Atomic orbital electron populations 1.20692 0.84702 1.04767 1.04724 1.21982 0.96210 0.86073 0.92832 1.18961 0.93745 0.89803 1.31086 1.19700 0.83240 0.84543 0.71351 1.90753 1.17849 1.84263 1.49145 1.86619 1.39295 1.14972 1.84619 1.22097 0.96459 0.77940 1.00225 0.85113 1.22170 1.04153 1.04329 0.90843 1.22721 0.85631 0.82112 0.75856 1.90773 1.26428 1.76108 1.48726 1.84410 1.52712 1.20649 1.73177 1.24502 0.97896 0.91317 0.95382 1.77195 0.98322 1.14024 1.25818 1.49216 1.03331 1.08013 1.50280 1.19477 0.95615 0.71781 0.98392 1.21368 1.48173 0.98625 0.91487 0.92771 1.25714 0.93755 0.95876 1.02257 1.69983 1.44639 1.07635 1.33118 0.85403 0.78817 0.77687 0.78611 1.20003 1.19881 1.18881 0.88902 0.90335 0.87425 0.86723 0.90589 0.90763 0.69914 0.76603 0.94891 0.92444 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.02 9.57 71.24 0.68 -2.34 16 2 C 0.17 6.57 7.01 42.17 0.30 6.87 16 3 C -0.32 -11.80 6.13 -20.16 -0.12 -11.92 16 4 C 0.56 18.04 7.93 70.20 0.56 18.60 16 5 O -0.53 -17.13 14.10 19.77 0.28 -16.86 16 6 O -0.34 -9.53 9.27 -50.24 -0.47 -10.00 16 7 C 0.09 1.83 3.09 29.85 0.09 1.92 16 8 H 0.13 2.50 7.16 -2.39 -0.02 2.49 16 9 C -0.16 -2.44 9.53 71.98 0.69 -1.75 16 10 C 0.50 9.66 7.66 71.24 0.55 10.21 16 11 O -0.53 -14.61 17.27 28.34 0.49 -14.12 16 12 O -0.49 -5.41 13.42 -51.42 -0.69 -6.10 16 13 C 0.10 3.53 11.87 85.67 1.02 4.55 16 14 N -0.33 -14.82 12.50 -56.25 -0.70 -15.52 16 15 N -0.33 -15.15 3.56 -336.66 -1.20 -16.35 16 16 C 0.27 13.38 5.97 85.63 0.51 13.89 16 17 C -0.56 -30.09 9.39 25.60 0.24 -29.85 16 18 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 19 C 0.03 1.36 5.46 84.66 0.46 1.82 16 20 N -0.92 -50.37 13.29 21.45 0.28 -50.08 16 21 Si 0.97 41.79 29.54 68.60 2.03 43.81 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 25 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 26 H 0.08 2.58 7.05 -2.39 -0.02 2.56 16 27 H 0.11 3.23 6.51 -2.39 -0.02 3.22 16 28 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.44 0.92 9.10 -74.06 -0.67 0.25 16 32 H 0.22 6.30 8.06 -2.92 -0.02 6.28 16 33 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.85 7.01 -2.39 -0.02 2.83 16 35 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -68.33 319.56 5.45 -62.88 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.47 Total: 10.33 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 4.96 Total: 12.00 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.62 Total: -81.95 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -0.39 Total: -47.07 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -68.33 5.45 -62.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600007992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.059 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds