Wall clock time and date at job start Tue Mar 31 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30009 * 127.33193 * 2 1 4 4 O 1.20657 * 112.32188 * 180.28345 * 3 2 1 5 5 C 1.33525 * 113.15671 * 359.73232 * 4 3 2 6 6 C 1.50700 * 126.83437 * 179.97438 * 5 4 3 7 7 C 1.37423 * 106.32695 * 0.02562 * 5 4 3 8 8 C 1.47326 * 128.57163 * 179.97438 * 7 5 4 9 9 O 1.21632 * 120.00007 * 85.17500 * 8 7 5 10 10 N 1.34772 * 119.99944 * 265.17358 * 8 7 5 11 11 C 1.36975 * 119.99920 * 4.45970 * 10 8 7 12 12 H 1.07992 * 120.00445 * 41.22088 * 11 10 8 13 13 C 1.38985 * 119.99701 * 221.49649 * 11 10 8 14 14 N 1.31411 * 119.99823 * 7.41807 * 13 11 10 15 15 Si 1.86798 * 120.00058 * 187.41961 * 13 11 10 16 16 H 1.48504 * 109.47233 * 59.99583 * 15 13 11 17 17 H 1.48498 * 109.47108 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46931 * 299.99799 * 15 13 11 19 19 C 1.46498 * 120.00118 * 184.45222 * 10 8 7 20 20 C 1.53004 * 109.47399 * 270.00290 * 19 10 8 21 21 C 1.50695 * 109.47212 * 179.97438 * 20 19 10 22 22 O 1.20827 * 119.99881 * 359.97438 * 21 20 19 23 23 O 1.34228 * 120.00160 * 180.02562 * 21 20 19 24 24 H 1.08999 * 109.47074 * 270.13205 * 1 2 3 25 25 H 1.09005 * 109.46908 * 30.13517 * 1 2 3 26 26 H 1.09001 * 109.47331 * 150.13523 * 1 2 3 27 27 H 1.09003 * 109.47316 * 269.99961 * 6 5 4 28 28 H 1.08994 * 109.47299 * 30.01068 * 6 5 4 29 29 H 1.09003 * 109.46666 * 150.00806 * 6 5 4 30 30 H 0.96999 * 119.99769 * 184.99957 * 14 13 11 31 31 H 1.09007 * 109.46736 * 30.00263 * 19 10 8 32 32 H 1.08997 * 109.47430 * 150.00203 * 19 10 8 33 33 H 1.08992 * 109.46814 * 300.00054 * 20 19 10 34 34 H 1.09002 * 109.46885 * 60.00086 * 20 19 10 35 35 H 0.96703 * 117.00202 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4608 0.7213 -0.0055 5 6 3.6500 -0.6005 -0.0045 6 6 4.9720 -1.3239 -0.0107 7 6 2.3993 -1.1698 0.0022 8 6 2.0404 -2.5987 0.0055 9 8 1.9834 -3.2090 1.0560 10 7 1.7754 -3.2295 -1.1556 11 6 1.9281 -2.5676 -2.3451 12 1 2.7789 -1.9201 -2.4974 13 6 0.9852 -2.7249 -3.3539 14 7 -0.1241 -3.3890 -3.1186 15 14 1.2946 -1.9924 -5.0442 16 1 2.5340 -2.5761 -5.6173 17 1 0.1461 -2.2987 -5.9343 18 1 1.4501 -0.5203 -4.9247 19 6 1.3241 -4.6232 -1.1456 20 6 2.5374 -5.5528 -1.2135 21 6 2.0732 -6.9864 -1.2026 22 8 0.8929 -7.2388 -1.1459 23 8 2.9708 -7.9830 -1.2549 24 1 -0.3633 0.0024 1.0277 25 1 -0.3633 0.8888 -0.5160 26 1 -0.3634 -0.8912 -0.5117 27 1 5.2850 -1.5000 -1.0399 28 1 5.7208 -0.7169 0.4981 29 1 4.8663 -2.2783 0.5051 30 1 -0.7486 -3.5613 -3.8406 31 1 0.7677 -4.8184 -0.2288 32 1 0.6802 -4.8029 -2.0066 33 1 3.0937 -5.3576 -2.1303 34 1 3.1813 -5.3733 -0.3525 35 1 2.6252 -8.8862 -1.2458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600806511.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:00 Heat of formation + Delta-G solvation = -70.714046 kcal Electronic energy + Delta-G solvation = -22830.924002 eV Core-core repulsion = 19218.524212 eV Total energy + Delta-G solvation = -3612.399790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.16562 -39.85348 -38.59238 -35.83890 -35.06862 -33.87201 -32.96789 -32.01826 -30.60237 -28.16936 -27.48564 -25.36205 -24.71742 -22.68147 -20.58616 -19.78616 -19.13488 -17.89372 -17.53974 -17.15463 -16.32949 -15.89678 -15.80764 -15.41364 -14.54165 -14.46643 -14.02977 -13.37722 -13.15006 -13.03835 -12.77135 -12.67544 -12.52628 -12.49257 -12.21359 -11.95836 -11.70333 -11.25983 -11.19306 -11.14926 -10.94098 -10.53053 -10.45351 -10.17281 -10.12205 -9.32938 -9.24826 -8.94785 -8.57007 -7.73844 -6.43662 -4.34446 1.99241 2.63943 2.64766 3.04046 3.13571 3.13847 3.33552 3.45679 3.65016 3.99882 4.56051 4.82064 4.89769 4.94493 5.51211 5.56550 5.65420 5.70398 5.76954 5.91462 5.93474 6.00068 6.10446 6.14658 6.23083 6.30432 6.42997 6.68718 6.78744 6.84201 7.21239 7.42671 7.70847 8.20449 8.28310 8.85239 8.89353 9.23464 9.66324 10.51176 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.007368 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.709795 B = 3799.525859 C = 4775.878047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.058 3.942 3 N -0.373 5.373 4 O 0.083 5.917 5 C -0.023 4.023 6 C -0.067 4.067 7 C -0.179 4.179 8 C 0.546 3.454 9 O -0.589 6.589 10 N -0.422 5.422 11 C -0.337 4.337 12 H 0.088 0.912 13 C 0.048 3.952 14 N -0.859 5.859 15 Si 0.916 3.084 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.271 1.271 19 C 0.117 3.883 20 C -0.124 4.124 21 C 0.483 3.517 22 O -0.513 6.513 23 O -0.525 6.525 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.274 0.726 31 H 0.064 0.936 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 -0.816 0.733 6.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 N -0.082 5.082 4 O 0.021 5.979 5 C -0.085 4.085 6 C -0.124 4.124 7 C -0.186 4.186 8 C 0.333 3.667 9 O -0.475 6.475 10 N -0.139 5.139 11 C -0.465 4.465 12 H 0.105 0.895 13 C -0.159 4.159 14 N -0.496 5.496 15 Si 0.742 3.258 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.196 1.196 19 C -0.006 4.006 20 C -0.163 4.163 21 C 0.325 3.675 22 O -0.401 6.401 23 O -0.337 6.337 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.149 0.851 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 5.848 0.505 1.142 5.980 hybrid contribution -0.215 -1.049 -1.026 1.483 sum 5.633 -0.544 0.116 5.660 Atomic orbital electron populations 1.20145 0.85778 1.04351 1.02729 1.24623 0.98362 0.86947 1.00415 1.73467 0.89336 1.23762 1.21586 1.84399 1.21443 1.22910 1.69103 1.24375 0.97509 0.83545 1.03120 1.20270 0.89092 0.99055 1.03992 1.21932 0.91808 0.95997 1.08868 1.17228 0.81548 0.83778 0.84125 1.90676 1.57951 1.67038 1.31786 1.43294 1.57295 1.08897 1.04409 1.19357 1.07800 1.28133 0.91166 0.89481 1.25478 0.93457 0.96495 1.00474 1.69693 1.08472 1.38210 1.33181 0.86153 0.78211 0.79875 0.81523 1.19613 1.20611 1.19596 1.21476 0.93536 0.79575 1.06017 1.21834 1.02978 0.86281 1.05175 1.23755 0.83999 0.88547 0.71159 1.90706 1.18808 1.85104 1.45461 1.84587 1.43752 1.19257 1.86069 0.90681 0.90871 0.88884 0.89370 0.90217 0.89221 0.91531 0.91720 0.85084 0.87680 0.88626 0.74117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.49 36.00 0.38 -0.94 16 2 C 0.06 1.20 7.59 -79.76 -0.61 0.59 16 3 N -0.37 -7.46 12.01 34.79 0.42 -7.04 16 4 O 0.08 1.54 11.06 18.57 0.21 1.75 16 5 C -0.02 -0.41 7.55 -34.61 -0.26 -0.67 16 6 C -0.07 -0.91 10.33 36.01 0.37 -0.53 16 7 C -0.18 -3.84 4.79 -102.89 -0.49 -4.34 16 8 C 0.55 12.85 7.41 -12.57 -0.09 12.76 16 9 O -0.59 -15.07 16.73 5.25 0.09 -14.98 16 10 N -0.42 -9.91 2.51 -116.06 -0.29 -10.20 16 11 C -0.34 -7.96 8.55 -14.98 -0.13 -8.08 16 12 H 0.09 2.03 7.52 -52.49 -0.39 1.63 16 13 C 0.05 1.13 5.24 -17.45 -0.09 1.03 16 14 N -0.86 -21.44 10.93 55.50 0.61 -20.84 16 15 Si 0.92 18.77 29.56 -169.99 -5.03 13.75 16 16 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 C 0.12 2.67 4.25 -4.04 -0.02 2.66 16 20 C -0.12 -2.31 6.14 -27.88 -0.17 -2.48 16 21 C 0.48 8.53 8.33 36.00 0.30 8.83 16 22 O -0.51 -10.62 16.74 -18.75 -0.31 -10.93 16 23 O -0.52 -7.16 13.42 -39.25 -0.53 -7.69 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 30 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 31 H 0.06 1.58 7.44 -51.93 -0.39 1.20 16 32 H 0.13 3.25 5.21 -51.93 -0.27 2.98 16 33 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.40 3.56 9.10 45.56 0.41 3.98 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -30.51 317.66 -4.02 -34.53 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.15 Total: 8.05 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.81 Total: 8.81 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.73 Total: -38.07 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.55 Total: -31.86 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.51 -4.02 -34.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600806511.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.186 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds