Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28454 * 125.06152 * 2 1 4 4 C 1.32008 * 110.50621 * 180.02562 * 3 2 1 5 5 C 1.47633 * 126.27096 * 179.97438 * 4 3 2 6 6 O 1.21481 * 119.99960 * 180.02562 * 5 4 3 7 7 O 1.34726 * 119.99992 * 0.02562 * 5 4 3 8 8 C 1.40925 * 107.46031 * 359.97438 * 4 3 2 9 9 C 1.36801 * 125.06963 * 179.97438 * 2 1 3 10 10 C 1.47064 * 126.64918 * 359.96889 * 9 2 1 11 11 O 1.21542 * 120.00338 * 179.97438 * 10 9 2 12 12 O 1.34804 * 119.99940 * 359.97438 * 10 9 2 13 13 C 1.45208 * 117.00171 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47143 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47394 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47345 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00423 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99652 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00332 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47573 * 89.99598 * 20 18 16 22 22 H 1.48499 * 109.47313 * 210.00209 * 20 18 16 23 23 H 1.48506 * 109.46775 * 329.99325 * 20 18 16 24 24 H 1.08995 * 109.47025 * 90.02940 * 1 2 3 25 25 H 1.09009 * 109.46527 * 210.02854 * 1 2 3 26 26 H 1.08996 * 109.47514 * 330.01913 * 1 2 3 27 27 H 0.96696 * 117.00057 * 179.97438 * 7 5 4 28 28 H 1.08000 * 127.27046 * 180.02562 * 8 4 3 29 29 H 1.09007 * 109.46728 * 299.99657 * 13 12 10 30 30 H 1.08995 * 109.47271 * 59.99770 * 13 12 10 31 31 H 1.08999 * 109.47209 * 299.99766 * 14 13 12 32 32 H 1.09009 * 109.47362 * 59.99736 * 14 13 12 33 33 H 1.08999 * 109.47038 * 300.00222 * 15 14 13 34 34 H 1.09001 * 109.46949 * 59.99457 * 15 14 13 35 35 H 0.96994 * 120.00321 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2029 1.0514 0.0000 4 6 3.4806 0.7197 -0.0006 5 6 4.6251 1.6522 -0.0013 6 8 5.7606 1.2203 -0.0022 7 8 4.4103 2.9823 -0.0009 8 6 3.5521 -0.6878 -0.0003 9 6 2.2510 -1.1197 0.0005 10 6 1.7897 -2.5161 0.0018 11 8 2.5985 -3.4233 0.0016 12 8 0.4698 -2.7899 0.0031 13 6 0.0870 -4.1906 0.0049 14 6 -1.4388 -4.3023 0.0068 15 6 -1.8422 -5.7782 0.0080 16 6 -3.3451 -5.8882 0.0106 17 1 -3.9520 -4.9949 0.0117 18 6 -3.9454 -7.1295 0.0126 19 7 -3.2064 -8.2174 0.0118 20 14 -5.8084 -7.2660 0.0150 21 1 -6.3039 -7.3035 -1.3843 22 1 -6.2127 -8.5107 0.7169 23 1 -6.3898 -6.0922 0.7148 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3634 0.8901 0.5135 27 1 5.1909 3.5530 -0.0010 28 1 4.4435 -1.2974 -0.0003 29 1 0.4862 -4.6774 -0.8850 30 1 0.4876 -4.6756 0.8950 31 1 -1.8377 -3.8156 0.8968 32 1 -1.8399 -3.8171 -0.8832 33 1 -1.4434 -6.2646 -0.8822 34 1 -1.4411 -6.2637 0.8977 35 1 -3.6287 -9.0906 0.0128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601002230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -107.614938 kcal Electronic energy + Delta-G solvation = -20930.457778 eV Core-core repulsion = 17316.457845 eV Total energy + Delta-G solvation = -3613.999933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.17347 -40.32728 -40.06702 -36.76031 -36.43061 -34.24104 -33.84733 -32.01213 -31.48837 -28.28878 -27.37235 -24.92164 -24.12364 -22.86144 -21.43456 -20.75608 -20.36696 -18.68139 -18.09716 -17.16335 -17.09684 -16.61131 -16.29089 -16.24036 -15.65921 -15.37894 -14.54777 -14.32477 -14.17339 -13.81460 -13.55386 -13.17785 -12.80723 -12.34231 -12.26563 -12.08582 -11.92262 -11.60077 -11.23258 -11.06337 -10.90420 -10.78422 -10.62916 -10.58987 -9.89791 -9.81158 -9.67203 -9.63304 -9.26107 -8.46427 -6.11034 -4.14766 0.66264 0.96065 1.79389 2.29067 2.56244 2.76952 2.77671 3.25588 3.32396 3.34824 3.84296 4.23399 4.38043 4.77455 4.85209 4.88231 4.94528 5.18323 5.25082 5.30581 5.40910 5.43128 5.76228 5.82897 5.98435 6.05345 6.19856 6.37792 6.60948 6.82912 7.16285 7.50218 7.53821 7.59295 7.60255 7.86280 8.26185 8.91348 9.50101 11.00291 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.046906 B = 0.002646 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.799296 B =10579.261781 C =11145.008146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.241 5.241 3 N -0.199 5.199 4 C -0.025 4.025 5 C 0.580 3.420 6 O -0.503 6.503 7 O -0.500 6.500 8 C -0.087 4.087 9 C -0.021 4.021 10 C 0.536 3.464 11 O -0.484 6.484 12 O -0.357 6.357 13 C 0.068 3.932 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.098 0.902 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.417 0.583 28 H 0.182 0.818 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.903 20.219 0.042 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.036 5.036 3 N -0.042 5.042 4 C -0.178 4.178 5 C 0.421 3.579 6 O -0.389 6.389 7 O -0.311 6.311 8 C -0.114 4.114 9 C -0.143 4.143 10 C 0.378 3.622 11 O -0.369 6.369 12 O -0.274 6.274 13 C -0.004 4.004 14 C -0.146 4.146 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.116 0.884 25 H 0.138 0.862 26 H 0.122 0.878 27 H 0.275 0.725 28 H 0.199 0.801 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.257 20.190 0.046 22.647 hybrid contribution -0.022 -0.629 -0.036 0.631 sum 10.235 19.561 0.010 22.077 Atomic orbital electron populations 1.22692 0.70680 1.07003 1.06068 1.46176 1.08828 1.01795 1.46804 1.73714 1.02758 1.13226 1.14476 1.20438 0.89890 0.92007 1.15431 1.19056 0.86188 0.80715 0.71953 1.90949 1.22988 1.78664 1.46294 1.84628 1.43521 1.17575 1.85399 1.21837 0.96398 0.92597 1.00576 1.20478 0.91064 0.86887 1.15891 1.19460 0.82116 0.86620 0.74024 1.90930 1.55395 1.45676 1.44924 1.86537 1.23552 1.33875 1.83422 1.23681 0.98685 0.75261 1.02794 1.21800 0.88656 1.02162 1.02004 1.19054 0.96677 0.87777 0.97819 1.21134 0.91368 0.92315 1.51360 0.92427 1.25032 0.98427 0.95868 0.95108 1.69956 1.35291 0.97703 1.50257 0.86544 0.85398 0.77597 0.78167 1.20585 1.21158 1.19816 0.88376 0.86222 0.87771 0.72451 0.80085 0.90946 0.90961 0.92032 0.92009 0.96148 0.96145 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 10.79 59.85 0.65 1.20 16 2 N -0.24 -2.60 3.75 -64.21 -0.24 -2.84 16 3 N -0.20 -2.28 11.97 33.32 0.40 -1.88 16 4 C -0.02 -0.29 7.13 -82.94 -0.59 -0.88 16 5 C 0.58 6.14 8.34 34.57 0.29 6.43 16 6 O -0.50 -6.35 17.70 -19.25 -0.34 -6.69 16 7 O -0.50 -3.83 13.44 -40.56 -0.55 -4.37 16 8 C -0.09 -1.03 10.55 -38.98 -0.41 -1.44 16 9 C -0.02 -0.25 6.90 -82.49 -0.57 -0.82 16 10 C 0.54 7.60 7.93 34.31 0.27 7.88 16 11 O -0.48 -8.10 16.69 -19.30 -0.32 -8.43 16 12 O -0.36 -4.98 7.64 -40.77 -0.31 -5.29 16 13 C 0.07 1.10 5.48 37.15 0.20 1.30 16 14 C -0.11 -2.00 5.53 -26.73 -0.15 -2.14 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.04 9.11 -34.44 -0.31 -14.35 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 20 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.12 0.95 6.11 -51.92 -0.32 0.63 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.42 1.00 9.11 45.56 0.42 1.42 16 28 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 321.98 15.07 4.85 4.85 Total: -1.00 -33.25 321.98 -4.90 -38.15 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -3.25 Total: -3.14 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.86 Total: -0.91 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.89 Total: -30.00 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.52 Total: -24.78 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.25 -4.90 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601002230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.462 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds