Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99373 * 3 2 1 5 5 H 1.48492 * 109.47176 * 29.99592 * 3 2 1 6 6 H 1.48502 * 109.47068 * 150.00076 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00057 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.90351 * 297.58592 * 9 7 2 11 11 C 1.55142 * 110.99048 * 61.45406 * 9 7 2 12 12 C 1.54312 * 103.17714 * 153.83199 * 11 9 7 13 13 N 1.47443 * 107.23612 * 337.62814 * 12 11 9 14 14 C 1.46900 * 111.00227 * 236.74273 * 13 12 11 15 15 C 1.50701 * 109.47223 * 69.87126 * 14 13 12 16 16 O 1.33470 * 126.83730 * 269.69040 * 15 14 13 17 17 N 1.20651 * 113.17748 * 179.77453 * 16 15 14 18 18 C 1.29998 * 112.32078 * 0.50533 * 17 16 15 19 19 C 1.37444 * 126.83606 * 89.99714 * 15 14 13 20 20 C 1.47253 * 128.57342 * 359.97438 * 19 15 14 21 21 O 1.21522 * 120.00174 * 359.97438 * 20 19 15 22 22 O 1.34760 * 119.99680 * 179.97438 * 20 19 15 23 23 C 1.47844 * 108.56494 * 359.01050 * 13 12 11 24 24 H 0.96993 * 120.00152 * 0.02562 * 1 2 3 25 25 H 0.96696 * 113.99925 * 62.41098 * 10 9 7 26 26 H 1.09002 * 110.70816 * 35.36047 * 11 9 7 27 27 H 1.09005 * 110.70106 * 272.30188 * 11 9 7 28 28 H 1.08997 * 109.89327 * 97.03090 * 12 11 9 29 29 H 1.09003 * 109.89220 * 218.21893 * 12 11 9 30 30 H 1.08999 * 109.47147 * 189.87070 * 14 13 12 31 31 H 1.08994 * 109.46907 * 309.87190 * 14 13 12 32 32 H 1.08001 * 127.33965 * 179.67740 * 18 17 16 33 33 H 0.96701 * 117.00178 * 179.97438 * 22 20 19 34 34 H 1.08999 * 110.37744 * 142.93014 * 23 13 12 35 35 H 1.09008 * 110.37208 * 265.26666 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4604 -2.6314 1.1834 11 6 0.3743 -2.6346 -1.2722 12 6 0.2500 -4.1621 -1.4527 13 7 1.3874 -4.7795 -0.7464 14 6 2.1783 -5.6197 -1.6555 15 6 2.9076 -4.7443 -2.6418 16 8 2.4658 -4.3441 -3.8360 17 7 3.2525 -3.6423 -4.4226 18 6 4.3476 -3.4565 -3.7472 19 6 4.1626 -4.2039 -2.4933 20 6 5.0921 -4.3390 -1.3591 21 8 4.7761 -5.0006 -0.3900 22 8 6.2931 -3.7289 -1.3960 23 6 2.2174 -3.7051 -0.1612 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2256 -1.9561 1.2755 26 1 0.8704 -2.1841 -2.1318 27 1 -0.6057 -2.1841 -1.1147 28 1 -0.6880 -4.5114 -1.0212 29 1 0.2900 -4.4148 -2.5122 30 1 2.9007 -6.1981 -1.0796 31 1 1.5153 -6.2979 -2.1926 32 1 5.2097 -2.8772 -4.0434 33 1 6.8689 -3.8463 -0.6280 34 1 2.6064 -4.0121 0.8096 35 1 3.0353 -3.4480 -0.8345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = -60.731787 kcal Electronic energy + Delta-G solvation = -23682.626273 eV Core-core repulsion = 20070.659346 eV Total energy + Delta-G solvation = -3611.966927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.88945 -40.01213 -38.59043 -36.08350 -35.08954 -33.69954 -32.27894 -32.13840 -29.64258 -28.18807 -26.36059 -25.14324 -24.19301 -22.47930 -20.71283 -20.02519 -19.64468 -18.29820 -17.82182 -17.21543 -16.98804 -16.39815 -15.49736 -15.15829 -14.90290 -14.71480 -14.37269 -13.96803 -13.40217 -13.36097 -13.06085 -12.66966 -12.13488 -11.79367 -11.63643 -11.46391 -11.30024 -11.03949 -10.93534 -10.81409 -10.61348 -10.44515 -10.37247 -10.33995 -9.91717 -9.49802 -9.19567 -8.62950 -8.13099 -7.93121 -6.23919 -4.31991 0.94368 1.83057 2.65516 2.95376 3.19210 3.20406 3.26720 3.30244 4.25832 4.32435 4.36804 4.53863 4.65240 5.03410 5.19306 5.39866 5.55385 5.62556 5.78758 5.84443 5.89411 6.01064 6.12253 6.39054 6.45798 6.61280 6.83332 7.02428 7.33480 7.43223 7.47239 7.51128 7.78174 7.89417 8.12408 8.21048 8.69408 9.36532 9.49243 10.83166 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.007743 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.407487 B = 3615.167239 C = 4088.762506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.251 3.749 10 O -0.578 6.578 11 C -0.144 4.144 12 C 0.030 3.970 13 N -0.499 5.499 14 C 0.116 3.884 15 C 0.042 3.958 16 O 0.097 5.903 17 N -0.356 5.356 18 C 0.044 3.956 19 C -0.250 4.250 20 C 0.568 3.432 21 O -0.496 6.496 22 O -0.509 6.509 23 C 0.052 3.948 24 H 0.267 0.733 25 H 0.377 0.623 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.204 0.796 33 H 0.417 0.583 34 H 0.077 0.923 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 -8.381 -5.760 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.075 0.925 9 C 0.211 3.789 10 O -0.386 6.386 11 C -0.183 4.183 12 C -0.097 4.097 13 N -0.221 5.221 14 C -0.014 4.014 15 C -0.024 4.024 16 O 0.040 5.960 17 N -0.062 5.062 18 C -0.139 4.139 19 C -0.257 4.257 20 C 0.411 3.589 21 O -0.385 6.385 22 O -0.321 6.321 23 C -0.074 4.074 24 H 0.077 0.923 25 H 0.226 0.774 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.221 0.779 33 H 0.276 0.724 34 H 0.096 0.904 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.393 -8.855 -6.521 12.720 hybrid contribution 1.342 2.028 0.248 2.444 sum 7.735 -6.827 -6.272 12.074 Atomic orbital electron populations 1.69725 1.05883 1.27433 1.50194 1.24974 0.94988 0.99343 0.93639 0.86508 0.80007 0.82844 0.78186 1.20574 1.20897 1.19720 1.21451 0.93332 0.90656 1.51843 0.92459 1.19645 0.86788 0.90591 0.81881 1.86148 1.51303 1.56672 1.44442 1.23250 1.02897 0.91597 1.00535 1.23060 0.94281 0.96685 0.95648 1.64063 1.07813 1.23063 1.27165 1.21755 0.96953 0.94040 0.88667 1.26414 0.92462 0.96300 0.87272 1.84639 1.38636 1.48292 1.24406 1.73619 1.01964 1.10248 1.20390 1.26380 0.97797 0.99648 0.90117 1.20924 0.96477 1.10679 0.97576 1.19025 0.79646 0.75774 0.84453 1.90958 1.75815 1.38692 1.33029 1.84521 1.28032 1.70117 1.49472 1.23377 0.95120 0.89896 0.99046 0.92327 0.77379 0.92942 0.90119 0.90650 0.93675 0.86125 0.88332 0.77906 0.72440 0.90434 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.92 10.75 55.43 0.60 -23.33 16 2 C 0.07 1.95 5.29 -17.82 -0.09 1.86 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.51 8.28 -34.44 -0.29 -14.80 16 8 H 0.06 1.57 7.79 -52.48 -0.41 1.16 16 9 C 0.25 6.31 0.88 -89.38 -0.08 6.23 16 10 O -0.58 -15.23 13.16 -35.23 -0.46 -15.70 16 11 C -0.14 -3.33 5.36 -24.91 -0.13 -3.46 16 12 C 0.03 0.59 6.47 -2.84 -0.02 0.57 16 13 N -0.50 -9.55 5.41 -232.38 -1.26 -10.80 16 14 C 0.12 1.76 5.43 -4.98 -0.03 1.74 16 15 C 0.04 0.68 5.37 -34.60 -0.19 0.49 16 16 O 0.10 1.57 10.54 18.71 0.20 1.77 16 17 N -0.36 -5.77 12.01 31.81 0.38 -5.39 16 18 C 0.04 0.64 12.41 -14.71 -0.18 0.46 16 19 C -0.25 -3.93 5.15 -102.91 -0.53 -4.46 16 20 C 0.57 8.61 7.32 34.39 0.25 8.86 16 21 O -0.50 -8.47 14.53 -19.28 -0.28 -8.75 16 22 O -0.51 -5.97 13.39 -40.65 -0.54 -6.52 16 23 C 0.05 1.16 4.47 -2.04 -0.01 1.15 16 24 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.38 9.94 7.56 45.56 0.34 10.29 16 26 H 0.05 1.28 8.03 -51.93 -0.42 0.86 16 27 H 0.08 1.97 7.53 -51.93 -0.39 1.58 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.04 0.77 6.78 -51.93 -0.35 0.42 16 30 H 0.12 1.78 6.78 -51.93 -0.35 1.43 16 31 H 0.10 1.20 8.04 -51.93 -0.42 0.79 16 32 H 0.20 2.27 8.06 -52.49 -0.42 1.84 16 33 H 0.42 2.91 9.11 45.56 0.42 3.33 16 34 H 0.08 1.84 8.10 -51.93 -0.42 1.42 16 35 H 0.05 1.16 3.40 -51.92 -0.18 0.98 16 LS Contribution 294.71 15.07 4.44 4.44 Total: -1.00 -30.90 294.71 -5.40 -36.30 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -2.16 Total: 13.48 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.29 Total: -1.37 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: -0.28 Total: -39.52 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.09 Total: -29.19 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.90 -5.40 -36.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.436 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds