Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99373 * 3 2 1 5 5 H 1.48492 * 109.47176 * 29.99592 * 3 2 1 6 6 H 1.48502 * 109.47068 * 150.00076 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00057 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.90351 * 297.58592 * 9 7 2 11 11 C 1.55142 * 110.99048 * 61.45406 * 9 7 2 12 12 C 1.54312 * 103.17714 * 153.83199 * 11 9 7 13 13 N 1.47443 * 107.23612 * 337.62814 * 12 11 9 14 14 C 1.46900 * 111.00227 * 236.74273 * 13 12 11 15 15 C 1.50701 * 109.47223 * 69.87126 * 14 13 12 16 16 O 1.33470 * 126.83730 * 269.69040 * 15 14 13 17 17 N 1.20651 * 113.17748 * 179.77453 * 16 15 14 18 18 C 1.29998 * 112.32078 * 0.50533 * 17 16 15 19 19 C 1.37444 * 126.83606 * 89.99714 * 15 14 13 20 20 C 1.47253 * 128.57342 * 359.97438 * 19 15 14 21 21 O 1.21522 * 120.00174 * 359.97438 * 20 19 15 22 22 O 1.34760 * 119.99680 * 179.97438 * 20 19 15 23 23 C 1.47844 * 108.56494 * 359.01050 * 13 12 11 24 24 H 0.96993 * 120.00152 * 0.02562 * 1 2 3 25 25 H 0.96696 * 113.99925 * 62.41098 * 10 9 7 26 26 H 1.09002 * 110.70816 * 35.36047 * 11 9 7 27 27 H 1.09005 * 110.70106 * 272.30188 * 11 9 7 28 28 H 1.08997 * 109.89327 * 97.03090 * 12 11 9 29 29 H 1.09003 * 109.89220 * 218.21893 * 12 11 9 30 30 H 1.08999 * 109.47147 * 189.87070 * 14 13 12 31 31 H 1.08994 * 109.46907 * 309.87190 * 14 13 12 32 32 H 1.08001 * 127.33965 * 179.67740 * 18 17 16 33 33 H 0.96701 * 117.00178 * 179.97438 * 22 20 19 34 34 H 1.08999 * 110.37744 * 142.93014 * 23 13 12 35 35 H 1.09008 * 110.37208 * 265.26666 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4604 -2.6314 1.1834 11 6 0.3743 -2.6346 -1.2722 12 6 0.2500 -4.1621 -1.4527 13 7 1.3874 -4.7795 -0.7464 14 6 2.1783 -5.6197 -1.6555 15 6 2.9076 -4.7443 -2.6418 16 8 2.4658 -4.3441 -3.8360 17 7 3.2525 -3.6423 -4.4226 18 6 4.3476 -3.4565 -3.7472 19 6 4.1626 -4.2039 -2.4933 20 6 5.0921 -4.3390 -1.3591 21 8 4.7761 -5.0006 -0.3900 22 8 6.2931 -3.7289 -1.3960 23 6 2.2174 -3.7051 -0.1612 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2256 -1.9561 1.2755 26 1 0.8704 -2.1841 -2.1318 27 1 -0.6057 -2.1841 -1.1147 28 1 -0.6880 -4.5114 -1.0212 29 1 0.2900 -4.4148 -2.5122 30 1 2.9007 -6.1981 -1.0796 31 1 1.5153 -6.2979 -2.1926 32 1 5.2097 -2.8772 -4.0434 33 1 6.8689 -3.8463 -0.6280 34 1 2.6064 -4.0121 0.8096 35 1 3.0353 -3.4480 -0.8345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = -86.177281 kcal Electronic energy + Delta-G solvation = -23683.729672 eV Core-core repulsion = 20070.659346 eV Total energy + Delta-G solvation = -3613.070326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.08751 -41.19044 -40.20103 -37.27523 -36.77651 -34.90145 -34.22888 -33.67388 -31.23596 -29.94951 -27.90925 -26.52577 -25.82843 -23.69393 -22.14085 -21.59070 -21.28686 -19.44463 -19.29159 -18.76723 -18.37120 -17.65270 -16.98827 -16.79657 -16.65849 -16.25173 -15.77554 -15.47794 -14.83677 -14.78109 -14.44766 -14.25123 -13.83401 -13.39868 -13.27013 -13.13487 -12.81471 -12.66669 -12.59360 -12.34788 -12.26359 -12.20666 -11.83359 -11.71621 -11.54384 -11.15234 -10.74922 -10.62529 -10.13043 -9.48758 -8.26285 -6.41923 -0.26792 0.66758 1.34508 1.37149 1.46338 1.51180 1.78083 2.09799 2.33168 2.95807 3.02914 3.19713 3.28091 3.48087 3.86550 3.93553 4.10521 4.13779 4.39112 4.39439 4.54627 4.67022 4.71908 4.76231 4.83468 5.03366 5.20002 5.41720 5.48588 5.50185 5.72909 5.80756 6.01796 6.14890 6.61871 6.88753 7.02127 7.29431 7.42113 8.79077 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.007743 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.407487 B = 3615.167239 C = 4088.762506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.034 3.966 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.560 4.560 8 H 0.046 0.954 9 C 0.233 3.767 10 O -0.587 6.587 11 C -0.133 4.133 12 C 0.040 3.960 13 N -0.504 5.504 14 C 0.116 3.884 15 C 0.036 3.964 16 O 0.090 5.910 17 N -0.374 5.374 18 C 0.052 3.948 19 C -0.264 4.264 20 C 0.569 3.431 21 O -0.521 6.521 22 O -0.499 6.499 23 C 0.066 3.934 24 H 0.269 0.731 25 H 0.372 0.628 26 H 0.033 0.967 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.235 0.765 33 H 0.437 0.563 34 H 0.056 0.944 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.050 -8.597 -6.606 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.168 4.168 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.598 4.598 8 H 0.064 0.936 9 C 0.193 3.807 10 O -0.394 6.394 11 C -0.172 4.172 12 C -0.087 4.087 13 N -0.226 5.226 14 C -0.013 4.013 15 C -0.031 4.031 16 O 0.035 5.965 17 N -0.082 5.082 18 C -0.131 4.131 19 C -0.271 4.271 20 C 0.413 3.587 21 O -0.412 6.412 22 O -0.313 6.313 23 C -0.061 4.061 24 H 0.079 0.921 25 H 0.221 0.779 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.251 0.749 33 H 0.300 0.700 34 H 0.074 0.926 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.268 -9.085 -7.366 13.771 hybrid contribution 1.147 2.105 0.507 2.450 sum 8.415 -6.980 -6.860 12.907 Atomic orbital electron populations 1.69804 1.06688 1.28169 1.49936 1.25639 0.95842 1.02064 0.93211 0.85627 0.78878 0.79335 0.78265 1.20101 1.20235 1.19634 1.21675 0.93046 0.92224 1.52839 0.93566 1.19898 0.87485 0.91263 0.82062 1.86142 1.51327 1.56457 1.45470 1.23003 1.01024 0.94378 0.98771 1.22986 0.94757 0.93652 0.97296 1.63934 1.07930 1.21993 1.28775 1.21880 0.97529 0.93510 0.88375 1.26473 0.92812 0.96376 0.87430 1.84612 1.38846 1.48514 1.24516 1.73609 1.02629 1.10936 1.21032 1.26908 0.98084 0.98834 0.89239 1.21214 0.96831 1.10811 0.98242 1.19018 0.80297 0.75479 0.83894 1.90949 1.76519 1.39910 1.33827 1.84473 1.27046 1.69086 1.50719 1.23101 0.94864 0.89651 0.98459 0.92114 0.77923 0.94822 0.92031 0.89845 0.91167 0.85566 0.84707 0.74896 0.70008 0.92574 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.82 10.75 21.45 0.23 -48.59 16 2 C 0.03 1.80 5.29 84.65 0.45 2.25 16 3 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 4 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.56 -30.68 8.28 25.60 0.21 -30.47 16 8 H 0.05 2.56 7.79 -2.91 -0.02 2.54 16 9 C 0.23 11.80 0.88 -9.99 -0.01 11.80 16 10 O -0.59 -31.42 13.16 -148.98 -1.96 -33.38 16 11 C -0.13 -6.16 5.36 31.77 0.17 -5.99 16 12 C 0.04 1.49 6.47 86.64 0.56 2.05 16 13 N -0.50 -18.65 5.41 -889.11 -4.81 -23.46 16 14 C 0.12 3.30 5.43 85.56 0.46 3.76 16 15 C 0.04 1.08 5.37 25.50 0.14 1.22 16 16 O 0.09 2.77 10.54 77.20 0.81 3.59 16 17 N -0.37 -11.54 12.01 -54.16 -0.65 -12.19 16 18 C 0.05 1.43 12.41 87.30 1.08 2.51 16 19 C -0.26 -7.91 5.15 -18.75 -0.10 -8.00 16 20 C 0.57 16.46 7.32 70.19 0.51 16.98 16 21 O -0.52 -17.33 14.53 19.76 0.29 -17.05 16 22 O -0.50 -10.65 13.39 -56.71 -0.76 -11.41 16 23 C 0.07 2.95 4.47 86.94 0.39 3.33 16 24 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 25 H 0.37 20.09 7.56 -74.06 -0.56 19.53 16 26 H 0.03 1.64 8.03 -2.39 -0.02 1.63 16 27 H 0.06 3.05 7.53 -2.38 -0.02 3.03 16 28 H 0.08 2.97 8.14 -2.39 -0.02 2.96 16 29 H 0.07 2.25 6.78 -2.39 -0.02 2.23 16 30 H 0.13 3.50 6.78 -2.39 -0.02 3.48 16 31 H 0.14 2.84 8.04 -2.39 -0.02 2.82 16 32 H 0.23 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.44 5.16 9.11 -74.06 -0.67 4.48 16 34 H 0.06 2.70 8.10 -2.39 -0.02 2.68 16 35 H 0.06 2.49 3.40 -2.38 -0.01 2.48 16 Total: -1.00 -65.95 294.71 -1.02 -66.97 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: -0.07 Total: 31.50 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 3.87 Total: -0.56 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -5.23 Total: -84.24 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -1.62 Total: -58.24 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -65.95 -1.02 -66.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.207 kcal (2) G-P(sol) polarization free energy of solvation -65.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds