Wall clock time and date at job start Tue Mar 31 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00143 * 2 1 4 4 H 1.48504 * 109.46717 * 269.99875 * 3 2 1 5 5 H 1.48500 * 109.47044 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.46886 * 150.00241 * 3 2 1 7 7 C 1.37884 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46545 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46526 * 180.02562 * 10 9 7 12 12 O 1.45201 * 109.46839 * 180.02562 * 11 10 9 13 13 C 1.34233 * 117.00045 * 179.97438 * 12 11 10 14 14 O 1.20832 * 119.99822 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00189 * 180.02562 * 13 12 11 16 16 N 1.46500 * 109.46978 * 180.02562 * 15 13 12 17 17 C 1.35048 * 124.87645 * 124.99924 * 16 15 13 18 18 C 1.35349 * 107.24050 * 179.70887 * 17 16 15 19 19 C 1.41554 * 105.50059 * 0.26661 * 18 17 16 20 20 C 1.47579 * 126.52545 * 179.97438 * 19 18 17 21 21 O 1.21497 * 119.99741 * 359.97438 * 20 19 18 22 22 O 1.34728 * 120.00460 * 179.97438 * 20 19 18 23 23 N 1.28463 * 124.87921 * 305.18608 * 16 15 13 24 24 H 0.96999 * 119.99390 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47247 * 60.00271 * 9 7 2 26 26 H 1.08994 * 109.46950 * 299.99732 * 9 7 2 27 27 H 1.08996 * 109.47290 * 60.00638 * 10 9 7 28 28 H 1.08994 * 109.47452 * 299.99638 * 10 9 7 29 29 H 1.08998 * 109.47629 * 59.99915 * 11 10 9 30 30 H 1.09004 * 109.47318 * 299.99907 * 11 10 9 31 31 H 1.09001 * 109.47200 * 59.99822 * 15 13 12 32 32 H 1.08999 * 109.46879 * 300.00151 * 15 13 12 33 33 H 1.08002 * 126.38468 * 359.97438 * 17 16 15 34 34 H 1.07999 * 127.25525 * 180.28125 * 18 17 16 35 35 H 0.96692 * 117.00460 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 8 2.4238 -6.0907 0.0005 13 6 1.9107 -7.3311 0.0006 14 8 0.7128 -7.4894 -0.0003 15 6 2.8287 -8.5263 0.0018 16 7 2.0307 -9.7549 0.0010 17 6 2.1441 -10.7487 -0.9063 18 6 1.2484 -11.7052 -0.5675 19 6 0.5937 -11.2179 0.5890 20 6 -0.4753 -11.8982 1.3456 21 8 -0.8744 -12.9881 0.9865 22 8 -1.0086 -11.3107 2.4345 23 7 1.1203 -10.0401 0.8613 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.8539 -5.0446 -0.8903 30 1 0.8533 -5.0451 0.8897 31 1 3.4568 -8.5011 0.8922 32 1 3.4582 -8.5017 -0.8877 33 1 2.8257 -10.7772 -1.7435 34 1 1.0707 -12.6430 -1.0729 35 1 -1.7063 -11.7946 2.8971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:26 Heat of formation + Delta-G solvation = -99.892964 kcal Electronic energy + Delta-G solvation = -20677.440013 eV Core-core repulsion = 17063.774930 eV Total energy + Delta-G solvation = -3613.665083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.12485 -40.41726 -40.00476 -36.75016 -36.28561 -34.16718 -33.96190 -31.79490 -31.17171 -29.21614 -27.07160 -24.92055 -23.37986 -22.05857 -21.36842 -20.66172 -20.36943 -18.23908 -18.06122 -17.89228 -16.95062 -16.85087 -16.39622 -16.23521 -15.71112 -15.07815 -14.52076 -14.50239 -14.04408 -13.82437 -13.47234 -13.20708 -13.02815 -12.26023 -12.16291 -11.97267 -11.79135 -11.22879 -11.10292 -11.02764 -10.83197 -10.74180 -10.58992 -10.52810 -9.82433 -9.73060 -9.58110 -9.48604 -9.22254 -8.43604 -6.08175 -4.11717 1.03725 1.56626 1.79357 1.99961 2.58076 2.84680 2.95538 3.27655 3.34139 3.37197 3.96179 4.32061 4.37930 4.50999 4.52042 4.58497 5.06519 5.24648 5.27834 5.36514 5.45596 5.48348 5.88777 5.94593 6.16865 6.23176 6.29758 6.43778 6.69301 6.88580 7.39467 7.53902 7.62216 7.64150 7.74788 7.89515 8.29773 8.94490 9.52919 11.03234 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.037281 B = 0.002477 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.876450 B =11299.036488 C =11830.905862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.070 3.930 12 O -0.354 6.354 13 C 0.442 3.558 14 O -0.481 6.481 15 C 0.129 3.871 16 N -0.273 5.273 17 C -0.012 4.012 18 C -0.170 4.170 19 C -0.012 4.012 20 C 0.579 3.421 21 O -0.512 6.512 22 O -0.499 6.499 23 N -0.204 5.204 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.191 0.809 34 H 0.169 0.831 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 -23.380 -0.360 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.002 4.002 12 O -0.270 6.270 13 C 0.281 3.719 14 O -0.366 6.366 15 C 0.007 3.993 16 N -0.064 5.064 17 C -0.152 4.152 18 C -0.198 4.198 19 C -0.170 4.170 20 C 0.421 3.579 21 O -0.398 6.398 22 O -0.309 6.309 23 N -0.041 5.041 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.208 0.792 34 H 0.186 0.814 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 5.986 -22.354 0.091 23.142 hybrid contribution -0.167 0.108 -0.335 0.390 sum 5.819 -22.246 -0.245 22.995 Atomic orbital electron populations 1.69966 1.06111 1.26848 1.50360 1.25040 0.94887 0.99417 0.95134 0.86535 0.79797 0.83178 0.78151 1.20593 1.21158 1.19795 1.21152 0.93107 0.90618 1.51235 0.92396 1.19058 0.93828 0.90698 0.97759 1.21788 0.99992 0.90743 1.02076 1.23619 0.91088 0.83029 1.02494 1.86458 1.42859 1.14517 1.83152 1.23097 0.88608 0.85446 0.74711 1.90792 1.16175 1.86462 1.43195 1.21390 0.91042 0.77759 1.09096 1.45104 1.26574 1.15138 1.19563 1.22961 1.04538 0.89490 0.98235 1.21742 0.98338 1.02059 0.97617 1.20715 1.02156 0.94251 0.99890 1.19217 0.79062 0.81940 0.77696 1.90912 1.60302 1.20623 1.67977 1.84679 1.53542 1.52565 1.40092 1.73822 1.01137 1.14443 1.14672 0.92826 0.96230 0.96156 0.91981 0.92048 0.91303 0.91164 0.84260 0.83304 0.79214 0.81378 0.72679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.12 5.53 -26.73 -0.15 -2.27 16 11 C 0.07 1.21 5.47 37.16 0.20 1.42 16 12 O -0.35 -5.09 10.22 -39.27 -0.40 -5.49 16 13 C 0.44 5.79 7.96 36.00 0.29 6.07 16 14 O -0.48 -8.34 15.38 -18.75 -0.29 -8.62 16 15 C 0.13 0.96 6.99 -5.19 -0.04 0.92 16 16 N -0.27 -2.74 3.17 -62.51 -0.20 -2.94 16 17 C -0.01 -0.09 11.40 -17.17 -0.20 -0.29 16 18 C -0.17 -1.62 10.81 -39.35 -0.43 -2.04 16 19 C -0.01 -0.15 7.17 -82.78 -0.59 -0.74 16 20 C 0.58 7.13 8.34 34.54 0.29 7.41 16 21 O -0.51 -6.97 17.71 -19.26 -0.34 -7.31 16 22 O -0.50 -5.18 13.44 -40.57 -0.55 -5.73 16 23 N -0.20 -2.74 10.89 33.41 0.36 -2.38 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 30 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 31 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.15 0.44 8.04 -51.93 -0.42 0.02 16 33 H 0.19 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.41 2.02 9.11 45.56 0.42 2.44 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -37.38 324.46 -5.32 -42.70 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -3.35 Total: -3.23 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.17 Total: -2.29 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.90 Total: -31.11 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -1.58 Total: -27.16 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.38 -5.32 -42.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.193 kcal (2) G-P(sol) polarization free energy of solvation -37.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds