Wall clock time and date at job start Tue Mar 31 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20827 * 119.99770 * 2 1 4 4 C 1.47759 * 119.99857 * 179.97438 * 2 1 3 5 5 C 1.42439 * 126.96454 * 179.97438 * 4 2 1 6 6 C 1.35271 * 103.91736 * 180.27582 * 5 4 2 7 7 C 1.50697 * 126.64661 * 179.76448 * 6 5 4 8 8 N 1.46496 * 109.47502 * 89.99420 * 7 6 5 9 9 C 1.36932 * 120.00174 * 270.00510 * 8 7 6 10 10 H 1.08007 * 120.00311 * 142.06456 * 9 8 7 11 11 C 1.38808 * 120.00208 * 322.06003 * 9 8 7 12 12 N 1.31624 * 120.00463 * 157.01307 * 11 9 8 13 13 Si 1.86806 * 120.00027 * 337.01768 * 11 9 8 14 14 H 1.48496 * 109.47324 * 95.69430 * 13 11 9 15 15 H 1.48499 * 109.47043 * 215.69583 * 13 11 9 16 16 H 1.48503 * 109.46873 * 335.69334 * 13 11 9 17 17 C 1.46502 * 119.99939 * 90.00254 * 8 7 6 18 18 C 1.52999 * 109.47010 * 89.54275 * 17 8 7 19 19 C 1.50702 * 109.47212 * 180.02562 * 18 17 8 20 20 O 1.20827 * 119.99734 * 359.97438 * 19 18 17 21 21 O 1.34228 * 120.00369 * 179.97438 * 19 18 17 22 22 O 1.34028 * 106.71432 * 359.62840 * 6 5 4 23 23 N 1.20900 * 111.89440 * 0.40607 * 22 6 5 24 24 H 1.09003 * 109.47042 * 270.00245 * 1 2 3 25 25 H 1.08993 * 109.47481 * 29.99966 * 1 2 3 26 26 H 1.08999 * 109.47294 * 150.00378 * 1 2 3 27 27 H 1.08007 * 128.04572 * 0.02562 * 5 4 2 28 28 H 1.09000 * 109.47428 * 209.99812 * 7 6 5 29 29 H 1.09003 * 109.46555 * 329.99531 * 7 6 5 30 30 H 0.96994 * 120.00604 * 180.02562 * 12 11 9 31 31 H 1.09000 * 109.47264 * 209.54763 * 17 8 7 32 32 H 1.09004 * 109.46991 * 329.54505 * 17 8 7 33 33 H 1.09001 * 109.47112 * 299.99675 * 18 17 8 34 34 H 1.08997 * 109.47313 * 60.00555 * 18 17 8 35 35 H 0.96696 * 117.00186 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 6 2.2458 -1.2796 0.0006 5 6 3.6597 -1.4524 0.0001 6 6 3.8234 -2.7952 -0.0053 7 6 5.1324 -3.5417 -0.0131 8 7 5.5621 -3.7885 1.3655 9 6 6.3503 -2.8737 2.0112 10 1 6.1957 -2.6731 3.0611 11 6 7.3482 -2.2041 1.3164 12 7 7.7944 -1.0470 1.7574 13 14 8.0577 -2.9451 -0.2448 14 1 7.3627 -2.3717 -1.4251 15 1 9.5077 -2.6350 -0.3252 16 1 7.8667 -4.4176 -0.2249 17 6 5.1485 -5.0140 2.0534 18 6 6.1782 -6.1159 1.7955 19 6 5.7525 -7.3768 2.5026 20 8 4.7305 -7.3923 3.1470 21 8 6.5085 -8.4826 2.4165 22 8 2.5958 -3.3332 0.0005 23 7 1.7326 -2.4867 0.0008 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 4.4235 -0.6888 -0.0003 28 1 5.0052 -4.4929 -0.5299 29 1 5.8869 -2.9466 -0.5278 30 1 8.4915 -0.5789 1.2717 31 1 5.0800 -4.8241 3.1245 32 1 4.1755 -5.3309 1.6777 33 1 6.2465 -6.3059 0.7244 34 1 7.1511 -5.7992 2.1712 35 1 6.1947 -9.2667 2.8873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603102948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:20 Heat of formation + Delta-G solvation = -43.300213 kcal Electronic energy + Delta-G solvation = -22024.559680 eV Core-core repulsion = 18413.348643 eV Total energy + Delta-G solvation = -3611.211037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.51468 -39.98261 -39.18529 -36.78992 -35.87057 -33.60785 -32.39418 -32.24836 -30.30835 -29.78890 -26.46168 -25.19392 -24.09410 -22.36146 -21.85146 -20.12620 -19.02193 -17.91338 -17.67066 -17.30442 -16.43814 -16.19840 -15.86058 -15.67669 -15.42586 -14.84570 -14.78458 -14.13926 -13.73238 -13.43598 -13.18302 -12.86492 -12.57516 -12.45687 -12.28636 -12.25429 -11.78835 -11.43891 -11.34437 -11.18096 -10.85455 -10.43371 -10.30792 -10.30042 -10.05072 -9.97494 -9.88078 -8.91693 -8.80775 -7.31216 -6.25351 -3.72396 1.14289 2.10165 2.46132 3.07957 3.09575 3.25221 3.27776 3.31689 3.47624 3.85363 4.25241 4.54512 4.76278 5.02570 5.10135 5.31647 5.34910 5.41007 5.50364 5.52240 5.59999 5.71318 5.87064 6.00480 6.03002 6.12068 6.14589 6.35660 6.50687 6.58767 6.73807 7.41609 7.71573 8.07691 8.15028 8.46131 8.64276 9.39002 9.73447 10.88420 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.005861 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.461915 B = 4776.410714 C = 6160.985067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.440 3.560 3 O -0.441 6.441 4 C -0.071 4.071 5 C -0.178 4.178 6 C -0.026 4.026 7 C 0.203 3.797 8 N -0.582 5.582 9 C -0.285 4.285 10 H 0.085 0.915 11 C 0.046 3.954 12 N -0.880 5.880 13 Si 0.862 3.138 14 H -0.280 1.280 15 H -0.293 1.293 16 H -0.260 1.260 17 C 0.159 3.841 18 C -0.136 4.136 19 C 0.481 3.519 20 O -0.522 6.522 21 O -0.524 6.524 22 O 0.114 5.886 23 N -0.337 5.337 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.176 0.824 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.268 0.732 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 -7.559 -4.484 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.315 3.685 3 O -0.311 6.311 4 C -0.227 4.227 5 C -0.202 4.202 6 C -0.092 4.092 7 C 0.075 3.925 8 N -0.302 5.302 9 C -0.414 4.414 10 H 0.103 0.897 11 C -0.157 4.157 12 N -0.518 5.518 13 Si 0.690 3.310 14 H -0.208 1.208 15 H -0.220 1.220 16 H -0.184 1.184 17 C 0.033 3.967 18 C -0.177 4.177 19 C 0.324 3.676 20 O -0.410 6.410 21 O -0.335 6.335 22 O 0.039 5.961 23 N -0.041 5.041 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.193 0.807 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.082 -6.865 -4.488 11.515 hybrid contribution 1.054 -0.353 -0.445 1.197 sum -7.029 -7.218 -4.933 11.217 Atomic orbital electron populations 1.22158 0.92649 1.04954 1.05016 1.21454 0.91210 0.85060 0.70815 1.90462 1.72240 1.32942 1.35436 1.24068 0.94175 0.94751 1.09671 1.22579 0.94697 0.96696 1.06227 1.26383 0.88228 0.94281 1.00308 1.20210 0.85716 0.97573 0.89017 1.44208 1.56096 1.18237 1.11676 1.18813 1.09714 1.16165 0.96659 0.89742 1.25506 0.96536 0.95807 0.97895 1.69871 1.29114 1.12075 1.40720 0.87163 0.78928 0.81206 0.83716 1.20785 1.22038 1.18447 1.20857 0.93700 0.83739 0.98398 1.22291 1.05077 0.89150 1.01135 1.24036 0.80747 0.84771 0.78078 1.90692 1.25573 1.84646 1.40131 1.84616 1.54845 1.22883 1.71158 1.84716 1.12947 1.32634 1.65801 1.74082 1.14959 0.98652 1.16363 0.88266 0.89247 0.89257 0.80698 0.91056 0.89051 0.92134 0.91318 0.92551 0.88505 0.87070 0.74078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 10.17 36.01 0.37 -1.77 16 2 C 0.44 7.08 7.27 -30.42 -0.22 6.86 16 3 O -0.44 -8.31 17.67 5.94 0.11 -8.20 16 4 C -0.07 -1.28 7.11 -82.65 -0.59 -1.87 16 5 C -0.18 -3.52 10.92 -39.02 -0.43 -3.95 16 6 C -0.03 -0.49 7.05 -35.37 -0.25 -0.74 16 7 C 0.20 3.81 5.07 -5.20 -0.03 3.78 16 8 N -0.58 -12.03 2.05 -174.61 -0.36 -12.39 16 9 C -0.29 -7.08 9.90 -15.06 -0.15 -7.22 16 10 H 0.09 2.34 8.06 -52.48 -0.42 1.91 16 11 C 0.05 1.17 5.29 -17.43 -0.09 1.08 16 12 N -0.88 -24.54 13.97 55.49 0.78 -23.77 16 13 Si 0.86 18.95 25.10 -169.99 -4.27 14.69 16 14 H -0.28 -5.97 6.68 56.52 0.38 -5.60 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 17 C 0.16 2.86 4.96 -4.04 -0.02 2.84 16 18 C -0.14 -2.11 6.14 -27.88 -0.17 -2.29 16 19 C 0.48 7.05 8.33 36.01 0.30 7.35 16 20 O -0.52 -9.02 16.74 -18.75 -0.31 -9.33 16 21 O -0.52 -6.13 13.42 -39.25 -0.53 -6.66 16 22 O 0.11 2.04 11.17 17.21 0.19 2.23 16 23 N -0.34 -5.93 11.86 33.25 0.39 -5.53 16 24 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.09 0.93 7.97 -51.93 -0.41 0.51 16 27 H 0.18 3.65 8.06 -52.48 -0.42 3.23 16 28 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 29 H 0.09 1.84 3.38 -51.93 -0.18 1.67 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.07 1.32 7.99 -51.93 -0.42 0.90 16 32 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.11 1.81 8.14 -51.93 -0.42 1.38 16 35 H 0.40 2.85 9.10 45.56 0.41 3.26 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -30.50 316.61 -3.63 -34.13 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.12 Total: 6.00 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.28 Total: 4.07 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.81 Total: -41.69 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.54 Total: -21.96 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.27 Total: 14.69 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.50 -3.63 -34.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603102948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.173 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds