Wall clock time and date at job start Tue Mar 31 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47197 * 2 1 4 4 C 1.50696 * 109.46999 * 240.00423 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99947 * 4 2 1 6 6 C 1.37876 * 120.00339 * 59.99801 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47057 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47034 * 119.99952 * 8 6 4 11 11 H 1.48500 * 109.47389 * 239.99944 * 8 6 4 12 12 C 1.52993 * 109.47392 * 119.99957 * 2 1 3 13 13 N 1.46496 * 109.47551 * 300.00334 * 12 2 1 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 2 15 15 O 1.21579 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.47506 * 120.00014 * 179.97438 * 14 13 12 17 17 C 1.36689 * 126.83142 * 179.97438 * 16 14 13 18 18 C 1.42163 * 103.78932 * 179.97438 * 17 16 14 19 19 C 1.48236 * 126.84581 * 180.02562 * 18 17 16 20 20 O 1.21414 * 119.99756 * 0.02562 * 19 18 17 21 21 O 1.34640 * 120.00244 * 180.02562 * 19 18 17 22 22 N 1.30989 * 106.31190 * 0.02562 * 18 17 16 23 23 O 1.20868 * 111.80289 * 359.69744 * 22 18 17 24 24 H 1.09002 * 109.47097 * 299.99802 * 1 2 3 25 25 H 1.09001 * 109.47142 * 59.99766 * 1 2 3 26 26 H 1.08996 * 109.46698 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47061 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47061 * 300.00893 * 3 2 1 29 29 H 1.09002 * 109.46935 * 60.00099 * 3 2 1 30 30 H 0.97005 * 120.00032 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47250 * 180.02562 * 12 2 1 32 32 H 1.09004 * 109.46862 * 60.00135 * 12 2 1 33 33 H 0.96999 * 119.99694 * 359.97438 * 13 12 2 34 34 H 1.07997 * 128.10206 * 0.04322 * 17 16 14 35 35 H 0.96703 * 117.00315 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 3.1484 -2.2854 -3.6039 10 1 1.1677 -1.5864 -4.8166 11 1 3.1471 -0.1855 -4.8162 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8779 -0.4909 3.6695 15 8 2.5769 -1.4794 3.7809 16 6 1.3866 0.2047 4.8739 17 6 1.6294 -0.1384 6.1745 18 6 0.9320 0.8499 6.9215 19 6 0.8561 0.9592 8.3979 20 8 1.4296 0.1488 9.0968 21 8 0.1511 1.9570 8.9638 22 7 0.3698 1.6447 6.0452 23 8 0.6146 1.3070 4.9107 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7080 1.1610 -3.4844 31 1 3.1301 -0.7208 1.2494 32 1 1.6767 -1.7489 1.2491 33 1 0.9944 0.7581 2.3564 34 1 2.2149 -0.9658 6.5474 35 1 0.1311 1.9873 9.9301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603575866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:10 Heat of formation + Delta-G solvation = -64.304366 kcal Electronic energy + Delta-G solvation = -21585.341756 eV Core-core repulsion = 17973.219911 eV Total energy + Delta-G solvation = -3612.121845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.52020 -40.51493 -39.53269 -36.68236 -36.56870 -34.57051 -33.54507 -32.40885 -30.87511 -26.23110 -26.16754 -25.79247 -25.28806 -23.57342 -22.67650 -20.73684 -19.20820 -18.66672 -18.41890 -18.30270 -16.96376 -16.19553 -16.03996 -15.75202 -15.47395 -14.96082 -14.72183 -14.20511 -13.85903 -13.58040 -13.01313 -12.99581 -12.30498 -12.24250 -12.16792 -11.48800 -11.45574 -11.27596 -11.05742 -10.94597 -10.72328 -10.47277 -10.36453 -10.16272 -10.12067 -9.72517 -9.43894 -8.86075 -8.72211 -8.42734 -6.07727 -4.18342 0.36455 0.79710 2.09339 2.34825 2.37385 3.01552 3.24292 3.28961 3.33625 3.38292 3.61280 4.32896 4.35999 4.64938 4.76758 5.02235 5.19524 5.41950 5.83691 6.04522 6.17165 6.39419 6.51016 6.76055 6.76132 6.84338 6.93383 7.19052 7.26865 7.43201 7.48602 7.63249 7.72683 7.94513 8.04224 8.17812 8.33068 8.82269 9.48157 10.93732 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.047800 B = 0.003183 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.627459 B = 8794.132498 C = 9188.690415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.128 3.872 13 N -0.693 5.693 14 C 0.592 3.408 15 O -0.516 6.516 16 C -0.064 4.064 17 C -0.108 4.108 18 C -0.027 4.027 19 C 0.576 3.424 20 O -0.490 6.490 21 O -0.497 6.497 22 N -0.289 5.289 23 O 0.154 5.846 24 H 0.008 0.992 25 H 0.087 0.913 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.087 0.913 29 H 0.008 0.992 30 H 0.260 0.740 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.407 0.593 34 H 0.197 0.803 35 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 2.790 16.500 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.055 3.945 3 C -0.192 4.192 4 C -0.546 4.546 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.006 3.994 13 N -0.343 5.343 14 C 0.373 3.627 15 O -0.393 6.393 16 C -0.130 4.130 17 C -0.131 4.131 18 C -0.182 4.182 19 C 0.416 3.584 20 O -0.375 6.375 21 O -0.309 6.309 22 N 0.017 4.983 23 O 0.066 5.934 24 H 0.027 0.973 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.106 0.894 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.243 0.757 34 H 0.214 0.786 35 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -2.134 3.033 16.402 16.816 hybrid contribution 0.433 -0.611 -0.047 0.750 sum -1.702 2.422 16.354 16.620 Atomic orbital electron populations 1.21864 0.97569 0.99366 1.00357 1.18388 0.92969 0.92860 0.90290 1.21863 0.98720 0.98217 1.00355 1.20986 1.31676 1.12217 0.89741 0.92246 1.24876 0.94790 0.94892 0.98905 1.69808 1.36496 1.22705 1.23256 0.86508 0.78656 0.79741 0.82932 1.19729 1.21045 1.21051 1.21971 0.98707 0.96101 0.82576 1.46331 1.51054 1.31498 1.05407 1.16507 0.81328 0.83711 0.81155 1.90881 1.38045 1.25038 1.85309 1.24682 0.99474 0.90963 0.97851 1.22774 1.00359 1.00403 0.89544 1.22170 1.04902 0.97999 0.93135 1.19015 0.75330 0.78254 0.85753 1.90957 1.43071 1.40984 1.62531 1.84593 1.67195 1.49245 1.29819 1.74257 1.15143 1.19125 0.89731 1.85021 1.50157 1.35276 1.22906 0.97336 0.89418 0.95264 0.95262 0.89424 0.97336 0.92966 0.91785 0.91780 0.75690 0.78593 0.71836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.20 0.50 -155.66 -0.08 1.12 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -12.61 8.01 -34.44 -0.28 -12.89 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -22.74 9.35 55.43 0.52 -22.23 16 8 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 C 0.13 2.45 4.50 -4.05 -0.02 2.43 16 13 N -0.69 -11.08 4.96 -61.37 -0.30 -11.38 16 14 C 0.59 9.17 7.82 -12.48 -0.10 9.08 16 15 O -0.52 -9.44 16.91 5.30 0.09 -9.35 16 16 C -0.06 -0.83 7.28 -36.37 -0.26 -1.10 16 17 C -0.11 -1.28 10.77 -38.64 -0.42 -1.70 16 18 C -0.03 -0.32 7.22 -82.61 -0.60 -0.92 16 19 C 0.58 6.15 8.36 34.84 0.29 6.44 16 20 O -0.49 -6.09 17.73 -19.20 -0.34 -6.43 16 21 O -0.50 -3.91 13.44 -40.33 -0.54 -4.46 16 22 N -0.29 -3.65 12.09 33.35 0.40 -3.25 16 23 O 0.15 1.92 11.01 15.60 0.17 2.09 16 24 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 25 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 29 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 30 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.41 5.93 5.98 -40.82 -0.24 5.68 16 34 H 0.20 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.42 1.01 9.11 45.56 0.42 1.42 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -28.75 309.76 -4.13 -32.88 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.83 Total: 3.43 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.95 Total: -1.00 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.62 Total: -36.85 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.62 Total: -18.16 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.75 -4.13 -32.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603575866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.421 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds