Wall clock time and date at job start Tue Mar 31 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47124 * 2 1 4 4 H 1.09002 * 109.46902 * 305.58683 * 3 2 1 5 5 C 1.50699 * 109.47369 * 185.58994 * 3 2 1 6 6 H 1.07996 * 119.99580 * 274.99068 * 5 3 2 7 7 C 1.37876 * 119.99935 * 94.99297 * 5 3 2 8 8 N 1.31516 * 119.99846 * 184.84427 * 7 5 3 9 9 Si 1.86800 * 120.00276 * 4.83870 * 7 5 3 10 10 H 1.48503 * 109.46623 * 84.86874 * 9 7 5 11 11 H 1.48496 * 109.47160 * 204.87034 * 9 7 5 12 12 H 1.48496 * 109.46939 * 324.86731 * 9 7 5 13 13 O 1.45203 * 109.47261 * 65.58592 * 3 2 1 14 14 C 1.34228 * 117.00154 * 270.00597 * 13 3 2 15 15 O 1.20832 * 119.99786 * 359.97438 * 14 13 3 16 16 C 1.50692 * 120.00315 * 180.02562 * 14 13 3 17 17 N 1.46495 * 109.47588 * 179.97438 * 16 14 13 18 18 C 1.35048 * 124.88389 * 124.72068 * 17 16 14 19 19 C 1.35347 * 107.24054 * 179.89344 * 18 17 16 20 20 C 1.41543 * 105.50484 * 0.35384 * 19 18 17 21 21 C 1.47577 * 126.52377 * 179.75899 * 20 19 18 22 22 O 1.21495 * 120.00424 * 359.97438 * 21 20 19 23 23 O 1.34735 * 120.00027 * 179.97438 * 21 20 19 24 24 N 1.28473 * 124.87460 * 305.01979 * 17 16 14 25 25 H 1.09001 * 109.47199 * 300.00186 * 1 2 3 26 26 H 1.08999 * 109.47394 * 60.00096 * 1 2 3 27 27 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47199 * 239.99814 * 2 1 3 29 29 H 1.08999 * 109.47394 * 119.99904 * 2 1 3 30 30 H 0.96998 * 120.00020 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47245 * 299.99970 * 16 14 13 32 32 H 1.09002 * 109.47387 * 59.99296 * 16 14 13 33 33 H 1.07995 * 126.37690 * 0.03617 * 18 17 16 34 34 H 1.07998 * 127.24456 * 180.08632 * 19 18 17 35 35 H 0.96701 * 117.00147 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5973 1.9844 -0.8358 5 6 3.5406 1.4449 -0.1384 6 1 4.1637 1.3341 0.7367 7 6 4.1180 1.5884 -1.3822 8 7 5.4230 1.4952 -1.5161 9 14 3.0467 1.9152 -2.8772 10 1 2.7808 3.3721 -2.9866 11 1 3.7470 1.4466 -4.0999 12 1 1.7608 1.1866 -2.7334 13 8 1.6679 2.0875 1.2466 14 6 0.4849 2.7211 1.2755 15 8 -0.2163 2.7367 0.2915 16 6 0.0317 3.4140 2.5346 17 7 -1.2806 4.0252 2.3105 18 6 -2.3785 3.7947 3.0623 19 6 -3.3830 4.5394 2.5443 20 6 -2.8191 5.2178 1.4374 21 6 -3.5149 6.1544 0.5338 22 8 -4.6905 6.4066 0.7083 23 8 -2.8465 6.7298 -0.4848 24 7 -1.5538 4.8534 1.3671 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.8292 1.5958 -2.3912 31 1 -0.0390 2.6873 3.3439 32 1 0.7514 4.1875 2.8028 33 1 -2.4424 3.1401 3.9189 34 1 -4.4016 4.5996 2.8982 35 1 -3.3445 7.3365 -1.0496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980485.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:43 Heat of formation + Delta-G solvation = -92.709321 kcal Electronic energy + Delta-G solvation = -22085.604514 eV Core-core repulsion = 18472.250938 eV Total energy + Delta-G solvation = -3613.353577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.87526 -40.02600 -39.75554 -36.23767 -36.11098 -33.81997 -33.40513 -32.09048 -30.94244 -28.92654 -27.76834 -24.70752 -23.10937 -21.98703 -21.33665 -20.53852 -19.74129 -18.03538 -17.88732 -17.77054 -16.90446 -16.44633 -16.18227 -15.94438 -15.59540 -14.76649 -14.29158 -13.92258 -13.64340 -13.55631 -13.24011 -13.02717 -12.80067 -12.22552 -12.20913 -11.78806 -11.63487 -11.49541 -11.06410 -10.96865 -10.93175 -10.89683 -10.35544 -10.14481 -9.94531 -9.54517 -9.38569 -9.28370 -9.17511 -8.79180 -6.36906 -4.41859 1.26076 1.83618 2.07245 2.57473 2.95764 3.08985 3.16456 3.24699 3.30705 3.31608 4.19122 4.25840 4.55875 4.82150 4.89696 4.90903 5.20017 5.30436 5.45817 5.55841 5.77646 5.86002 5.92142 6.15986 6.29872 6.32808 6.48106 6.51776 6.65979 6.69621 7.04213 7.22108 7.39331 7.62443 7.93709 8.08240 8.42049 8.72320 9.21654 10.73919 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.004651 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.610431 B = 6019.261996 C = 6635.179686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.190 3.810 4 H 0.050 0.950 5 C -0.522 4.522 6 H 0.086 0.914 7 C 0.085 3.915 8 N -0.878 5.878 9 Si 0.867 3.133 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.260 1.260 13 O -0.343 6.343 14 C 0.436 3.564 15 O -0.491 6.491 16 C 0.122 3.878 17 N -0.266 5.266 18 C -0.014 4.014 19 C -0.173 4.173 20 C -0.018 4.018 21 C 0.580 3.420 22 O -0.515 6.515 23 O -0.498 6.498 24 N -0.199 5.199 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.272 0.728 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.189 0.811 34 H 0.166 0.834 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.150 4.466 9.027 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.137 3.863 4 H 0.068 0.932 5 C -0.558 4.558 6 H 0.104 0.896 7 C -0.120 4.120 8 N -0.514 5.514 9 Si 0.693 3.307 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.184 1.184 13 O -0.259 6.259 14 C 0.276 3.724 15 O -0.379 6.379 16 C 0.000 4.000 17 N -0.057 5.057 18 C -0.155 4.155 19 C -0.200 4.200 20 C -0.176 4.176 21 C 0.422 3.578 22 O -0.402 6.402 23 O -0.308 6.308 24 N -0.036 5.036 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.206 0.794 34 H 0.184 0.816 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -13.163 4.346 8.257 16.135 hybrid contribution -1.455 0.349 -0.854 1.723 sum -14.618 4.695 7.403 17.046 Atomic orbital electron populations 1.21920 0.97502 0.99873 1.01377 1.22107 0.93495 0.98770 1.02547 1.21125 0.96200 0.88775 0.80165 0.93230 1.20773 0.87685 1.51603 0.95787 0.89551 1.24897 0.94968 0.93489 0.98640 1.69844 1.09518 1.47150 1.24846 0.86988 0.81186 0.80089 0.82451 1.19397 1.20614 1.18414 1.86656 1.32963 1.62177 1.44084 1.22974 0.82116 0.78138 0.89178 1.90721 1.54797 1.57003 1.35350 1.21509 0.81523 0.99813 0.97129 1.45170 1.09867 1.30668 1.19998 1.22928 0.86082 1.05172 1.01309 1.21683 1.00838 1.00499 0.97000 1.20677 0.91798 1.04963 1.00155 1.19248 0.83481 0.77056 0.77985 1.90894 1.16292 1.60957 1.72062 1.84707 1.46911 1.58480 1.40688 1.73857 1.16560 1.05012 1.08151 0.94183 0.92774 0.93941 0.90866 0.91811 0.91818 0.83826 0.84586 0.79435 0.81615 0.72887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.57 37.16 0.32 -2.45 16 2 C -0.13 -2.74 5.63 -26.73 -0.15 -2.89 16 3 C 0.19 4.49 1.90 -27.88 -0.05 4.44 16 4 H 0.05 1.26 4.31 -51.93 -0.22 1.04 16 5 C -0.52 -14.18 9.25 -34.44 -0.32 -14.49 16 6 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 7 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 8 N -0.88 -25.44 13.96 55.43 0.77 -24.66 16 9 Si 0.87 21.12 26.99 -169.99 -4.59 16.53 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.26 -6.18 6.82 56.52 0.39 -5.80 16 13 O -0.34 -7.09 9.81 -39.25 -0.39 -7.48 16 14 C 0.44 7.81 6.44 36.00 0.23 8.04 16 15 O -0.49 -10.43 12.79 -18.76 -0.24 -10.67 16 16 C 0.12 1.41 6.99 -5.20 -0.04 1.38 16 17 N -0.27 -3.50 3.17 -62.52 -0.20 -3.70 16 18 C -0.01 -0.15 11.40 -17.17 -0.20 -0.34 16 19 C -0.17 -2.02 10.81 -39.35 -0.43 -2.44 16 20 C -0.02 -0.27 7.17 -82.79 -0.59 -0.86 16 21 C 0.58 8.33 8.34 34.54 0.29 8.62 16 22 O -0.52 -7.91 17.71 -19.26 -0.34 -8.26 16 23 O -0.50 -6.24 13.44 -40.59 -0.55 -6.78 16 24 N -0.20 -3.25 10.90 33.41 0.36 -2.88 16 25 H 0.04 0.71 6.05 -51.93 -0.31 0.39 16 26 H 0.05 1.08 7.83 -51.93 -0.41 0.68 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.14 0.99 8.04 -51.93 -0.42 0.57 16 32 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.19 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.41 2.80 9.11 45.56 0.42 3.21 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -35.82 312.15 -4.54 -40.37 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.06 Total: 1.57 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.03 Total: 1.26 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.94 Total: -31.24 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.51 Total: -33.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.59 Total: 16.53 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.82 -4.54 -40.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980485.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.343 kcal (2) G-P(sol) polarization free energy of solvation -35.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds