Wall clock time and date at job start Tue Mar 31 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47512 * 2 1 4 4 H 1.08998 * 109.46873 * 54.99287 * 3 2 1 5 5 C 1.50700 * 109.47432 * 174.99985 * 3 2 1 6 6 H 1.07998 * 119.99663 * 119.99789 * 5 3 2 7 7 C 1.37870 * 119.99574 * 299.99582 * 5 3 2 8 8 N 1.31514 * 119.99876 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00471 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.46958 * 89.99643 * 9 7 5 11 11 H 1.48501 * 109.47156 * 210.00081 * 9 7 5 12 12 H 1.48504 * 109.47002 * 330.00127 * 9 7 5 13 13 O 1.45203 * 109.46942 * 294.99838 * 3 2 1 14 14 C 1.34235 * 117.00118 * 89.99575 * 13 3 2 15 15 O 1.20825 * 119.99869 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00171 * 180.02562 * 14 13 3 17 17 N 1.46500 * 109.47211 * 180.02562 * 16 14 13 18 18 C 1.35051 * 124.87627 * 125.28028 * 17 16 14 19 19 C 1.35348 * 107.23725 * 180.13476 * 18 17 16 20 20 C 1.41550 * 105.50324 * 359.61790 * 19 18 17 21 21 C 1.47580 * 126.52396 * 180.23965 * 20 19 18 22 22 O 1.21489 * 120.00107 * 0.02562 * 21 20 19 23 23 O 1.34730 * 119.99939 * 179.97438 * 21 20 19 24 24 N 1.28466 * 124.88055 * 304.97144 * 17 16 14 25 25 H 1.08999 * 109.47022 * 300.00449 * 1 2 3 26 26 H 1.09007 * 109.46806 * 60.00123 * 1 2 3 27 27 H 1.08994 * 109.47385 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47022 * 239.99551 * 2 1 3 29 29 H 1.09007 * 109.46806 * 119.99877 * 2 1 3 30 30 H 0.97003 * 120.00578 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47024 * 60.00085 * 16 14 13 32 32 H 1.09006 * 109.46876 * 300.00206 * 16 14 13 33 33 H 1.07994 * 126.38591 * 0.02562 * 18 17 16 34 34 H 1.08002 * 127.25115 * 179.88760 * 19 18 17 35 35 H 0.96701 * 117.00598 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8887 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 5.4539 0.8804 1.3364 9 14 3.0963 0.1089 2.5701 10 1 2.8754 -1.3271 2.2634 11 1 3.7935 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 8 1.6560 2.0916 -1.2408 14 6 0.4728 2.7254 -1.2561 15 8 -0.2188 2.7377 -0.2655 16 6 0.0071 3.4215 -2.5089 17 7 -1.3029 4.0322 -2.2699 18 6 -1.5962 5.3349 -2.4725 19 6 -2.8958 5.5102 -2.1377 20 6 -3.3579 4.2347 -1.7337 21 6 -4.7203 3.8980 -1.2772 22 8 -5.5732 4.7614 -1.2222 23 8 -5.0185 2.6330 -0.9223 24 7 -2.3393 3.4045 -1.8430 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 5.8770 0.4819 2.1130 31 1 -0.0719 2.6968 -3.3192 32 1 0.7241 4.1957 -2.7823 33 1 -0.9193 6.0954 -2.8326 34 1 -3.4624 6.4289 -2.1753 35 1 -5.9241 2.4607 -0.6303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:45 Heat of formation + Delta-G solvation = -83.808435 kcal Electronic energy + Delta-G solvation = -22101.135701 eV Core-core repulsion = 18488.168095 eV Total energy + Delta-G solvation = -3612.967605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.90669 -40.09504 -39.81980 -36.34799 -36.15366 -33.91941 -33.54832 -31.99765 -30.96748 -28.96099 -27.74220 -24.75103 -22.97805 -22.06941 -21.44415 -20.65534 -19.89270 -18.06282 -17.84389 -17.78833 -16.79908 -16.57070 -16.37890 -15.87890 -15.47133 -15.13501 -14.25791 -14.05823 -13.69244 -13.50558 -13.34142 -13.01775 -12.89397 -12.29394 -12.02678 -11.84410 -11.67292 -11.55564 -11.30745 -11.01417 -10.96637 -10.82199 -10.29335 -10.09942 -9.74357 -9.66853 -9.42250 -9.29536 -9.19340 -8.74577 -6.32047 -4.35592 1.22674 1.80673 2.03754 2.50266 2.91625 3.05958 3.12778 3.23619 3.25714 3.28413 4.18566 4.23733 4.54892 4.80504 4.81966 4.97413 5.06990 5.25715 5.43553 5.53988 5.76613 5.85548 5.91874 6.13567 6.29482 6.32357 6.45923 6.52820 6.59944 6.67441 6.93869 7.22016 7.38528 7.58921 7.90179 8.04161 8.38792 8.73081 9.24309 10.79637 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.004286 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.535731 B = 6531.713921 C = 7123.657966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.201 3.799 4 H 0.047 0.953 5 C -0.529 4.529 6 H 0.088 0.912 7 C 0.082 3.918 8 N -0.886 5.886 9 Si 0.876 3.124 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.261 1.261 13 O -0.336 6.336 14 C 0.438 3.562 15 O -0.486 6.486 16 C 0.125 3.875 17 N -0.268 5.268 18 C -0.012 4.012 19 C -0.173 4.173 20 C -0.017 4.017 21 C 0.580 3.420 22 O -0.514 6.514 23 O -0.499 6.499 24 N -0.200 5.200 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.271 0.729 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.190 0.810 34 H 0.167 0.833 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.438 5.866 -8.943 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.147 3.853 4 H 0.065 0.935 5 C -0.567 4.567 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.522 5.522 9 Si 0.705 3.295 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.185 1.185 13 O -0.252 6.252 14 C 0.277 3.723 15 O -0.373 6.373 16 C 0.003 3.997 17 N -0.058 5.058 18 C -0.153 4.153 19 C -0.200 4.200 20 C -0.175 4.175 21 C 0.422 3.578 22 O -0.401 6.401 23 O -0.309 6.309 24 N -0.038 5.038 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.207 0.793 34 H 0.184 0.816 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -13.851 4.938 -8.468 16.969 hybrid contribution -1.124 0.167 0.984 1.504 sum -14.976 5.105 -7.484 17.503 Atomic orbital electron populations 1.21882 0.96607 1.00184 1.01914 1.22378 0.94555 0.99351 1.02340 1.21051 0.96384 0.88152 0.79680 0.93489 1.20756 0.87508 1.40370 1.08025 0.89398 1.24712 0.94950 0.95154 0.97334 1.69824 1.08490 1.44028 1.29851 0.87011 0.80977 0.80231 0.81309 1.19807 1.21581 1.18533 1.86475 1.33220 1.62298 1.43176 1.22915 0.81737 0.78374 0.89251 1.90735 1.54737 1.57040 1.34779 1.21440 0.80235 1.01228 0.96800 1.45132 1.08585 1.06890 1.45211 1.22950 0.98015 0.87026 1.07282 1.21698 0.94428 0.97940 1.05938 1.20671 0.91974 0.92859 1.11995 1.19241 0.85874 0.79858 0.72808 1.90898 1.48312 1.49340 1.51552 1.84694 1.38313 1.30133 1.77724 1.73811 0.93163 1.24980 1.11799 0.92614 0.93434 0.93852 0.91119 0.91706 0.91928 0.84676 0.83538 0.79329 0.81568 0.72885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.57 37.16 0.32 -2.58 16 2 C -0.15 -3.25 5.14 -26.73 -0.14 -3.39 16 3 C 0.20 4.77 1.84 -27.88 -0.05 4.72 16 4 H 0.05 1.20 6.21 -51.93 -0.32 0.88 16 5 C -0.53 -14.47 9.48 -34.44 -0.33 -14.80 16 6 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 7 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 8 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 9 Si 0.88 21.15 24.41 -169.99 -4.15 17.00 16 10 H -0.27 -6.30 6.83 56.52 0.39 -5.91 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 13 O -0.34 -6.84 9.81 -39.27 -0.39 -7.23 16 14 C 0.44 7.62 6.42 36.00 0.23 7.85 16 15 O -0.49 -10.08 12.79 -18.75 -0.24 -10.32 16 16 C 0.12 1.38 6.99 -5.20 -0.04 1.34 16 17 N -0.27 -3.38 3.17 -62.51 -0.20 -3.58 16 18 C -0.01 -0.12 11.40 -17.17 -0.20 -0.32 16 19 C -0.17 -1.97 10.81 -39.35 -0.43 -2.40 16 20 C -0.02 -0.25 7.17 -82.79 -0.59 -0.84 16 21 C 0.58 8.00 8.34 34.54 0.29 8.29 16 22 O -0.51 -7.69 17.71 -19.26 -0.34 -8.03 16 23 O -0.50 -5.85 13.44 -40.57 -0.55 -6.39 16 24 N -0.20 -3.11 10.90 33.41 0.36 -2.75 16 25 H 0.05 1.15 7.80 -51.93 -0.40 0.75 16 26 H 0.05 0.90 6.06 -51.93 -0.31 0.58 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.06 1.48 3.21 -51.93 -0.17 1.31 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.15 1.01 8.04 -51.93 -0.42 0.59 16 33 H 0.19 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.41 2.50 9.11 45.56 0.42 2.92 16 LS Contribution 305.59 15.07 4.61 4.61 Total: -1.00 -35.96 305.59 -4.07 -40.04 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -2.93 Total: 1.71 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.03 Total: 0.06 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.94 Total: -31.44 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.51 Total: -31.97 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.15 Total: 17.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.96 -4.07 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.772 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds