Wall clock time and date at job start Tue Mar 31 2020 05:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47146 * 2 1 4 4 N 1.30004 * 127.33883 * 269.99992 * 3 2 1 5 5 O 1.20644 * 112.32762 * 179.97438 * 4 3 2 6 6 C 1.33522 * 113.16119 * 359.71899 * 5 4 3 7 7 C 1.37431 * 106.32275 * 0.44715 * 6 5 4 8 8 C 1.47318 * 128.56949 * 179.85426 * 7 6 5 9 9 O 1.21632 * 120.00014 * 187.27989 * 8 7 6 10 10 N 1.34781 * 119.99972 * 7.28201 * 8 7 6 11 11 C 1.36971 * 119.99822 * 356.40454 * 10 8 7 12 12 H 1.07997 * 119.99958 * 53.60137 * 11 10 8 13 13 C 1.38982 * 119.99952 * 233.32031 * 11 10 8 14 14 N 1.31414 * 119.99776 * 5.40030 * 13 11 10 15 15 Si 1.86797 * 119.99866 * 185.40294 * 13 11 10 16 16 H 1.48497 * 109.47177 * 90.00172 * 15 13 11 17 17 H 1.48501 * 109.46979 * 209.99661 * 15 13 11 18 18 H 1.48499 * 109.47247 * 329.99925 * 15 13 11 19 19 C 1.46497 * 119.99671 * 176.40752 * 10 8 7 20 20 C 1.52993 * 109.47194 * 275.06782 * 19 10 8 21 21 C 1.50703 * 109.47253 * 180.02562 * 20 19 10 22 22 O 1.20826 * 120.00034 * 0.02562 * 21 20 19 23 23 O 1.34230 * 119.99823 * 180.02562 * 21 20 19 24 24 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47048 * 299.99622 * 1 2 3 26 26 H 1.08996 * 109.47157 * 59.99963 * 1 2 3 27 27 H 1.08997 * 109.46975 * 239.99750 * 2 1 3 28 28 H 1.09001 * 109.46888 * 120.00403 * 2 1 3 29 29 H 1.07999 * 126.84174 * 180.30508 * 6 5 4 30 30 H 0.96996 * 119.99758 * 180.02562 * 14 13 11 31 31 H 1.08999 * 109.47510 * 35.07371 * 19 10 8 32 32 H 1.09005 * 109.46634 * 155.06680 * 19 10 8 33 33 H 1.09001 * 109.47539 * 300.00151 * 20 19 10 34 34 H 1.09005 * 109.47413 * 60.00375 * 20 19 10 35 35 H 0.96707 * 116.99662 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2952 2.1642 -1.0336 5 8 2.6832 3.2630 -0.7211 6 6 2.7402 3.4436 0.6006 7 6 2.3292 2.2622 1.1699 8 6 2.2094 1.9240 2.5988 9 8 1.9541 0.7831 2.9344 10 7 2.3826 2.8789 3.5341 11 6 2.7424 4.1465 3.1602 12 1 2.1596 4.6777 2.4223 13 6 3.8540 4.7514 3.7348 14 7 4.6211 4.0707 4.5565 15 14 4.2575 6.5318 3.3389 16 1 3.5784 7.4219 4.3144 17 1 5.7260 6.7365 3.4210 18 1 3.7889 6.8523 1.9667 19 6 2.1862 2.5608 4.9506 20 6 0.7027 2.6904 5.3014 21 6 0.5007 2.3638 6.7587 22 8 1.4464 2.0591 7.4463 23 8 -0.7298 2.4114 7.2929 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.0500 4.3389 1.1191 30 1 5.3966 4.4930 4.9578 31 1 2.5174 1.5403 5.1432 32 1 2.7660 3.2524 5.5620 33 1 0.3715 3.7109 5.1089 34 1 0.1229 1.9988 4.6900 35 1 -0.8096 2.1933 8.2316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605880367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:30 Heat of formation + Delta-G solvation = -70.347899 kcal Electronic energy + Delta-G solvation = -22610.939877 eV Core-core repulsion = 18998.555964 eV Total energy + Delta-G solvation = -3612.383913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.11422 -39.90237 -38.59099 -35.88548 -35.23330 -34.47772 -32.33193 -31.78278 -30.64476 -30.09644 -25.53988 -25.08058 -23.82216 -22.64728 -20.68094 -20.07757 -19.48334 -18.07415 -17.67146 -16.95741 -16.31971 -16.08472 -15.73908 -15.53066 -14.73757 -14.58921 -13.97183 -13.78993 -13.78457 -12.97648 -12.83115 -12.70976 -12.52538 -12.18731 -11.88385 -11.34858 -11.30783 -11.25138 -11.22044 -11.14331 -10.89560 -10.57521 -10.43443 -10.23698 -10.17377 -9.30791 -9.25631 -8.84908 -8.81353 -7.62126 -6.61180 -4.56561 2.01493 2.45625 2.59349 2.97371 3.04334 3.07923 3.33732 3.78657 3.88525 4.28481 4.53892 4.68472 4.82326 5.09435 5.49941 5.59874 5.62412 5.68752 5.70845 5.87404 5.93784 6.12072 6.15545 6.21764 6.29481 6.46712 6.56897 6.66341 6.75965 6.80660 7.06351 7.18826 7.79241 8.03669 8.23315 8.76379 8.89847 9.22911 9.66986 10.40866 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.007857 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.065593 B = 3562.918554 C = 5447.309606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.042 4.042 3 C 0.053 3.947 4 N -0.379 5.379 5 O 0.069 5.931 6 C -0.010 4.010 7 C -0.222 4.222 8 C 0.559 3.441 9 O -0.589 6.589 10 N -0.432 5.432 11 C -0.370 4.370 12 H 0.093 0.907 13 C 0.055 3.945 14 N -0.844 5.844 15 Si 0.911 3.089 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.262 1.262 19 C 0.140 3.860 20 C -0.127 4.127 21 C 0.483 3.517 22 O -0.514 6.514 23 O -0.524 6.524 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.248 0.752 30 H 0.276 0.724 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 0.538 -1.659 6.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 C -0.110 4.110 4 N -0.089 5.089 5 O 0.011 5.989 6 C -0.090 4.090 7 C -0.229 4.229 8 C 0.349 3.651 9 O -0.475 6.475 10 N -0.150 5.150 11 C -0.497 4.497 12 H 0.110 0.890 13 C -0.155 4.155 14 N -0.476 5.476 15 Si 0.736 3.264 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.186 1.186 19 C 0.017 3.983 20 C -0.166 4.166 21 C 0.326 3.674 22 O -0.401 6.401 23 O -0.336 6.336 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.264 0.736 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.068 -0.130 -2.878 6.718 hybrid contribution 0.296 0.881 1.525 1.786 sum -5.773 0.751 -1.353 5.976 Atomic orbital electron populations 1.21633 0.94379 1.01682 1.01956 1.19921 0.96138 0.88235 1.03749 1.24783 1.00259 0.98516 0.87460 1.73496 1.17702 0.93366 1.24325 1.84497 1.62950 1.26320 1.25130 1.28175 0.97234 1.02158 0.81405 1.22290 1.10884 0.94093 0.95678 1.17292 0.79811 0.84491 0.83510 1.90625 1.54524 1.20218 1.82093 1.42985 1.59706 1.08810 1.03540 1.19406 1.10842 0.91376 1.28104 0.88995 1.25714 0.94623 0.99696 0.95483 1.69844 1.14195 1.36790 1.26772 0.86186 0.78428 0.82068 0.79710 1.19727 1.20336 1.18628 1.21051 0.90272 1.02774 0.84250 1.21900 1.02678 1.04595 0.87458 1.23739 0.79545 0.72673 0.91485 1.90712 1.42199 1.44175 1.63058 1.84589 1.34063 1.82892 1.32056 0.92137 0.92124 0.93149 0.91008 0.88218 0.73647 0.91297 0.91388 0.87870 0.87728 0.88282 0.74045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 37.16 0.37 -1.66 16 2 C -0.04 -0.71 6.25 -27.88 -0.17 -0.88 16 3 C 0.05 1.03 6.84 -79.76 -0.55 0.49 16 4 N -0.38 -7.31 12.01 34.79 0.42 -6.89 16 5 O 0.07 1.27 11.06 18.58 0.21 1.48 16 6 C -0.01 -0.18 10.61 30.44 0.32 0.14 16 7 C -0.22 -4.71 6.33 -102.89 -0.65 -5.36 16 8 C 0.56 13.08 7.60 -12.57 -0.10 12.98 16 9 O -0.59 -14.64 15.30 5.25 0.08 -14.56 16 10 N -0.43 -9.94 2.41 -116.07 -0.28 -10.22 16 11 C -0.37 -8.16 6.47 -14.98 -0.10 -8.26 16 12 H 0.09 1.87 5.86 -52.49 -0.31 1.56 16 13 C 0.06 1.24 5.17 -17.45 -0.09 1.15 16 14 N -0.84 -20.78 11.81 55.50 0.66 -20.12 16 15 Si 0.91 17.05 29.56 -169.99 -5.02 12.02 16 16 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 17 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 19 C 0.14 3.13 4.16 -4.05 -0.02 3.11 16 20 C -0.13 -2.32 6.10 -27.88 -0.17 -2.49 16 21 C 0.48 8.33 8.33 36.01 0.30 8.63 16 22 O -0.51 -10.44 16.74 -18.75 -0.31 -10.75 16 23 O -0.52 -7.01 13.42 -39.26 -0.53 -7.54 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.10 1.81 7.01 -51.93 -0.36 1.44 16 29 H 0.25 4.40 5.05 -52.49 -0.27 4.14 16 30 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.07 1.65 7.49 -51.93 -0.39 1.26 16 32 H 0.10 2.49 6.25 -51.93 -0.32 2.17 16 33 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.40 3.46 9.10 45.56 0.41 3.88 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -28.98 309.32 -3.88 -32.86 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -2.91 Total: 11.19 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -0.85 Total: 7.86 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.79 Total: -37.23 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.55 Total: -31.37 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.02 Total: 12.02 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.98 -3.88 -32.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605880367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.488 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds