Wall clock time and date at job start Tue Mar 31 2020 05:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29936 * 125.36813 * 2 1 4 4 C 1.36073 * 108.48405 * 179.97438 * 3 2 1 5 5 C 1.47330 * 126.45745 * 179.97438 * 4 3 2 6 6 O 1.21641 * 120.00291 * 185.70275 * 5 4 3 7 7 N 1.34778 * 119.99771 * 5.69615 * 5 4 3 8 8 C 1.36943 * 120.00153 * 5.23184 * 7 5 4 9 9 H 1.08000 * 120.00112 * 39.28420 * 8 7 5 10 10 C 1.38990 * 119.99919 * 219.29244 * 8 7 5 11 11 N 1.31406 * 120.00257 * 18.36101 * 10 8 7 12 12 Si 1.86805 * 119.99775 * 198.36788 * 10 8 7 13 13 H 1.48500 * 109.47152 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47145 * 119.99620 * 12 10 8 15 15 H 1.48495 * 109.46956 * 239.99498 * 12 10 8 16 16 C 1.46498 * 119.99636 * 184.95369 * 7 5 4 17 17 C 1.53004 * 109.47341 * 270.27530 * 16 7 5 18 18 C 1.50699 * 109.47284 * 180.02562 * 17 16 7 19 19 O 1.20817 * 119.99849 * 0.02562 * 18 17 16 20 20 O 1.34224 * 119.99558 * 179.97438 * 18 17 16 21 21 C 1.36184 * 107.08694 * 0.26001 * 4 3 2 22 22 C 1.50705 * 126.52926 * 179.73971 * 21 4 3 23 23 O 1.34051 * 125.36687 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.46897 * 90.00296 * 1 2 3 25 25 H 1.08993 * 109.47069 * 210.00395 * 1 2 3 26 26 H 1.08994 * 109.47183 * 330.00445 * 1 2 3 27 27 H 0.96998 * 119.99823 * 174.98170 * 11 10 8 28 28 H 1.08997 * 109.47468 * 30.27554 * 16 7 5 29 29 H 1.09003 * 109.47029 * 150.27632 * 16 7 5 30 30 H 1.09006 * 109.46700 * 300.00276 * 17 16 7 31 31 H 1.09003 * 109.46975 * 60.00069 * 17 16 7 32 32 H 0.96702 * 116.99846 * 179.97438 * 20 18 17 33 33 H 1.09004 * 109.46853 * 90.00330 * 22 21 4 34 34 H 1.09006 * 109.46532 * 209.99617 * 22 21 4 35 35 H 1.08988 * 109.47561 * 329.99895 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2591 1.0596 0.0000 4 6 3.5612 0.6644 0.0006 5 6 4.7431 1.5440 0.0003 6 8 5.8569 1.0662 -0.1038 7 7 4.5902 2.8781 0.1152 8 6 3.3476 3.4081 0.3396 9 1 2.6615 2.9112 1.0095 10 6 2.9693 4.5854 -0.2950 11 7 3.6217 4.9976 -1.3585 12 14 1.5333 5.5820 0.3643 13 1 0.9711 4.9075 1.5619 14 1 2.0030 6.9409 0.7358 15 1 0.4841 5.6894 -0.6810 16 6 5.7543 3.7608 0.0060 17 6 6.3720 3.9639 1.3910 18 6 7.5691 4.8725 1.2788 19 8 7.8944 5.3127 0.2018 20 8 8.2731 5.1933 2.3757 21 6 3.5660 -0.6975 -0.0050 22 6 4.7802 -1.5902 -0.0121 23 8 2.2829 -1.0931 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 3.3136 5.7788 -1.8440 28 1 6.4915 3.3096 -0.6580 29 1 5.4431 4.7243 -0.3978 30 1 5.6347 4.4152 2.0550 31 1 6.6832 3.0005 1.7948 32 1 9.0330 5.7788 2.2538 33 1 5.0758 -1.8096 1.0139 34 1 4.5441 -2.5204 -0.5290 35 1 5.5986 -1.0864 -0.5262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607944348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:31 Heat of formation + Delta-G solvation = -97.802685 kcal Electronic energy + Delta-G solvation = -22571.446589 eV Core-core repulsion = 18957.872148 eV Total energy + Delta-G solvation = -3613.574441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.68124 -39.81347 -38.40362 -35.80153 -35.01062 -34.12526 -32.46501 -31.85351 -30.55788 -29.60075 -25.86478 -25.16732 -23.94112 -22.16832 -20.90987 -20.05407 -19.20442 -17.79456 -17.44620 -16.41464 -16.22038 -15.73845 -15.51030 -15.15013 -14.45443 -14.35396 -13.66676 -13.59066 -13.38639 -13.14253 -12.72613 -12.65268 -12.42189 -12.39210 -12.28358 -11.81793 -11.73087 -11.21450 -11.14029 -11.06270 -10.83783 -10.34501 -10.33184 -10.12744 -10.06362 -9.62607 -9.13428 -8.66325 -8.08243 -7.49825 -6.31896 -3.97262 1.80416 2.68275 2.86955 3.10165 3.18202 3.25286 3.30020 3.44871 4.13410 4.36585 4.46612 4.77693 5.06847 5.24933 5.46126 5.59266 5.60665 5.76479 5.78439 5.82776 5.84638 5.96441 6.09210 6.19348 6.34061 6.49560 6.57284 6.73041 6.84703 6.97296 7.32505 7.65356 7.85558 8.30450 8.31998 8.50578 9.11458 9.42312 9.84113 10.71358 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.007182 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.524877 B = 3897.728007 C = 5480.471271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.150 3.850 3 N -0.408 5.408 4 C -0.019 4.019 5 C 0.535 3.465 6 O -0.602 6.602 7 N -0.413 5.413 8 C -0.313 4.313 9 H 0.109 0.891 10 C 0.043 3.957 11 N -0.863 5.863 12 Si 0.918 3.082 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.126 3.874 17 C -0.124 4.124 18 C 0.484 3.516 19 O -0.514 6.514 20 O -0.524 6.524 21 C -0.011 4.011 22 C -0.063 4.063 23 O -0.211 6.211 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.270 0.730 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.401 0.599 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 -5.813 5.407 8.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.058 4.058 3 N -0.138 5.138 4 C -0.140 4.140 5 C 0.324 3.676 6 O -0.490 6.490 7 N -0.128 5.128 8 C -0.441 4.441 9 H 0.126 0.874 10 C -0.163 4.163 11 N -0.500 5.500 12 Si 0.744 3.256 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.002 3.998 17 C -0.163 4.163 18 C 0.326 3.674 19 O -0.402 6.402 20 O -0.336 6.336 21 C -0.067 4.067 22 C -0.120 4.120 23 O -0.100 6.100 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.259 0.741 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.717 -5.338 5.000 7.513 hybrid contribution -0.173 0.343 0.062 0.389 sum -1.890 -4.995 5.063 7.359 Atomic orbital electron populations 1.20117 0.81987 1.04384 1.04092 1.26430 0.96500 0.79022 1.03840 1.71426 1.01029 1.27334 1.14006 1.21640 0.92463 0.91290 1.08638 1.17078 0.85578 0.82975 0.81942 1.90598 1.24721 1.75607 1.58031 1.43329 1.07486 1.02988 1.58997 1.19824 0.91371 1.06418 1.26489 0.87366 1.25461 0.98054 0.98399 0.94349 1.69839 1.39756 1.25361 1.15004 0.86007 0.80972 0.79291 0.79280 1.19029 1.20823 1.20715 1.21270 0.87585 0.98943 0.92004 1.21838 0.92431 0.98292 1.03755 1.23756 0.83538 0.79098 0.81012 1.90702 1.68304 1.51960 1.29193 1.84590 1.44009 1.65217 1.39795 1.23527 0.83385 0.94919 1.04830 1.20394 0.91013 0.96996 1.03550 1.84183 1.16569 1.38357 1.70870 0.89588 0.90191 0.88337 0.91970 0.91462 0.86326 0.87639 0.88317 0.74144 0.90302 0.91450 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.59 10.51 36.01 0.38 -0.21 16 2 C 0.15 2.71 8.30 -13.08 -0.11 2.60 16 3 N -0.41 -9.10 8.33 -7.66 -0.06 -9.16 16 4 C -0.02 -0.45 6.67 -83.03 -0.55 -1.00 16 5 C 0.53 13.47 7.62 -12.56 -0.10 13.38 16 6 O -0.60 -15.31 14.42 5.24 0.08 -15.23 16 7 N -0.41 -10.54 2.50 -116.06 -0.29 -10.83 16 8 C -0.31 -8.05 7.70 -14.99 -0.12 -8.17 16 9 H 0.11 2.80 6.33 -52.49 -0.33 2.47 16 10 C 0.04 1.10 5.02 -17.46 -0.09 1.02 16 11 N -0.86 -23.36 11.41 55.50 0.63 -22.73 16 12 Si 0.92 19.91 29.60 -169.99 -5.03 14.88 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 C 0.13 3.03 4.25 -4.04 -0.02 3.02 16 17 C -0.12 -2.46 6.13 -27.88 -0.17 -2.63 16 18 C 0.48 8.91 8.33 36.01 0.30 9.21 16 19 O -0.51 -11.00 16.74 -18.74 -0.31 -11.31 16 20 O -0.52 -7.50 13.42 -39.24 -0.53 -8.03 16 21 C -0.01 -0.22 7.44 -35.04 -0.26 -0.48 16 22 C -0.06 -0.99 9.94 36.01 0.36 -0.63 16 23 O -0.21 -3.83 10.73 6.46 0.07 -3.76 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.27 6.93 8.32 -40.82 -0.34 6.59 16 28 H 0.07 1.71 7.46 -51.93 -0.39 1.32 16 29 H 0.12 3.12 5.50 -51.93 -0.29 2.83 16 30 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 31 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 32 H 0.40 3.78 9.10 45.56 0.41 4.20 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.11 1.95 6.39 -51.94 -0.33 1.62 16 LS Contribution 310.46 15.07 4.68 4.68 Total: -1.00 -33.12 310.46 -4.16 -37.28 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.02 Total: 8.11 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: -0.37 Total: 16.11 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.28 Total: -42.72 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.70 Total: -38.34 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.12 -4.16 -37.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607944348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.525 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds