Wall clock time and date at job start Tue Mar 31 2020 05:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29936 * 125.36813 * 2 1 4 4 C 1.36073 * 108.48405 * 179.97438 * 3 2 1 5 5 C 1.47330 * 126.45745 * 179.97438 * 4 3 2 6 6 O 1.21641 * 120.00291 * 185.70275 * 5 4 3 7 7 N 1.34778 * 119.99771 * 5.69615 * 5 4 3 8 8 C 1.36943 * 120.00153 * 5.23184 * 7 5 4 9 9 H 1.08000 * 120.00112 * 39.28420 * 8 7 5 10 10 C 1.38990 * 119.99919 * 219.29244 * 8 7 5 11 11 N 1.31406 * 120.00257 * 18.36101 * 10 8 7 12 12 Si 1.86805 * 119.99775 * 198.36788 * 10 8 7 13 13 H 1.48500 * 109.47152 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47145 * 119.99620 * 12 10 8 15 15 H 1.48495 * 109.46956 * 239.99498 * 12 10 8 16 16 C 1.46498 * 119.99636 * 184.95369 * 7 5 4 17 17 C 1.53004 * 109.47341 * 270.27530 * 16 7 5 18 18 C 1.50699 * 109.47284 * 180.02562 * 17 16 7 19 19 O 1.20817 * 119.99849 * 0.02562 * 18 17 16 20 20 O 1.34224 * 119.99558 * 179.97438 * 18 17 16 21 21 C 1.36184 * 107.08694 * 0.26001 * 4 3 2 22 22 C 1.50705 * 126.52926 * 179.73971 * 21 4 3 23 23 O 1.34051 * 125.36687 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.46897 * 90.00296 * 1 2 3 25 25 H 1.08993 * 109.47069 * 210.00395 * 1 2 3 26 26 H 1.08994 * 109.47183 * 330.00445 * 1 2 3 27 27 H 0.96998 * 119.99823 * 174.98170 * 11 10 8 28 28 H 1.08997 * 109.47468 * 30.27554 * 16 7 5 29 29 H 1.09003 * 109.47029 * 150.27632 * 16 7 5 30 30 H 1.09006 * 109.46700 * 300.00276 * 17 16 7 31 31 H 1.09003 * 109.46975 * 60.00069 * 17 16 7 32 32 H 0.96702 * 116.99846 * 179.97438 * 20 18 17 33 33 H 1.09004 * 109.46853 * 90.00330 * 22 21 4 34 34 H 1.09006 * 109.46532 * 209.99617 * 22 21 4 35 35 H 1.08988 * 109.47561 * 329.99895 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2591 1.0596 0.0000 4 6 3.5612 0.6644 0.0006 5 6 4.7431 1.5440 0.0003 6 8 5.8569 1.0662 -0.1038 7 7 4.5902 2.8781 0.1152 8 6 3.3476 3.4081 0.3396 9 1 2.6615 2.9112 1.0095 10 6 2.9693 4.5854 -0.2950 11 7 3.6217 4.9976 -1.3585 12 14 1.5333 5.5820 0.3643 13 1 0.9711 4.9075 1.5619 14 1 2.0030 6.9409 0.7358 15 1 0.4841 5.6894 -0.6810 16 6 5.7543 3.7608 0.0060 17 6 6.3720 3.9639 1.3910 18 6 7.5691 4.8725 1.2788 19 8 7.8944 5.3127 0.2018 20 8 8.2731 5.1933 2.3757 21 6 3.5660 -0.6975 -0.0050 22 6 4.7802 -1.5902 -0.0121 23 8 2.2829 -1.0931 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 3.3136 5.7788 -1.8440 28 1 6.4915 3.3096 -0.6580 29 1 5.4431 4.7243 -0.3978 30 1 5.6347 4.4152 2.0550 31 1 6.6832 3.0005 1.7948 32 1 9.0330 5.7788 2.2538 33 1 5.0758 -1.8096 1.0139 34 1 4.5441 -2.5204 -0.5290 35 1 5.5986 -1.0864 -0.5262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607944348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:30 Heat of formation + Delta-G solvation = -122.631029 kcal Electronic energy + Delta-G solvation = -22572.523227 eV Core-core repulsion = 18957.872148 eV Total energy + Delta-G solvation = -3614.651079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.18511 -41.32945 -40.25073 -37.25879 -36.84760 -35.66888 -33.94470 -33.66354 -32.30600 -30.78391 -27.42988 -27.08098 -25.55504 -23.71608 -22.40854 -21.62075 -21.03900 -19.39201 -19.01720 -17.94758 -17.84383 -17.46162 -17.05358 -16.73480 -16.21395 -16.08531 -15.49411 -14.99040 -14.91512 -14.33497 -14.28260 -14.17163 -14.01434 -13.56890 -13.46296 -13.40185 -13.12822 -12.95596 -12.82973 -12.67279 -12.55912 -12.04743 -11.95845 -11.92049 -11.66629 -11.28379 -11.02891 -10.54635 -9.67733 -9.37558 -8.25209 -5.97125 0.26095 1.18941 1.27043 1.47576 1.49128 1.61737 1.69840 2.00365 2.35635 2.53790 2.86551 3.13170 3.35559 3.86770 3.98433 4.08382 4.23192 4.31606 4.50614 4.57894 4.65245 4.71245 4.71878 4.76646 4.88839 4.99080 5.06197 5.26580 5.34513 5.42246 5.58433 5.69245 5.94858 6.51304 6.80338 7.00554 7.17003 7.50402 7.90980 8.78797 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.007182 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.524877 B = 3897.728007 C = 5480.471271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.164 3.836 3 N -0.455 5.455 4 C -0.070 4.070 5 C 0.525 3.475 6 O -0.617 6.617 7 N -0.428 5.428 8 C -0.315 4.315 9 H 0.106 0.894 10 C 0.000 4.000 11 N -0.902 5.902 12 Si 0.983 3.017 13 H -0.254 1.254 14 H -0.280 1.280 15 H -0.281 1.281 16 C 0.132 3.868 17 C -0.115 4.115 18 C 0.497 3.503 19 O -0.549 6.549 20 O -0.506 6.506 21 C 0.006 3.994 22 C -0.061 4.061 23 O -0.202 6.202 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.269 0.731 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.427 0.573 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 -6.924 6.877 10.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.045 4.045 3 N -0.185 5.185 4 C -0.190 4.190 5 C 0.316 3.684 6 O -0.505 6.505 7 N -0.143 5.143 8 C -0.443 4.443 9 H 0.124 0.876 10 C -0.202 4.202 11 N -0.540 5.540 12 Si 0.807 3.193 13 H -0.178 1.178 14 H -0.206 1.206 15 H -0.207 1.207 16 C 0.008 3.992 17 C -0.154 4.154 18 C 0.341 3.659 19 O -0.440 6.440 20 O -0.320 6.320 21 C -0.050 4.050 22 C -0.117 4.117 23 O -0.090 6.090 24 H 0.123 0.877 25 H 0.134 0.866 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.289 0.711 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.137 -6.439 6.507 9.677 hybrid contribution 0.299 0.558 -0.384 0.741 sum -2.838 -5.881 6.123 8.952 Atomic orbital electron populations 1.20483 0.77740 1.06387 1.05906 1.27564 0.98306 0.77984 1.00601 1.71293 1.01162 1.29533 1.16486 1.21525 0.92424 0.92520 1.12507 1.17514 0.86421 0.83257 0.81246 1.90558 1.25490 1.75942 1.58548 1.43528 1.07831 1.03374 1.59609 1.19914 0.91514 1.06524 1.26324 0.87644 1.26270 1.00610 0.99078 0.94221 1.69972 1.41570 1.25991 1.16484 0.85024 0.77781 0.77657 0.78878 1.17754 1.20553 1.20660 1.21032 0.86895 0.97228 0.94039 1.21580 0.93435 0.99290 1.01101 1.23276 0.83201 0.78315 0.81150 1.90703 1.69245 1.53316 1.30707 1.84500 1.44688 1.65432 1.37339 1.24065 0.84766 0.94256 1.01938 1.20507 0.88711 0.97437 1.05038 1.84237 1.15963 1.38194 1.70642 0.87680 0.86643 0.87815 0.92088 0.94075 0.88635 0.86590 0.87713 0.71113 0.88239 0.87859 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.00 10.51 71.24 0.75 -0.26 16 2 C 0.16 5.63 8.30 88.39 0.73 6.37 16 3 N -0.46 -20.23 8.33 -293.04 -2.44 -22.67 16 4 C -0.07 -3.29 6.67 40.40 0.27 -3.02 16 5 C 0.53 27.33 7.62 86.64 0.66 27.99 16 6 O -0.62 -32.41 14.42 -4.16 -0.06 -32.47 16 7 N -0.43 -22.64 2.50 -639.34 -1.60 -24.24 16 8 C -0.31 -16.56 7.70 84.08 0.65 -15.92 16 9 H 0.11 5.54 6.33 -2.91 -0.02 5.52 16 10 C 0.00 0.00 5.02 84.94 0.43 0.42 16 11 N -0.90 -50.51 11.41 21.67 0.25 -50.27 16 12 Si 0.98 41.00 29.60 68.60 2.03 43.03 16 13 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 14 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 15 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 16 C 0.13 6.66 4.25 86.38 0.37 7.02 16 17 C -0.12 -4.63 6.13 29.85 0.18 -4.45 16 18 C 0.50 18.17 8.33 71.24 0.59 18.76 16 19 O -0.55 -23.87 16.74 21.99 0.37 -23.50 16 20 O -0.51 -13.43 13.42 -51.36 -0.69 -14.12 16 21 C 0.01 0.24 7.44 25.21 0.19 0.43 16 22 C -0.06 -1.80 9.94 71.24 0.71 -1.09 16 23 O -0.20 -6.86 10.73 0.21 0.00 -6.86 16 24 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 25 H 0.12 1.61 8.14 -2.39 -0.02 1.60 16 26 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.27 14.30 8.32 -92.71 -0.77 13.52 16 28 H 0.04 2.22 7.46 -2.39 -0.02 2.20 16 29 H 0.10 5.29 5.50 -2.39 -0.01 5.27 16 30 H 0.12 4.39 8.14 -2.38 -0.02 4.37 16 31 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 32 H 0.43 6.94 9.10 -74.06 -0.67 6.26 16 33 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.09 3.13 6.39 -2.39 -0.02 3.12 16 Total: -1.00 -74.95 310.46 3.86 -71.10 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.48 Total: 23.75 kcal Atomic # 6 Polarization: 30.73 SS G_CDS: 5.52 Total: 36.26 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -3.79 Total: -97.18 kcal Atomic # 8 Polarization: -76.58 SS G_CDS: -0.38 Total: -76.96 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -74.95 3.86 -71.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607944348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.536 kcal (2) G-P(sol) polarization free energy of solvation -74.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds