Wall clock time and date at job start Tue Mar 31 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48498 * 109.46812 * 269.99759 * 3 2 1 5 5 H 1.48502 * 109.47120 * 29.98964 * 3 2 1 6 6 H 1.48494 * 109.47357 * 149.99683 * 3 2 1 7 7 C 1.37876 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00515 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.40194 * 119.99945 * 180.27819 * 14 12 11 16 16 C 1.40400 * 125.97290 * 359.43673 * 15 14 12 17 17 C 1.35239 * 107.86865 * 179.88873 * 16 15 14 18 18 N 1.34968 * 107.85948 * 0.37291 * 17 16 15 19 19 C 1.46493 * 125.97615 * 179.73033 * 18 17 16 20 20 C 1.50710 * 109.47191 * 125.01636 * 19 18 17 21 21 O 1.20825 * 119.99621 * 359.97438 * 20 19 18 22 22 O 1.34224 * 120.00043 * 179.97438 * 20 19 18 23 23 N 1.31208 * 125.97117 * 179.74638 * 15 14 12 24 24 H 0.96999 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 26 26 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 27 27 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 28 28 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 29 29 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 30 30 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 31 31 H 1.08006 * 126.06392 * 0.02562 * 16 15 14 32 32 H 1.08007 * 126.07507 * 180.11544 * 17 16 15 33 33 H 1.08998 * 109.47186 * 245.01344 * 19 18 17 34 34 H 1.08999 * 109.47486 * 5.01412 * 19 18 17 35 35 H 0.96706 * 117.00044 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4866 -2.6365 0.0009 12 6 6.1605 -3.8037 0.0014 13 8 5.5526 -4.8567 0.0013 14 7 7.5083 -3.8037 0.0018 15 6 8.2092 -5.0178 -0.0036 16 6 7.6376 -6.3001 0.0013 17 6 8.6443 -7.2032 -0.0092 18 7 9.8102 -6.5234 -0.0121 19 6 11.1508 -7.1140 -0.0172 20 6 11.9355 -6.5689 -1.1827 21 8 11.4269 -5.7694 -1.9323 22 8 13.1994 -6.9716 -1.3879 23 7 9.5142 -5.1542 -0.0085 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6585 -3.1503 -0.8892 28 1 3.6580 -3.1505 0.8909 29 1 5.9716 -1.7965 0.0006 30 1 7.9932 -2.9636 0.0015 31 1 6.5814 -6.5254 0.0096 32 1 8.5347 -8.2777 -0.0105 33 1 11.6613 -6.8646 0.9130 34 1 11.0703 -8.1972 -0.1082 35 1 13.6626 -6.5939 -2.1481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:32 Heat of formation + Delta-G solvation = -25.495370 kcal Electronic energy + Delta-G solvation = -20823.636673 eV Core-core repulsion = 17245.490464 eV Total energy + Delta-G solvation = -3578.146210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.56722 -40.48547 -39.59522 -36.60741 -35.47302 -34.68885 -33.08735 -32.54071 -30.28008 -29.94721 -27.68914 -24.99074 -22.77023 -22.09433 -21.00877 -20.77272 -20.15858 -18.61402 -17.94858 -17.51116 -17.19141 -16.84878 -16.58677 -15.85827 -15.57158 -14.72224 -14.67315 -14.12230 -14.01371 -13.68314 -13.56737 -13.29100 -13.09204 -12.90673 -12.60144 -11.97823 -11.49728 -11.36889 -11.17501 -10.83050 -10.72206 -10.38499 -10.23684 -9.97337 -9.76346 -9.32667 -8.91255 -8.72303 -8.59786 -8.19147 -6.10469 -4.10673 1.55147 1.70164 1.85275 2.48024 2.72229 2.95627 3.26418 3.34210 3.35127 3.58211 4.13316 4.34820 4.38444 4.52303 4.58412 4.72403 5.20460 5.22524 5.55874 5.75218 5.99369 6.01149 6.21807 6.22183 6.55952 6.67437 6.73779 6.82368 6.94986 7.17158 7.23629 7.39150 7.62159 7.67309 8.16623 8.44679 8.71831 8.94016 9.49514 11.02471 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.043660 B = 0.002613 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.160173 B =10714.922293 C =11184.778064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.148 3.852 11 N -0.732 5.732 12 C 0.708 3.292 13 O -0.570 6.570 14 N -0.652 5.652 15 C 0.329 3.671 16 C -0.251 4.251 17 C 0.059 3.941 18 N -0.377 5.377 19 C 0.157 3.843 20 C 0.459 3.541 21 O -0.481 6.481 22 O -0.518 6.518 23 N -0.311 5.311 24 H 0.265 0.735 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.395 0.605 30 H 0.410 0.590 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.619 -14.603 0.354 30.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.095 0.905 9 C -0.060 4.060 10 C 0.025 3.975 11 N -0.386 5.386 12 C 0.408 3.592 13 O -0.446 6.446 14 N -0.304 5.304 15 C 0.071 3.929 16 C -0.281 4.281 17 C -0.084 4.084 18 N -0.164 5.164 19 C 0.033 3.967 20 C 0.297 3.703 21 O -0.365 6.365 22 O -0.331 6.331 23 N -0.140 5.140 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.245 0.755 31 H 0.196 0.804 32 H 0.196 0.804 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 26.638 -14.812 0.471 30.483 hybrid contribution 0.484 1.652 -0.601 1.823 sum 27.122 -13.160 -0.130 30.146 Atomic orbital electron populations 1.69901 1.06281 1.27058 1.50387 1.24998 0.94770 0.99149 0.94382 0.86749 0.80259 0.83543 0.78498 1.20242 1.21304 1.19069 1.20897 0.88536 0.94939 1.51685 0.90512 1.19816 0.98003 0.91280 0.96946 1.21481 0.73922 1.00172 1.01876 1.45520 1.09165 1.05897 1.78029 1.15788 0.79944 0.85331 0.78161 1.90832 1.67063 1.29975 1.56725 1.41773 1.05320 1.06175 1.77106 1.18893 0.89581 0.86921 0.97515 1.22000 1.01973 0.89322 1.14815 1.22592 0.84298 0.99198 1.02269 1.47458 1.04116 1.03679 1.61108 1.20802 0.80083 0.99119 0.96662 1.23480 0.80566 0.79854 0.86373 1.90848 1.69666 1.30693 1.45274 1.84464 1.27319 1.68279 1.53071 1.77426 1.12298 0.93380 1.30895 0.92544 0.95908 0.96350 0.91761 0.91720 0.77174 0.75481 0.80403 0.80371 0.85689 0.84350 0.72498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 7 C -0.52 -14.48 9.66 -34.44 -0.33 -14.82 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 10 C 0.15 2.96 5.61 -4.04 -0.02 2.93 16 11 N -0.73 -11.98 5.56 -65.22 -0.36 -12.34 16 12 C 0.71 12.02 8.53 -86.92 -0.74 11.28 16 13 O -0.57 -11.36 13.47 5.28 0.07 -11.29 16 14 N -0.65 -9.36 5.46 -15.51 -0.08 -9.44 16 15 C 0.33 4.99 8.11 -154.36 -1.25 3.74 16 16 C -0.25 -3.55 9.61 -39.84 -0.38 -3.94 16 17 C 0.06 0.60 11.44 -17.24 -0.20 0.40 16 18 N -0.38 -4.01 3.40 -62.56 -0.21 -4.22 16 19 C 0.16 0.90 7.10 -5.19 -0.04 0.86 16 20 C 0.46 3.66 8.36 36.01 0.30 3.96 16 21 O -0.48 -6.29 16.46 -18.75 -0.31 -6.60 16 22 O -0.52 -2.49 13.42 -39.24 -0.53 -3.01 16 23 N -0.31 -4.44 11.66 31.44 0.37 -4.08 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 26 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.39 5.31 8.49 -40.82 -0.35 4.96 16 30 H 0.41 4.72 8.84 -40.82 -0.36 4.36 16 31 H 0.18 2.81 5.91 -52.48 -0.31 2.50 16 32 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.14 0.21 8.07 -51.93 -0.42 -0.21 16 35 H 0.42 0.59 9.10 45.56 0.41 1.01 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -38.44 313.61 -6.17 -44.61 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.07 Total: 6.13 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -2.88 Total: 5.66 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.48 Total: -56.54 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.76 Total: -20.90 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -38.44 -6.17 -44.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.114 kcal (2) G-P(sol) polarization free energy of solvation -38.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds