Wall clock time and date at job start Tue Mar 31 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48498 * 109.46812 * 269.99759 * 3 2 1 5 5 H 1.48502 * 109.47120 * 29.98964 * 3 2 1 6 6 H 1.48494 * 109.47357 * 149.99683 * 3 2 1 7 7 C 1.37876 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00515 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.40194 * 119.99945 * 180.27819 * 14 12 11 16 16 C 1.40400 * 125.97290 * 359.43673 * 15 14 12 17 17 C 1.35239 * 107.86865 * 179.88873 * 16 15 14 18 18 N 1.34968 * 107.85948 * 0.37291 * 17 16 15 19 19 C 1.46493 * 125.97615 * 179.73033 * 18 17 16 20 20 C 1.50710 * 109.47191 * 125.01636 * 19 18 17 21 21 O 1.20825 * 119.99621 * 359.97438 * 20 19 18 22 22 O 1.34224 * 120.00043 * 179.97438 * 20 19 18 23 23 N 1.31208 * 125.97117 * 179.74638 * 15 14 12 24 24 H 0.96999 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 26 26 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 27 27 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 28 28 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 29 29 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 30 30 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 31 31 H 1.08006 * 126.06392 * 0.02562 * 16 15 14 32 32 H 1.08007 * 126.07507 * 180.11544 * 17 16 15 33 33 H 1.08998 * 109.47186 * 245.01344 * 19 18 17 34 34 H 1.08999 * 109.47486 * 5.01412 * 19 18 17 35 35 H 0.96706 * 117.00044 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4866 -2.6365 0.0009 12 6 6.1605 -3.8037 0.0014 13 8 5.5526 -4.8567 0.0013 14 7 7.5083 -3.8037 0.0018 15 6 8.2092 -5.0178 -0.0036 16 6 7.6376 -6.3001 0.0013 17 6 8.6443 -7.2032 -0.0092 18 7 9.8102 -6.5234 -0.0121 19 6 11.1508 -7.1140 -0.0172 20 6 11.9355 -6.5689 -1.1827 21 8 11.4269 -5.7694 -1.9323 22 8 13.1994 -6.9716 -1.3879 23 7 9.5142 -5.1542 -0.0085 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6585 -3.1503 -0.8892 28 1 3.6580 -3.1505 0.8909 29 1 5.9716 -1.7965 0.0006 30 1 7.9932 -2.9636 0.0015 31 1 6.5814 -6.5254 0.0096 32 1 8.5347 -8.2777 -0.0105 33 1 11.6613 -6.8646 0.9130 34 1 11.0703 -8.1972 -0.1082 35 1 13.6626 -6.5939 -2.1481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:31 Heat of formation + Delta-G solvation = -57.107511 kcal Electronic energy + Delta-G solvation = -20825.007479 eV Core-core repulsion = 17245.490464 eV Total energy + Delta-G solvation = -3579.517015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.47268 -41.26604 -40.74006 -37.19723 -36.87743 -35.99373 -34.83617 -33.66031 -31.86196 -31.04939 -28.53110 -26.77115 -23.70016 -23.16432 -22.55204 -21.78898 -21.32632 -19.34589 -19.15924 -18.84438 -18.33352 -17.87938 -17.29147 -16.89349 -16.71785 -16.30345 -15.85233 -15.66633 -15.41851 -15.05114 -14.61616 -14.46409 -14.03784 -13.91681 -13.58308 -13.33389 -13.06171 -12.58328 -12.25608 -12.15218 -12.06800 -11.79349 -11.74501 -11.59050 -11.49065 -11.16549 -10.76895 -10.18181 -9.82534 -9.22630 -8.27897 -6.34661 0.73098 0.96961 1.14095 1.41001 1.43075 1.54219 1.58328 1.72641 2.18688 2.33899 2.38474 3.07312 3.15731 3.70822 3.96851 4.20984 4.22001 4.33520 4.42794 4.47794 4.61442 4.78462 4.86412 5.05519 5.19615 5.43621 5.45656 5.57314 5.66136 5.68804 5.83879 6.06742 6.24763 6.57391 6.73221 6.92891 7.02427 7.29432 7.41629 8.88708 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.043660 B = 0.002613 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.160173 B =10714.922293 C =11184.778064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.536 4.536 8 H 0.032 0.968 9 C -0.014 4.014 10 C 0.165 3.835 11 N -0.721 5.721 12 C 0.710 3.290 13 O -0.603 6.603 14 N -0.640 5.640 15 C 0.302 3.698 16 C -0.299 4.299 17 C 0.092 3.908 18 N -0.371 5.371 19 C 0.146 3.854 20 C 0.465 3.535 21 O -0.542 6.542 22 O -0.505 6.505 23 N -0.335 5.335 24 H 0.267 0.733 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.412 0.588 30 H 0.422 0.578 31 H 0.154 0.846 32 H 0.232 0.768 33 H 0.153 0.847 34 H 0.192 0.808 35 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.327 -15.045 0.763 33.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.160 1.160 7 C -0.575 4.575 8 H 0.050 0.950 9 C -0.052 4.052 10 C 0.041 3.959 11 N -0.377 5.377 12 C 0.409 3.591 13 O -0.481 6.481 14 N -0.293 5.293 15 C 0.045 3.955 16 C -0.329 4.329 17 C -0.052 4.052 18 N -0.156 5.156 19 C 0.025 3.975 20 C 0.307 3.693 21 O -0.431 6.431 22 O -0.319 6.319 23 N -0.164 5.164 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.249 0.751 30 H 0.260 0.740 31 H 0.172 0.828 32 H 0.248 0.752 33 H 0.170 0.830 34 H 0.209 0.791 35 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 30.466 -15.257 0.885 34.084 hybrid contribution -0.542 1.566 -0.736 1.813 sum 29.924 -13.691 0.150 32.908 Atomic orbital electron populations 1.70072 1.08521 1.28357 1.52084 1.26057 0.95680 1.03787 0.93815 0.85556 0.79704 0.77501 0.79209 1.19199 1.21372 1.15952 1.21236 0.91462 0.93452 1.51308 0.94962 1.19671 0.94446 0.92870 0.98183 1.20989 0.76011 0.98468 1.00454 1.45101 1.07664 1.06771 1.78136 1.15800 0.80715 0.84740 0.77854 1.90827 1.68083 1.31176 1.58047 1.41473 1.04307 1.07049 1.76431 1.19145 0.90185 0.87182 0.99022 1.21949 1.02024 0.90265 1.18676 1.23209 0.82939 1.00839 0.98211 1.47852 1.06124 1.02546 1.59110 1.21485 0.77685 1.01542 0.96763 1.23879 0.81003 0.78501 0.85932 1.90846 1.71024 1.33578 1.47619 1.84436 1.26024 1.67672 1.53751 1.77331 1.11665 0.96142 1.31299 0.92379 0.94342 0.94637 0.93432 0.93228 0.75125 0.74030 0.82834 0.75175 0.82962 0.79105 0.70746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.96 42.50 27.47 68.60 1.88 44.38 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 7 C -0.54 -30.45 9.66 25.60 0.25 -30.21 16 8 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 9 C -0.01 -0.61 4.16 29.85 0.12 -0.49 16 10 C 0.16 6.67 5.61 86.38 0.48 7.16 16 11 N -0.72 -23.21 5.56 -478.52 -2.66 -25.87 16 12 C 0.71 24.36 8.53 179.05 1.53 25.88 16 13 O -0.60 -24.94 13.47 -4.01 -0.05 -25.00 16 14 N -0.64 -18.39 5.46 -321.23 -1.75 -20.14 16 15 C 0.30 9.12 8.11 133.31 1.08 10.20 16 16 C -0.30 -8.43 9.61 22.10 0.21 -8.22 16 17 C 0.09 1.62 11.44 83.52 0.96 2.58 16 18 N -0.37 -6.85 3.40 -351.84 -1.20 -8.05 16 19 C 0.15 1.06 7.10 85.64 0.61 1.66 16 20 C 0.47 6.18 8.36 71.24 0.60 6.78 16 21 O -0.54 -13.63 16.46 21.97 0.36 -13.27 16 22 O -0.51 -3.27 13.42 -51.36 -0.69 -3.96 16 23 N -0.33 -9.23 11.66 -54.44 -0.63 -9.86 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 26 H 0.04 1.46 7.57 -2.38 -0.02 1.44 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.41 10.33 8.49 -92.71 -0.79 9.54 16 30 H 0.42 9.49 8.84 -92.71 -0.82 8.67 16 31 H 0.15 5.08 5.91 -2.91 -0.02 5.07 16 32 H 0.23 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.19 -0.62 8.07 -2.39 -0.02 -0.64 16 35 H 0.43 0.17 9.10 -74.05 -0.67 -0.50 16 Total: -1.00 -89.01 313.61 0.69 -88.32 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -1.16 Total: 16.42 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 6.30 Total: 16.02 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -5.94 Total: -122.92 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.38 Total: -42.22 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.38 kcal Total: -89.01 0.69 -88.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.212 kcal (2) G-P(sol) polarization free energy of solvation -89.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds