Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99844 * 2 1 4 4 H 1.48501 * 109.47086 * 264.79520 * 3 2 1 5 5 H 1.48496 * 109.47161 * 24.79282 * 3 2 1 6 6 H 1.48505 * 109.46862 * 144.79480 * 3 2 1 7 7 C 1.37877 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99690 * 3.19665 * 7 2 1 9 9 C 1.50696 * 120.00384 * 183.19907 * 7 2 1 10 10 O 1.42897 * 110.64478 * 61.95795 * 9 7 2 11 11 C 1.54596 * 110.72396 * 185.11344 * 9 7 2 12 12 C 1.53999 * 105.13772 * 140.49341 * 11 9 7 13 13 N 1.47896 * 107.05843 * 1.22547 * 12 11 9 14 14 C 1.46900 * 111.00036 * 214.15399 * 13 12 11 15 15 C 1.50706 * 109.46748 * 69.87237 * 14 13 12 16 16 C 1.35306 * 126.66075 * 89.71582 * 15 14 13 17 17 C 1.42301 * 103.92166 * 179.97438 * 16 15 14 18 18 C 1.48242 * 126.94299 * 180.11699 * 17 16 15 19 19 O 1.21406 * 120.00269 * 0.23711 * 18 17 16 20 20 O 1.34649 * 119.99843 * 180.23585 * 18 17 16 21 21 N 1.31009 * 106.11120 * 0.33581 * 17 16 15 22 22 O 1.20908 * 111.43737 * 359.78204 * 21 17 16 23 23 C 1.48537 * 105.82249 * 334.66853 * 13 12 11 24 24 H 0.96998 * 119.99650 * 0.02562 * 1 2 3 25 25 H 0.96710 * 114.00103 * 61.70163 * 10 9 7 26 26 H 1.08994 * 110.30734 * 21.57754 * 11 9 7 27 27 H 1.09003 * 110.38865 * 259.45013 * 11 9 7 28 28 H 1.08996 * 109.91693 * 241.86957 * 12 11 9 29 29 H 1.09006 * 109.91322 * 120.57787 * 12 11 9 30 30 H 1.09001 * 109.47795 * 189.86985 * 14 13 12 31 31 H 1.09003 * 109.46978 * 309.87754 * 14 13 12 32 32 H 1.08002 * 128.03881 * 359.97438 * 16 15 14 33 33 H 0.96694 * 116.99873 * 180.02562 * 20 18 17 34 34 H 1.08999 * 110.66990 * 157.64409 * 23 13 12 35 35 H 1.08999 * 110.66426 * 280.77764 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6066 1.9830 -1.3943 5 1 1.3959 2.6820 0.5871 6 1 3.4874 1.4745 0.8072 7 6 2.0046 -1.1940 -0.0005 8 1 1.4659 -2.1286 -0.0531 9 6 3.5098 -1.1951 0.0723 10 8 3.9556 -0.6005 1.2928 11 6 4.0634 -2.6314 -0.0708 12 6 5.3224 -2.4917 -0.9466 13 7 5.4821 -1.0532 -1.2505 14 6 6.0412 -0.8580 -2.5949 15 6 5.0143 -1.2464 -3.6272 16 6 4.0841 -0.4377 -4.1855 17 6 3.3826 -1.2911 -5.0825 18 6 2.2506 -0.9191 -5.9644 19 8 1.8345 0.2214 -5.9698 20 8 1.6838 -1.8463 -6.7595 21 7 3.9363 -2.4729 -4.9681 22 8 4.8407 -2.4613 -4.1657 23 6 4.1221 -0.4644 -1.1491 24 1 -0.4849 0.8401 -0.0004 25 1 3.6632 -1.0675 2.0876 26 1 3.3306 -3.2721 -0.5611 27 1 4.3256 -3.0364 0.9067 28 1 5.1957 -3.0548 -1.8713 29 1 6.1947 -2.8556 -0.4036 30 1 6.3116 0.1896 -2.7275 31 1 6.9285 -1.4801 -2.7131 32 1 3.9136 0.6115 -3.9945 33 1 0.9489 -1.5564 -7.3171 34 1 4.1801 0.6086 -0.9662 35 1 3.5451 -0.6716 -2.0503 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = -48.769020 kcal Electronic energy + Delta-G solvation = -23172.715568 eV Core-core repulsion = 19561.267386 eV Total energy + Delta-G solvation = -3611.448182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.18841 -40.13282 -38.97173 -36.30107 -35.49990 -34.12240 -32.51831 -32.36351 -29.97689 -28.48843 -26.23341 -25.81960 -23.92421 -22.91567 -21.31218 -20.42583 -19.66736 -18.05569 -18.03031 -17.56315 -17.22772 -16.56427 -15.69212 -15.57426 -15.13512 -14.75822 -14.29091 -13.96106 -13.77505 -13.51044 -13.40328 -12.85335 -12.57312 -12.04667 -11.92780 -11.80513 -11.56985 -11.36225 -11.23577 -11.06248 -10.76726 -10.55597 -10.49983 -10.16308 -9.98481 -9.48221 -8.98953 -8.70418 -8.44580 -8.21389 -6.20982 -4.32726 0.89210 1.52684 2.50382 2.81045 2.94785 3.28333 3.41753 3.62968 3.95468 4.30101 4.43493 4.63244 4.84202 5.01657 5.10016 5.23061 5.31322 5.33125 5.51843 5.60365 5.64827 5.81775 5.83829 6.11343 6.15287 6.20005 6.41431 6.53745 6.74752 6.93471 7.16425 7.25380 7.56285 7.60507 7.95952 8.22065 8.76144 8.98784 9.43179 10.89675 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.007866 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.751915 B = 3558.746575 C = 4567.159094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.088 3.912 3 Si 0.868 3.132 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.222 1.222 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.225 3.775 10 O -0.567 6.567 11 C -0.146 4.146 12 C 0.033 3.967 13 N -0.496 5.496 14 C 0.120 3.880 15 C -0.056 4.056 16 C -0.165 4.165 17 C -0.015 4.015 18 C 0.573 3.427 19 O -0.490 6.490 20 O -0.500 6.500 21 N -0.308 5.308 22 O 0.135 5.865 23 C 0.031 3.969 24 H 0.266 0.734 25 H 0.361 0.639 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.184 0.816 33 H 0.419 0.581 34 H 0.077 0.923 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.612 -2.818 -8.652 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.117 4.117 3 Si 0.695 3.305 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.145 1.145 7 C -0.592 4.592 8 H 0.093 0.907 9 C 0.185 3.815 10 O -0.373 6.373 11 C -0.184 4.184 12 C -0.094 4.094 13 N -0.218 5.218 14 C -0.010 4.010 15 C -0.121 4.121 16 C -0.188 4.188 17 C -0.171 4.171 18 C 0.414 3.586 19 O -0.375 6.375 20 O -0.311 6.311 21 N -0.006 5.006 22 O 0.054 5.946 23 C -0.096 4.096 24 H 0.076 0.924 25 H 0.207 0.793 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.201 0.799 33 H 0.278 0.722 34 H 0.096 0.904 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.999 -3.017 -9.090 14.584 hybrid contribution -1.319 1.066 -0.529 1.776 sum 9.680 -1.951 -9.618 13.785 Atomic orbital electron populations 1.69926 1.06696 1.27596 1.48140 1.24993 0.94595 0.99695 0.92450 0.87186 0.82126 0.82279 0.78864 1.21024 1.22594 1.14488 1.21343 0.88772 0.94905 1.54190 0.90656 1.19792 0.92650 0.86787 0.82289 1.86522 1.78447 1.56731 1.15610 1.23033 0.95621 1.00432 0.99361 1.22937 0.99306 0.88217 0.98979 1.65240 1.24210 1.12630 1.19759 1.21411 0.93434 1.03331 0.82845 1.25826 1.02670 0.83765 0.99803 1.22502 0.96000 1.02913 0.97398 1.22137 1.00571 0.91537 1.02862 1.19136 0.79981 0.82346 0.77144 1.90942 1.60961 1.20710 1.64885 1.84586 1.50178 1.43173 1.53153 1.74265 0.99820 1.20536 1.05965 1.84838 1.38399 1.31559 1.39766 1.23909 0.86434 0.99814 0.99426 0.92388 0.79264 0.91248 0.91641 0.93833 0.90508 0.86927 0.88131 0.79881 0.72187 0.90449 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 2 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 3 Si 0.87 21.57 23.87 -169.99 -4.06 17.51 16 4 H -0.28 -6.83 7.06 56.52 0.40 -6.43 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.22 -5.39 5.52 56.52 0.31 -5.08 16 7 C -0.55 -15.03 8.83 -34.44 -0.30 -15.33 16 8 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 9 C 0.23 5.04 0.78 -89.91 -0.07 4.97 16 10 O -0.57 -12.54 10.46 -35.23 -0.37 -12.91 16 11 C -0.15 -2.76 6.25 -25.37 -0.16 -2.92 16 12 C 0.03 0.53 6.46 -2.75 -0.02 0.51 16 13 N -0.50 -8.28 5.54 -231.88 -1.28 -9.56 16 14 C 0.12 1.51 6.05 -4.97 -0.03 1.48 16 15 C -0.06 -0.81 5.01 -35.35 -0.18 -0.98 16 16 C -0.16 -2.61 8.99 -39.07 -0.35 -2.96 16 17 C -0.02 -0.25 7.24 -82.55 -0.60 -0.85 16 18 C 0.57 9.17 8.36 34.84 0.29 9.46 16 19 O -0.49 -8.82 17.74 -19.19 -0.34 -9.17 16 20 O -0.50 -6.30 13.44 -40.35 -0.54 -6.84 16 21 N -0.31 -5.09 12.12 33.29 0.40 -4.69 16 22 O 0.13 2.04 10.25 17.25 0.18 2.22 16 23 C 0.03 0.63 4.04 -1.89 -0.01 0.63 16 24 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.36 6.92 9.09 45.56 0.41 7.34 16 26 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 27 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 28 H 0.04 0.66 6.31 -51.93 -0.33 0.33 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.18 2.78 8.06 -52.49 -0.42 2.36 16 33 H 0.42 2.93 9.11 45.56 0.42 3.34 16 34 H 0.08 1.69 4.81 -51.93 -0.25 1.44 16 35 H 0.07 1.44 4.83 -51.93 -0.25 1.19 16 LS Contribution 293.02 15.07 4.42 4.42 Total: -1.00 -34.07 293.02 -4.49 -38.56 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -2.14 Total: 10.11 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.52 Total: -3.59 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -0.11 Total: -40.31 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.07 Total: -26.70 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.06 Total: 17.51 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.07 -4.49 -38.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.207 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds