Wall clock time and date at job start Tue Mar 31 2020 05:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48503 * 109.47044 * 239.99988 * 3 2 1 5 5 H 1.48499 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47330 * 120.00082 * 3 2 1 7 7 C 1.37878 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99984 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.87808 * 62.39347 * 9 7 2 11 11 C 1.55140 * 110.99244 * 298.54429 * 9 7 2 12 12 C 1.54311 * 103.02352 * 206.25563 * 11 9 7 13 13 N 1.47449 * 107.23220 * 22.28584 * 12 11 9 14 14 C 1.46899 * 110.99925 * 123.25698 * 13 12 11 15 15 C 1.50703 * 109.47107 * 69.87541 * 14 13 12 16 16 C 1.35308 * 126.66382 * 89.99956 * 15 14 13 17 17 C 1.42296 * 103.92241 * 179.97438 * 16 15 14 18 18 C 1.48236 * 126.94391 * 179.97438 * 17 16 15 19 19 O 1.21413 * 120.00034 * 0.02562 * 18 17 16 20 20 O 1.34645 * 120.00260 * 180.02562 * 18 17 16 21 21 N 1.31020 * 106.11251 * 0.02562 * 17 16 15 22 22 O 1.20908 * 111.43182 * 359.73611 * 21 17 16 23 23 C 1.47840 * 108.56439 * 0.98907 * 13 12 11 24 24 H 0.96995 * 120.00342 * 0.02562 * 1 2 3 25 25 H 0.96701 * 114.00056 * 297.61118 * 10 9 7 26 26 H 1.09003 * 110.70397 * 87.86832 * 11 9 7 27 27 H 1.09003 * 110.85517 * 324.71271 * 11 9 7 28 28 H 1.08997 * 109.89165 * 262.88043 * 12 11 9 29 29 H 1.09000 * 109.88867 * 141.68736 * 12 11 9 30 30 H 1.09002 * 109.47043 * 189.87520 * 14 13 12 31 31 H 1.09001 * 109.47354 * 309.87582 * 14 13 12 32 32 H 1.08000 * 128.03507 * 359.96010 * 16 15 14 33 33 H 0.96704 * 117.00710 * 180.02562 * 20 18 17 34 34 H 1.09005 * 110.37490 * 94.73667 * 23 13 12 35 35 H 1.09002 * 110.37399 * 217.07287 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4602 -2.6305 -1.1834 11 6 0.3743 -2.6347 1.2721 12 6 0.2542 -4.1627 1.4505 13 7 1.3924 -4.7761 0.7417 14 6 2.1867 -5.6155 1.6485 15 6 1.3961 -6.8444 2.0172 16 6 1.3908 -8.0283 1.3621 17 6 0.4907 -8.8325 2.1157 18 6 0.1077 -10.2379 1.8408 19 8 0.5791 -10.8197 0.8851 20 8 -0.7630 -10.8692 2.6509 21 7 0.0680 -8.0795 3.1011 22 8 0.5656 -6.9783 3.0603 23 6 2.2187 -3.6985 0.1571 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2255 -1.9548 -1.2752 26 1 -0.6068 -2.1868 1.1137 27 1 0.8677 -2.1837 2.1332 28 1 -0.6835 -4.5138 1.0199 29 1 0.2965 -4.4169 2.5096 30 1 3.1105 -5.9131 1.1524 31 1 2.4242 -5.0520 2.5508 32 1 1.9416 -8.2997 0.4737 33 1 -0.9820 -11.7852 2.4315 34 1 3.0368 -3.4403 0.8296 35 1 2.6071 -4.0030 -0.8148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182226.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:34 Heat of formation + Delta-G solvation = -64.630107 kcal Electronic energy + Delta-G solvation = -21954.381809 eV Core-core repulsion = 18342.245839 eV Total energy + Delta-G solvation = -3612.135970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.23314 -40.33434 -38.56730 -36.50155 -35.18481 -34.19831 -32.56938 -32.17871 -29.58325 -28.21203 -26.18546 -25.80216 -24.10557 -22.98232 -21.07840 -20.19130 -19.67728 -18.24108 -17.95657 -17.56901 -16.95365 -16.67034 -15.85704 -15.42168 -14.93180 -14.74646 -14.42472 -13.96953 -13.74311 -13.62919 -12.93031 -12.63578 -12.19655 -12.00871 -11.83790 -11.65438 -11.31637 -11.28693 -11.26312 -11.09129 -10.82217 -10.73284 -10.49746 -10.39295 -9.93302 -9.65272 -9.24950 -8.64636 -8.14776 -7.85635 -6.25626 -4.34530 0.74513 1.47811 2.34892 2.63942 2.86912 3.20694 3.26440 3.28697 3.84604 4.24848 4.50811 4.57096 4.78678 5.01715 5.07495 5.21612 5.47459 5.52734 5.60739 5.76691 5.83985 5.97376 5.99731 6.06160 6.36736 6.55183 6.76510 6.97735 7.30960 7.40576 7.41750 7.45549 7.49531 7.76521 7.86736 8.08804 8.67508 9.34296 9.46194 10.81272 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.045469 B = 0.003384 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.660496 B = 8272.166156 C = 8318.436410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.253 3.747 10 O -0.579 6.579 11 C -0.144 4.144 12 C 0.038 3.962 13 N -0.524 5.524 14 C 0.123 3.877 15 C -0.001 4.001 16 C -0.167 4.167 17 C -0.023 4.023 18 C 0.575 3.425 19 O -0.495 6.495 20 O -0.500 6.500 21 N -0.310 5.310 22 O 0.133 5.867 23 C 0.059 3.941 24 H 0.268 0.732 25 H 0.378 0.622 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.185 0.815 33 H 0.419 0.581 34 H 0.053 0.947 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -13.925 5.599 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.212 3.788 10 O -0.387 6.387 11 C -0.183 4.183 12 C -0.089 4.089 13 N -0.249 5.249 14 C -0.006 4.006 15 C -0.064 4.064 16 C -0.190 4.190 17 C -0.179 4.179 18 C 0.416 3.584 19 O -0.380 6.380 20 O -0.311 6.311 21 N -0.008 5.008 22 O 0.052 5.948 23 C -0.067 4.067 24 H 0.078 0.922 25 H 0.227 0.773 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.202 0.798 33 H 0.278 0.722 34 H 0.071 0.929 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.962 -14.723 5.941 15.906 hybrid contribution 0.560 1.178 0.008 1.304 sum 1.522 -13.545 5.949 14.872 Atomic orbital electron populations 1.69717 1.05955 1.27615 1.49961 1.24994 0.94979 0.99442 0.93596 0.86530 0.79584 0.82376 0.78769 1.20036 1.21161 1.20155 1.21479 0.93507 0.90596 1.52147 0.92056 1.19508 0.86810 0.90438 0.82014 1.86141 1.51376 1.56741 1.44413 1.23267 1.02905 0.91455 1.00644 1.22950 0.93996 0.96639 0.95340 1.63707 1.08972 1.22054 1.30166 1.20834 0.94011 0.88571 0.97162 1.24595 0.95018 0.98526 0.88242 1.22329 1.02256 0.91463 1.02975 1.22162 1.03391 0.94687 0.97660 1.19180 0.75632 0.84379 0.79223 1.90931 1.52534 1.66080 1.28487 1.84609 1.58801 1.33028 1.54653 1.74333 1.14826 0.91976 1.19693 1.84831 1.43603 1.25590 1.40732 1.23045 0.95194 0.89920 0.98531 0.92246 0.77288 0.90269 0.92349 0.91521 0.93942 0.87273 0.91877 0.79753 0.72182 0.92884 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.10 10.75 55.43 0.60 -22.50 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.72 8.27 -34.44 -0.28 -14.01 16 8 H 0.06 1.54 7.79 -52.48 -0.41 1.13 16 9 C 0.25 5.91 0.87 -89.64 -0.08 5.83 16 10 O -0.58 -14.56 13.16 -35.23 -0.46 -15.02 16 11 C -0.14 -3.12 5.37 -24.91 -0.13 -3.25 16 12 C 0.04 0.70 6.41 -2.84 -0.02 0.68 16 13 N -0.52 -9.11 5.15 -232.69 -1.20 -10.31 16 14 C 0.12 1.62 5.11 -4.98 -0.03 1.60 16 15 C 0.00 -0.01 6.36 -35.35 -0.22 -0.23 16 16 C -0.17 -2.14 10.92 -39.07 -0.43 -2.57 16 17 C -0.02 -0.32 7.24 -82.55 -0.60 -0.91 16 18 C 0.57 7.16 8.36 34.84 0.29 7.45 16 19 O -0.49 -6.96 17.74 -19.20 -0.34 -7.31 16 20 O -0.50 -4.78 13.44 -40.34 -0.54 -5.32 16 21 N -0.31 -4.53 12.12 33.29 0.40 -4.12 16 22 O 0.13 1.88 10.89 17.25 0.19 2.07 16 23 C 0.06 1.16 5.86 -2.30 -0.01 1.15 16 24 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 25 H 0.38 9.63 7.56 45.56 0.34 9.97 16 26 H 0.08 1.86 7.54 -51.93 -0.39 1.47 16 27 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.04 0.70 7.05 -51.93 -0.37 0.33 16 30 H 0.11 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.78 7.96 -51.93 -0.41 0.36 16 32 H 0.19 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.42 1.65 9.11 45.56 0.42 2.06 16 34 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 307.62 15.07 4.64 4.64 Total: -1.00 -29.51 307.62 -5.81 -35.32 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -2.46 Total: 10.13 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.61 Total: -2.50 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.20 Total: -36.93 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -1.16 Total: -25.59 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.51 -5.81 -35.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182226.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.313 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds