Wall clock time and date at job start Tue Mar 31 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46861 * 2 1 4 4 C 1.50698 * 109.46858 * 180.02562 * 3 2 1 5 5 N 1.29939 * 125.37105 * 90.34834 * 4 3 2 6 6 C 1.36074 * 108.48659 * 180.16036 * 5 4 3 7 7 C 1.47319 * 126.45880 * 179.82325 * 6 5 4 8 8 O 1.21645 * 120.00316 * 184.03181 * 7 6 5 9 9 N 1.34776 * 119.99750 * 4.02469 * 7 6 5 10 10 C 1.36948 * 120.00317 * 4.36418 * 9 7 6 11 11 H 1.07997 * 119.99276 * 327.58541 * 10 9 7 12 12 C 1.38983 * 120.00470 * 147.58621 * 10 9 7 13 13 N 1.31408 * 120.00105 * 352.69462 * 12 10 9 14 14 Si 1.86802 * 120.00190 * 172.69566 * 12 10 9 15 15 H 1.48500 * 109.46917 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46838 * 119.99878 * 14 12 10 17 17 H 1.48500 * 109.47181 * 239.99940 * 14 12 10 18 18 C 1.46505 * 120.00094 * 184.63082 * 9 7 6 19 19 C 1.50698 * 109.47283 * 276.33277 * 18 9 7 20 20 O 1.20822 * 120.00118 * 0.02562 * 19 18 9 21 21 O 1.34228 * 119.99589 * 179.97438 * 19 18 9 22 22 C 1.36189 * 107.08545 * 359.56941 * 6 5 4 23 23 O 1.34056 * 125.36932 * 270.02361 * 4 3 2 24 24 H 1.08997 * 109.46866 * 299.99741 * 1 2 3 25 25 H 1.08996 * 109.47071 * 59.99483 * 1 2 3 26 26 H 1.09000 * 109.46845 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46866 * 240.00259 * 2 1 3 28 28 H 1.08992 * 109.47235 * 120.00028 * 2 1 3 29 29 H 1.09005 * 109.46927 * 60.00268 * 3 2 1 30 30 H 1.08992 * 109.47218 * 300.00038 * 3 2 1 31 31 H 0.97000 * 120.00504 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.46523 * 36.33541 * 18 9 7 33 33 H 1.09003 * 109.47062 * 156.32912 * 18 9 7 34 34 H 0.96701 * 116.99548 * 179.97438 * 21 19 18 35 35 H 1.07998 * 126.53061 * 180.29475 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2988 1.4491 -1.0605 6 6 5.6010 1.4431 -0.6659 7 6 6.7824 1.4436 -1.5459 8 8 7.8978 1.3637 -1.0669 9 7 6.6276 1.5326 -2.8818 10 6 5.3795 1.7123 -3.4160 11 1 4.5163 1.2858 -2.9268 12 6 5.2236 2.4435 -4.5876 13 7 6.2490 3.0822 -5.1048 14 14 3.5566 2.5186 -5.4271 15 1 2.5745 1.7208 -4.6496 16 1 3.1013 3.9303 -5.4982 17 1 3.6685 1.9648 -6.8004 18 6 7.7937 1.4311 -3.7628 19 6 8.4630 2.7773 -3.8672 20 8 8.0125 3.7242 -3.2670 21 8 9.5602 2.9241 -4.6264 22 6 5.6064 1.4422 0.6960 23 8 4.3235 1.4419 1.0922 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 6.1404 3.5922 -5.9227 32 1 8.4970 0.7065 -3.3525 33 1 7.4738 1.1065 -4.7530 34 1 9.9541 3.8065 -4.6626 35 1 6.4767 1.4423 1.3355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609985242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:56 Heat of formation + Delta-G solvation = -91.603739 kcal Electronic energy + Delta-G solvation = -22690.463964 eV Core-core repulsion = 19077.158330 eV Total energy + Delta-G solvation = -3613.305635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.76284 -39.19302 -37.90587 -35.31791 -35.06562 -34.43894 -33.97001 -31.48849 -30.25473 -27.97017 -26.79631 -24.87838 -23.01741 -22.11861 -21.03918 -20.25623 -19.30996 -17.90195 -16.85635 -16.20347 -16.06407 -15.89995 -15.46795 -15.06717 -14.67429 -14.31228 -14.24270 -14.17166 -13.34117 -13.22562 -13.11196 -12.63144 -12.14421 -11.82082 -11.77119 -11.49541 -11.38236 -11.36982 -11.07484 -10.93642 -10.76359 -10.48015 -10.34841 -10.10873 -9.63803 -9.21440 -9.04165 -8.79711 -8.36807 -7.72762 -6.38429 -3.95520 1.77951 2.74999 3.11253 3.19027 3.24811 3.31078 3.80796 3.91133 4.24332 4.30128 4.53146 4.69618 4.95316 4.96660 5.13801 5.23257 5.41608 5.63214 5.65208 5.72628 5.87286 5.94136 6.09283 6.20493 6.22972 6.26486 6.32781 6.53564 6.67395 6.77750 7.64411 7.68477 7.77139 8.20932 8.54258 9.08363 9.29906 9.40155 9.76127 10.70523 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.006755 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.810442 B = 4144.012933 C = 5490.875457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.019 4.019 4 C 0.164 3.836 5 N -0.421 5.421 6 C -0.013 4.013 7 C 0.538 3.462 8 O -0.601 6.601 9 N -0.405 5.405 10 C -0.326 4.326 11 H 0.143 0.857 12 C 0.033 3.967 13 N -0.878 5.878 14 Si 0.931 3.069 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.159 3.841 19 C 0.499 3.501 20 O -0.499 6.499 21 O -0.539 6.539 22 C -0.033 4.033 23 O -0.208 6.208 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.269 0.731 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.390 0.610 35 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.855 -4.526 5.751 10.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.057 4.057 4 C -0.044 4.044 5 N -0.150 5.150 6 C -0.134 4.134 7 C 0.327 3.673 8 O -0.488 6.488 9 N -0.122 5.122 10 C -0.454 4.454 11 H 0.160 0.840 12 C -0.171 4.171 13 N -0.517 5.517 14 Si 0.758 3.242 15 H -0.188 1.188 16 H -0.210 1.210 17 H -0.209 1.209 18 C 0.034 3.966 19 C 0.339 3.661 20 O -0.383 6.383 21 O -0.350 6.350 22 C -0.106 4.106 23 O -0.095 6.095 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.246 0.754 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.840 -4.564 5.370 9.821 hybrid contribution -0.128 1.084 -0.054 1.092 sum -6.968 -3.481 5.316 9.430 Atomic orbital electron populations 1.21752 0.95031 1.01944 1.02036 1.21541 0.96071 0.95222 1.03220 1.20076 0.81714 0.99053 1.04845 1.26503 0.96300 1.02494 0.79122 1.71242 1.01193 1.15235 1.27375 1.21786 0.92067 1.07313 0.92209 1.16817 0.85637 0.82740 0.82064 1.90658 1.24502 1.58283 1.75323 1.43204 1.06869 1.59361 1.02719 1.20870 0.85026 1.31725 1.07813 0.84016 1.25515 0.98983 0.94403 0.98194 1.69660 1.30824 1.30231 1.20938 0.85779 0.81821 0.78033 0.78567 1.18752 1.20966 1.20882 1.20387 0.87990 0.90806 0.97462 1.23386 0.75947 0.92507 0.74253 1.90556 1.61807 1.41425 1.44560 1.84506 1.43714 1.38923 1.67897 1.25022 0.84248 1.05363 0.95986 1.84263 1.16847 1.70194 1.38165 0.92640 0.92276 0.92431 0.90768 0.91644 0.89436 0.87722 0.92058 0.90029 0.86624 0.75439 0.76203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.33 5.92 -26.72 -0.16 -1.49 16 3 C -0.02 -0.23 5.84 -27.88 -0.16 -0.40 16 4 C 0.16 2.85 7.56 -13.08 -0.10 2.75 16 5 N -0.42 -9.08 7.90 -7.66 -0.06 -9.14 16 6 C -0.01 -0.30 6.71 -83.03 -0.56 -0.86 16 7 C 0.54 13.99 7.39 -12.57 -0.09 13.90 16 8 O -0.60 -16.21 16.62 5.24 0.09 -16.13 16 9 N -0.41 -10.68 2.14 -117.35 -0.25 -10.93 16 10 C -0.33 -8.62 8.55 -14.99 -0.13 -8.74 16 11 H 0.14 3.67 4.97 -52.49 -0.26 3.41 16 12 C 0.03 0.86 5.12 -17.46 -0.09 0.77 16 13 N -0.88 -23.76 8.71 55.50 0.48 -23.28 16 14 Si 0.93 20.40 29.56 -169.99 -5.02 15.37 16 15 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 C 0.16 3.88 5.10 -5.19 -0.03 3.85 16 19 C 0.50 12.54 6.34 36.00 0.23 12.77 16 20 O -0.50 -14.41 16.06 -18.75 -0.30 -14.71 16 21 O -0.54 -11.11 13.42 -39.25 -0.53 -11.63 16 22 C -0.03 -0.62 11.95 30.00 0.36 -0.26 16 23 O -0.21 -3.57 10.73 6.46 0.07 -3.50 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.08 1.83 7.69 -51.93 -0.40 1.43 16 33 H 0.12 2.76 7.09 -51.93 -0.37 2.39 16 34 H 0.39 6.33 9.10 45.56 0.41 6.74 16 35 H 0.22 3.44 8.06 -52.49 -0.42 3.01 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -34.50 309.07 -4.36 -38.86 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.13 Total: 9.05 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: -0.36 Total: 21.37 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.17 Total: -43.35 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -0.67 Total: -45.97 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.50 -4.36 -38.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609985242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.744 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds