Wall clock time and date at job start Tue Mar 31 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.20825 * 119.99780 * 2 1 4 4 O 1.34272 * 119.99838 * 180.02562 * 2 1 3 5 5 C 1.35842 * 116.99925 * 182.89791 * 4 2 1 6 6 C 1.38946 * 119.91847 * 93.46931 * 5 4 2 7 7 C 1.37775 * 120.09585 * 180.02562 * 6 5 4 8 8 C 1.39684 * 119.90617 * 359.97438 * 7 6 5 9 9 C 1.47905 * 120.08508 * 180.02562 * 8 7 6 10 10 C 1.39988 * 119.88532 * 359.72272 * 9 8 7 11 11 C 1.36220 * 120.11806 * 179.71659 * 10 9 8 12 12 C 1.40953 * 119.87715 * 0.55887 * 11 10 9 13 13 C 1.40999 * 120.11150 * 179.69641 * 12 11 10 14 14 H 1.08002 * 119.99603 * 206.26819 * 13 12 11 15 15 C 1.39983 * 119.99720 * 26.26294 * 13 12 11 16 16 N 1.30807 * 120.00420 * 15.30714 * 15 13 12 17 17 Si 1.86804 * 119.99567 * 195.30105 * 15 13 12 18 18 H 1.48500 * 109.47271 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46780 * 120.00301 * 17 15 13 20 20 H 1.48500 * 109.47416 * 240.00185 * 17 15 13 21 21 C 1.40949 * 119.77198 * 359.71871 * 12 11 10 22 22 C 1.36218 * 119.88338 * 359.97438 * 21 12 11 23 23 C 1.39691 * 119.82843 * 0.26910 * 8 7 6 24 24 C 1.37777 * 119.90624 * 359.47745 * 23 8 7 25 25 H 1.08990 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46585 * 299.99714 * 1 2 3 27 27 H 1.08998 * 109.47103 * 59.99269 * 1 2 3 28 28 H 1.08005 * 119.95050 * 0.02562 * 6 5 4 29 29 H 1.08002 * 120.04347 * 179.97438 * 7 6 5 30 30 H 1.08007 * 119.93710 * 359.97438 * 10 9 8 31 31 H 1.07993 * 120.05821 * 180.27384 * 11 10 9 32 32 H 0.96998 * 120.00439 * 179.97438 * 16 15 13 33 33 H 1.08003 * 120.05477 * 180.02562 * 21 12 11 34 34 H 1.08004 * 119.93619 * 179.97438 * 22 21 12 35 35 H 1.08002 * 120.04616 * 179.69886 * 23 8 7 36 36 H 1.08001 * 119.95324 * 180.24874 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1784 -1.1628 -0.0005 5 6 3.5336 -1.0926 0.0607 6 6 4.1762 -1.1604 1.2908 7 6 5.5505 -1.0890 1.3572 8 6 6.2980 -0.9487 0.1855 9 6 7.7736 -0.8722 0.2521 10 6 8.4200 -0.9347 1.4923 11 6 9.7791 -0.8705 1.5587 12 6 10.5339 -0.7290 0.3767 13 6 11.9405 -0.6556 0.4403 14 1 12.4901 -0.1436 -0.3358 15 6 12.6246 -1.2462 1.5093 16 7 12.0142 -2.1095 2.2795 17 14 14.4093 -0.8017 1.8358 18 1 14.8643 0.1911 0.8294 19 1 14.5334 -0.2193 3.1963 20 1 15.2489 -2.0229 1.7417 21 6 9.8777 -0.6606 -0.8688 22 6 8.5185 -0.7321 -0.9247 23 6 5.6480 -0.8757 -1.0488 24 6 4.2737 -0.9532 -1.1071 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.5975 -1.2693 2.1962 29 1 6.0491 -1.1414 2.3138 30 1 7.8403 -1.0383 2.3977 31 1 10.2770 -0.9233 2.5155 32 1 12.4883 -2.5191 3.0200 33 1 10.4516 -0.5526 -1.7773 34 1 8.0148 -0.6794 -1.8786 35 1 6.2223 -0.7624 -1.9565 36 1 3.7706 -0.9009 -2.0613 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368570.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:07 Heat of formation + Delta-G solvation = -41.690768 kcal Electronic energy + Delta-G solvation = -20158.828806 eV Core-core repulsion = 16958.536823 eV Total energy + Delta-G solvation = -3200.291983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.05195 -38.75542 -37.45753 -36.41121 -33.94959 -31.43266 -30.91338 -30.37912 -29.47451 -28.29593 -25.26869 -22.98131 -22.84229 -21.22131 -20.43603 -19.91181 -18.15145 -17.51180 -16.86727 -16.38670 -16.06276 -15.37137 -14.65924 -14.56687 -13.98085 -13.43330 -13.36827 -13.14232 -13.09753 -13.02521 -12.64687 -12.47017 -12.17922 -12.00809 -11.68253 -11.54805 -11.25973 -11.05580 -10.85558 -10.59149 -10.53822 -10.38363 -9.82908 -9.48289 -9.37987 -8.65265 -8.59073 -7.70183 -7.11400 -6.94846 -4.51169 1.24908 1.77196 2.10239 2.58133 2.90548 2.96053 3.01435 3.02140 3.21270 3.76317 4.15271 4.60133 4.68494 4.96904 5.01308 5.18849 5.19697 5.40823 5.57623 5.57957 5.73232 5.86574 6.01519 6.10795 6.20804 6.41534 6.61993 6.67150 6.73870 6.79297 6.82417 6.91513 7.09752 7.26237 7.28067 7.45525 7.75293 7.87158 7.93188 7.99520 8.08525 8.42846 8.65047 8.77045 9.93336 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.051349 B = 0.002977 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.161879 B = 9402.353214 C = 9658.840586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.446 3.554 3 O -0.498 6.498 4 O -0.292 6.292 5 C 0.024 3.976 6 C -0.103 4.103 7 C -0.136 4.136 8 C 0.036 3.964 9 C -0.210 4.210 10 C -0.073 4.073 11 C -0.171 4.171 12 C 0.120 3.880 13 C -0.442 4.442 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.778 5.778 17 Si 0.914 3.086 18 H -0.258 1.258 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.230 4.230 22 C -0.060 4.060 23 C -0.137 4.137 24 C -0.102 4.102 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.285 0.715 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.009 0.476 -1.465 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.290 3.710 3 O -0.384 6.384 4 O -0.207 6.207 5 C -0.016 4.016 6 C -0.121 4.121 7 C -0.154 4.154 8 C 0.036 3.964 9 C -0.212 4.212 10 C -0.091 4.091 11 C -0.190 4.190 12 C 0.117 3.883 13 C -0.470 4.470 14 H 0.102 0.898 15 C -0.149 4.149 16 N -0.402 5.402 17 Si 0.737 3.263 18 H -0.182 1.182 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.249 4.249 22 C -0.078 4.078 23 C -0.155 4.155 24 C -0.121 4.121 25 H 0.110 0.890 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.137 0.863 29 H 0.146 0.854 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.743 0.630 -1.268 13.816 hybrid contribution 0.807 0.069 0.202 0.835 sum -12.936 0.699 -1.066 12.998 Atomic orbital electron populations 1.21566 0.86992 1.05721 1.05742 1.24331 0.92022 0.82098 0.72571 1.90723 1.70683 1.32797 1.44149 1.84625 1.18676 1.34138 1.83281 1.18331 0.79475 1.09955 0.93872 1.20956 0.95031 1.00298 0.95851 1.21069 0.92347 1.03235 0.98740 1.19131 0.93578 0.91669 0.92062 1.18050 0.89269 1.19768 0.94076 1.20551 0.94844 0.98650 0.95053 1.21022 0.92135 1.06860 0.98960 1.17779 0.93349 0.86322 0.90844 1.19780 0.92033 1.29048 1.06153 0.89845 1.26054 1.01402 0.92864 0.94544 1.69810 1.38768 1.18090 1.13493 0.86163 0.81016 0.79590 0.79496 1.18160 1.19445 1.19707 1.20715 0.93610 1.13718 0.96853 1.20417 0.94017 0.97688 0.95653 1.21051 0.92962 1.03484 0.98028 1.20982 0.94430 0.99805 0.96862 0.89027 0.87767 0.87818 0.86262 0.85382 0.88853 0.86184 0.90403 0.88580 0.88812 0.85514 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 10.42 36.01 0.38 -0.61 16 2 C 0.45 5.83 8.01 36.01 0.29 6.11 16 3 O -0.50 -8.55 16.84 -18.75 -0.32 -8.86 16 4 O -0.29 -4.24 10.01 -23.38 -0.23 -4.48 16 5 C 0.02 0.41 4.92 -39.05 -0.19 0.22 16 6 C -0.10 -1.72 9.97 -39.49 -0.39 -2.12 16 7 C -0.14 -2.46 9.42 -39.21 -0.37 -2.83 16 8 C 0.04 0.71 5.88 -104.86 -0.62 0.09 16 9 C -0.21 -4.67 5.90 -104.63 -0.62 -5.28 16 10 C -0.07 -1.66 9.36 -39.65 -0.37 -2.03 16 11 C -0.17 -4.27 8.61 -39.28 -0.34 -4.61 16 12 C 0.12 3.07 5.56 -106.80 -0.59 2.48 16 13 C -0.44 -11.10 9.03 -37.88 -0.34 -11.44 16 14 H 0.08 2.00 7.89 -52.49 -0.41 1.59 16 15 C 0.07 1.69 5.17 -17.33 -0.09 1.60 16 16 N -0.78 -19.02 10.91 55.55 0.61 -18.41 16 17 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 18 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 C -0.23 -5.44 9.73 -39.28 -0.38 -5.82 16 22 C -0.06 -1.31 9.36 -39.65 -0.37 -1.68 16 23 C -0.14 -2.47 9.42 -39.21 -0.37 -2.84 16 24 C -0.10 -1.72 9.97 -39.48 -0.39 -2.11 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 29 H 0.13 2.17 6.18 -52.49 -0.32 1.85 16 30 H 0.09 1.91 6.17 -52.48 -0.32 1.59 16 31 H 0.12 3.07 6.18 -52.49 -0.32 2.74 16 32 H 0.28 6.26 8.30 -40.82 -0.34 5.93 16 33 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 34 H 0.09 1.80 6.17 -52.48 -0.32 1.48 16 35 H 0.13 2.09 6.18 -52.49 -0.32 1.77 16 36 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -29.10 315.05 -8.71 -37.81 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.71 Total: 7.54 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -4.78 Total: -30.88 kcal Atomic # 7 Polarization: -19.02 SS G_CDS: 0.61 Total: -18.41 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.55 Total: -13.34 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.10 -8.71 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368570.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.879 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds