Wall clock time and date at job start Tue Mar 31 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.20825 * 119.99780 * 2 1 4 4 O 1.34272 * 119.99838 * 180.02562 * 2 1 3 5 5 C 1.35842 * 116.99925 * 182.89791 * 4 2 1 6 6 C 1.38946 * 119.91847 * 93.46931 * 5 4 2 7 7 C 1.37775 * 120.09585 * 180.02562 * 6 5 4 8 8 C 1.39684 * 119.90617 * 359.97438 * 7 6 5 9 9 C 1.47905 * 120.08508 * 180.02562 * 8 7 6 10 10 C 1.39988 * 119.88532 * 359.72272 * 9 8 7 11 11 C 1.36220 * 120.11806 * 179.71659 * 10 9 8 12 12 C 1.40953 * 119.87715 * 0.55887 * 11 10 9 13 13 C 1.40999 * 120.11150 * 179.69641 * 12 11 10 14 14 H 1.08002 * 119.99603 * 206.26819 * 13 12 11 15 15 C 1.39983 * 119.99720 * 26.26294 * 13 12 11 16 16 N 1.30807 * 120.00420 * 15.30714 * 15 13 12 17 17 Si 1.86804 * 119.99567 * 195.30105 * 15 13 12 18 18 H 1.48500 * 109.47271 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46780 * 120.00301 * 17 15 13 20 20 H 1.48500 * 109.47416 * 240.00185 * 17 15 13 21 21 C 1.40949 * 119.77198 * 359.71871 * 12 11 10 22 22 C 1.36218 * 119.88338 * 359.97438 * 21 12 11 23 23 C 1.39691 * 119.82843 * 0.26910 * 8 7 6 24 24 C 1.37777 * 119.90624 * 359.47745 * 23 8 7 25 25 H 1.08990 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46585 * 299.99714 * 1 2 3 27 27 H 1.08998 * 109.47103 * 59.99269 * 1 2 3 28 28 H 1.08005 * 119.95050 * 0.02562 * 6 5 4 29 29 H 1.08002 * 120.04347 * 179.97438 * 7 6 5 30 30 H 1.08007 * 119.93710 * 359.97438 * 10 9 8 31 31 H 1.07993 * 120.05821 * 180.27384 * 11 10 9 32 32 H 0.96998 * 120.00439 * 179.97438 * 16 15 13 33 33 H 1.08003 * 120.05477 * 180.02562 * 21 12 11 34 34 H 1.08004 * 119.93619 * 179.97438 * 22 21 12 35 35 H 1.08002 * 120.04616 * 179.69886 * 23 8 7 36 36 H 1.08001 * 119.95324 * 180.24874 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1784 -1.1628 -0.0005 5 6 3.5336 -1.0926 0.0607 6 6 4.1762 -1.1604 1.2908 7 6 5.5505 -1.0890 1.3572 8 6 6.2980 -0.9487 0.1855 9 6 7.7736 -0.8722 0.2521 10 6 8.4200 -0.9347 1.4923 11 6 9.7791 -0.8705 1.5587 12 6 10.5339 -0.7290 0.3767 13 6 11.9405 -0.6556 0.4403 14 1 12.4901 -0.1436 -0.3358 15 6 12.6246 -1.2462 1.5093 16 7 12.0142 -2.1095 2.2795 17 14 14.4093 -0.8017 1.8358 18 1 14.8643 0.1911 0.8294 19 1 14.5334 -0.2193 3.1963 20 1 15.2489 -2.0229 1.7417 21 6 9.8777 -0.6606 -0.8688 22 6 8.5185 -0.7321 -0.9247 23 6 5.6480 -0.8757 -1.0488 24 6 4.2737 -0.9532 -1.1071 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.5975 -1.2693 2.1962 29 1 6.0491 -1.1414 2.3138 30 1 7.8403 -1.0383 2.3977 31 1 10.2770 -0.9233 2.5155 32 1 12.4883 -2.5191 3.0200 33 1 10.4516 -0.5526 -1.7773 34 1 8.0148 -0.6794 -1.8786 35 1 6.2223 -0.7624 -1.9565 36 1 3.7706 -0.9009 -2.0613 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368570.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:06 Heat of formation + Delta-G solvation = -54.590257 kcal Electronic energy + Delta-G solvation = -20159.388170 eV Core-core repulsion = 16958.536823 eV Total energy + Delta-G solvation = -3200.851347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.22833 -40.25770 -38.98575 -37.73562 -35.67558 -32.93072 -32.36683 -31.35947 -31.15611 -29.81198 -26.91551 -24.37233 -24.32536 -22.61578 -22.12025 -21.41673 -19.49467 -19.14923 -17.99289 -17.62678 -17.53444 -17.01049 -16.12694 -15.88136 -15.29244 -15.01622 -14.92118 -14.61350 -14.52347 -14.13658 -13.80368 -13.60238 -13.55863 -13.41748 -13.23738 -12.88434 -12.80407 -12.63386 -12.50689 -12.11855 -11.79650 -11.73788 -11.55056 -11.18100 -11.11306 -10.17290 -10.01516 -9.52283 -8.83514 -8.66913 -6.36932 -0.18971 0.39465 1.00163 1.08677 1.16740 1.37775 1.48441 1.53237 1.94781 2.16888 2.59120 2.97890 3.70737 3.74048 3.83460 3.93597 4.04717 4.27234 4.42289 4.43275 4.48065 4.50702 4.57396 4.76953 4.94751 5.00327 5.05075 5.07118 5.20513 5.25199 5.31609 5.33995 5.50095 5.57718 5.67601 5.85607 6.03707 6.04475 6.21559 6.27403 6.60014 6.80745 6.82544 6.94438 8.22721 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.051349 B = 0.002977 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.161879 B = 9402.353214 C = 9658.840586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.446 3.554 3 O -0.544 6.544 4 O -0.292 6.292 5 C 0.032 3.968 6 C -0.111 4.111 7 C -0.136 4.136 8 C 0.002 3.998 9 C -0.205 4.205 10 C -0.082 4.082 11 C -0.192 4.192 12 C 0.088 3.912 13 C -0.482 4.482 14 H 0.082 0.918 15 C 0.032 3.968 16 N -0.814 5.814 17 Si 0.987 3.013 18 H -0.257 1.257 19 H -0.263 1.263 20 H -0.264 1.264 21 C -0.245 4.245 22 C -0.066 4.066 23 C -0.133 4.133 24 C -0.111 4.111 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.145 0.855 29 H 0.134 0.866 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.292 0.708 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.679 0.483 -1.854 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.293 3.707 3 O -0.432 6.432 4 O -0.207 6.207 5 C -0.009 4.009 6 C -0.129 4.129 7 C -0.154 4.154 8 C 0.002 3.998 9 C -0.206 4.206 10 C -0.100 4.100 11 C -0.212 4.212 12 C 0.085 3.915 13 C -0.510 4.510 14 H 0.100 0.900 15 C -0.184 4.184 16 N -0.439 5.439 17 Si 0.807 3.193 18 H -0.180 1.180 19 H -0.188 1.188 20 H -0.189 1.189 21 C -0.264 4.264 22 C -0.084 4.084 23 C -0.151 4.151 24 C -0.129 4.129 25 H 0.133 0.867 26 H 0.141 0.859 27 H 0.142 0.858 28 H 0.162 0.838 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.450 0.625 -1.665 16.545 hybrid contribution 1.182 0.054 0.265 1.213 sum -15.267 0.679 -1.400 15.346 Atomic orbital electron populations 1.21778 0.81760 1.07896 1.07517 1.25567 0.93973 0.80636 0.70556 1.90720 1.71909 1.34094 1.46482 1.84646 1.17327 1.35349 1.83394 1.18602 0.80925 1.07469 0.93938 1.21226 0.94626 0.99919 0.97098 1.21224 0.93117 1.02430 0.98582 1.19141 0.92351 0.94639 0.93633 1.18370 0.90912 1.17614 0.93678 1.20788 0.94333 0.98388 0.96461 1.21002 0.93090 1.08674 0.98412 1.18120 0.94151 0.87490 0.91713 1.19976 0.92335 1.31018 1.07674 0.89994 1.26883 1.05641 0.92124 0.93761 1.69855 1.40696 1.19060 1.14256 0.85078 0.75489 0.79377 0.79329 1.17997 1.18772 1.18856 1.20926 0.94625 1.14202 0.96657 1.20722 0.93549 0.97101 0.97049 1.21231 0.93721 1.02350 0.97803 1.21264 0.94046 0.99459 0.98136 0.86717 0.85853 0.85809 0.83757 0.84785 0.87012 0.87644 0.89691 0.87759 0.85941 0.84290 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 10.42 71.24 0.74 -0.51 16 2 C 0.45 10.25 8.01 71.24 0.57 10.82 16 3 O -0.54 -17.52 16.84 21.96 0.37 -17.15 16 4 O -0.29 -7.55 10.01 5.39 0.05 -7.50 16 5 C 0.03 0.98 4.92 22.61 0.11 1.09 16 6 C -0.11 -3.45 9.97 22.33 0.22 -3.23 16 7 C -0.14 -4.75 9.42 22.51 0.21 -4.53 16 8 C 0.00 0.09 5.88 -20.02 -0.12 -0.02 16 9 C -0.20 -9.11 5.90 -19.87 -0.12 -9.22 16 10 C -0.08 -3.83 9.36 22.22 0.21 -3.62 16 11 C -0.19 -10.10 8.61 22.46 0.19 -9.91 16 12 C 0.09 4.71 5.56 -21.27 -0.12 4.59 16 13 C -0.48 -25.37 9.03 23.37 0.21 -25.16 16 14 H 0.08 4.13 7.89 -2.91 -0.02 4.11 16 15 C 0.03 1.58 5.17 85.27 0.44 2.02 16 16 N -0.81 -41.43 10.91 21.83 0.24 -41.19 16 17 Si 0.99 36.86 29.59 68.60 2.03 38.89 16 18 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 19 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 20 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 21 C -0.24 -11.95 9.73 22.46 0.22 -11.73 16 22 C -0.07 -2.93 9.36 22.22 0.21 -2.73 16 23 C -0.13 -4.55 9.42 22.51 0.21 -4.34 16 24 C -0.11 -3.44 9.97 22.33 0.22 -3.22 16 25 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.12 0.76 8.14 -2.39 -0.02 0.75 16 28 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 29 H 0.13 4.42 6.18 -2.91 -0.02 4.41 16 30 H 0.11 4.66 6.17 -2.91 -0.02 4.64 16 31 H 0.11 5.73 6.18 -2.91 -0.02 5.71 16 32 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 33 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.12 4.57 6.17 -2.91 -0.02 4.55 16 35 H 0.14 4.30 6.18 -2.91 -0.02 4.28 16 36 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -65.65 315.05 7.22 -58.43 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 1.11 Total: 28.21 kcal Atomic # 6 Polarization: -63.11 SS G_CDS: 3.42 Total: -59.69 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.24 Total: -41.19 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: 0.42 Total: -24.65 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Total: -65.65 7.22 -58.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368570.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.840 kcal (2) G-P(sol) polarization free energy of solvation -65.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds