Wall clock time and date at job start Tue Mar 31 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38843 * 120.34219 * 2 1 4 4 C 1.38347 * 118.49642 * 180.02562 * 3 2 1 5 5 C 1.39063 * 119.09940 * 359.97438 * 4 3 2 6 6 N 1.39324 * 119.69730 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00124 * 185.31770 * 6 5 4 8 8 O 1.21549 * 119.99848 * 354.96561 * 7 6 5 9 9 C 1.47842 * 119.99990 * 175.23017 * 7 6 5 10 10 C 1.39936 * 120.02554 * 359.45497 * 9 7 6 11 11 C 1.38332 * 120.35161 * 179.73593 * 10 9 7 12 12 C 1.37756 * 120.41412 * 0.56053 * 11 10 9 13 13 C 1.40747 * 120.04454 * 359.69477 * 12 11 10 14 14 C 1.41433 * 120.17766 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00047 * 330.48633 * 14 13 12 16 16 C 1.39933 * 120.00355 * 150.49268 * 14 13 12 17 17 N 1.30832 * 119.99644 * 350.04137 * 16 14 13 18 18 Si 1.86796 * 120.00521 * 170.04519 * 16 14 13 19 19 H 1.48495 * 109.47199 * 59.99667 * 18 16 14 20 20 H 1.48499 * 109.47291 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47123 * 299.99680 * 18 16 14 22 22 C 1.39011 * 120.02436 * 179.72386 * 9 7 6 23 23 N 1.32358 * 120.60673 * 0.27580 * 5 4 3 24 24 C 1.31939 * 121.62867 * 359.43622 * 23 5 4 25 25 H 1.08995 * 109.47064 * 90.00193 * 1 2 3 26 26 H 1.09000 * 109.47184 * 209.99960 * 1 2 3 27 27 H 1.09001 * 109.46851 * 329.99813 * 1 2 3 28 28 H 1.07997 * 120.75406 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.45027 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00060 * 5.32204 * 6 5 4 31 31 H 1.07993 * 119.82639 * 359.97438 * 10 9 7 32 32 H 1.08002 * 119.79164 * 180.27712 * 11 10 9 33 33 H 1.07999 * 119.97664 * 179.71933 * 12 11 10 34 34 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.20908 * 359.96523 * 22 9 7 36 36 H 1.08004 * 119.57296 * 180.29117 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1983 0.0000 4 6 3.5912 1.1537 -0.0005 5 6 4.2280 -0.0826 -0.0005 6 7 5.6199 -0.1420 -0.0016 7 6 6.2436 -1.3319 -0.1098 8 8 5.5950 -2.3598 -0.1142 9 6 7.7171 -1.3871 -0.2171 10 6 8.4640 -0.2037 -0.2180 11 6 9.8433 -0.2478 -0.3126 12 6 10.4968 -1.4558 -0.4187 13 6 9.7622 -2.6563 -0.4249 14 6 10.4303 -3.8981 -0.5331 15 1 11.3677 -3.9624 -1.0655 16 6 9.8767 -5.0436 0.0496 17 7 8.8511 -4.9374 0.8550 18 14 10.6019 -6.7244 -0.3223 19 1 12.0236 -6.7557 0.1053 20 1 9.8411 -7.7658 0.4137 21 1 10.5180 -6.9879 -1.7814 22 6 8.3613 -2.6144 -0.3229 23 7 3.5239 -1.2033 -0.0055 24 6 2.2045 -1.1916 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6864 2.1437 0.0004 29 1 4.1682 2.0666 -0.0001 30 1 6.1402 0.6730 0.0755 31 1 7.9611 0.7489 -0.1405 32 1 10.4111 0.6710 -0.3079 33 1 11.5737 -1.4817 -0.4967 34 1 8.4676 -5.7314 1.2592 35 1 7.7887 -3.5301 -0.3265 36 1 1.6632 -2.1261 0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044907078.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:22 Heat of formation + Delta-G solvation = 25.583892 kcal Electronic energy + Delta-G solvation = -20507.558175 eV Core-core repulsion = 17342.476191 eV Total energy + Delta-G solvation = -3165.081984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55210 -38.85893 -37.04914 -34.78911 -33.72953 -32.82074 -31.42673 -30.08008 -29.47090 -26.71219 -25.30753 -24.05005 -22.87243 -21.54233 -20.93987 -19.62652 -18.13349 -17.51573 -16.25248 -15.70817 -15.18580 -15.07420 -14.90704 -14.62905 -14.37626 -13.83843 -13.76471 -13.22643 -12.98623 -12.75039 -12.67864 -12.54970 -12.54027 -11.78155 -11.68406 -11.16632 -11.11895 -10.78919 -10.52975 -10.26873 -10.08634 -9.74772 -9.73568 -9.53631 -9.26961 -8.63411 -7.97562 -7.65622 -7.51344 -6.74860 -4.45623 1.17768 1.40501 2.19327 2.79822 3.08379 3.10357 3.13875 3.26557 3.69675 3.92867 4.11833 4.57038 4.66045 4.80170 4.91792 5.02356 5.15926 5.37170 5.47830 5.54858 5.62300 5.78665 5.82619 5.95526 6.03250 6.19441 6.27093 6.49596 6.65286 6.88122 6.96643 7.03312 7.20086 7.33363 7.51088 7.64727 7.78473 7.93194 8.13788 8.33956 8.47679 8.79430 8.79760 8.87905 10.19221 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.003936 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.260099 B = 7112.524078 C = 8191.152774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.189 4.189 3 C -0.049 4.049 4 C -0.214 4.214 5 C 0.369 3.631 6 N -0.663 5.663 7 C 0.552 3.448 8 O -0.474 6.474 9 C -0.131 4.131 10 C -0.215 4.215 11 C -0.099 4.099 12 C -0.206 4.206 13 C 0.099 3.901 14 C -0.461 4.461 15 H 0.080 0.920 16 C 0.070 3.930 17 N -0.792 5.792 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.082 4.082 23 N -0.473 5.473 24 C 0.135 3.865 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.415 0.585 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.285 0.715 35 H 0.137 0.863 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 10.168 -0.797 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.192 4.192 3 C -0.075 4.075 4 C -0.238 4.238 5 C 0.137 3.863 6 N -0.310 5.310 7 C 0.342 3.658 8 O -0.344 6.344 9 C -0.134 4.134 10 C -0.235 4.235 11 C -0.117 4.117 12 C -0.226 4.226 13 C 0.096 3.904 14 C -0.491 4.491 15 H 0.099 0.901 16 C -0.148 4.148 17 N -0.417 5.417 18 Si 0.739 3.261 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.102 4.102 23 N -0.187 5.187 24 C -0.024 4.024 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.253 0.747 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.110 8.398 -0.663 13.942 hybrid contribution 0.198 0.620 0.042 0.653 sum -10.911 9.018 -0.621 14.169 Atomic orbital electron populations 1.20590 0.90519 1.02596 1.02048 1.20777 0.97369 0.94250 1.06838 1.21152 0.93012 0.97994 0.95325 1.21452 0.95535 0.97056 1.09753 1.18633 0.85242 0.89537 0.92863 1.43850 1.03032 1.11807 1.72332 1.19102 0.88763 0.82262 0.75693 1.90812 1.66825 1.32518 1.44216 1.19438 0.89407 0.95648 1.08936 1.20358 0.94162 0.94704 1.14316 1.20443 0.93706 0.96628 1.00968 1.21181 0.98060 0.92573 1.10749 1.17613 0.91185 0.92681 0.88882 1.19545 1.06954 0.91853 1.30707 0.90150 1.25953 0.94223 1.01492 0.93098 1.69740 1.18891 1.32227 1.20844 0.86254 0.79691 0.80388 0.79735 1.19026 1.20224 1.18799 1.21710 0.94592 0.95635 0.98233 1.67791 1.07682 1.28573 1.14630 1.22613 0.88919 0.97447 0.93428 0.91512 0.91532 0.91848 0.84947 0.84854 0.74668 0.89251 0.88723 0.88437 0.90405 0.84534 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.03 36.01 0.36 -0.43 16 2 C -0.19 -2.18 5.90 -104.46 -0.62 -2.80 16 3 C -0.05 -0.53 9.85 -39.32 -0.39 -0.92 16 4 C -0.21 -2.71 9.94 -39.24 -0.39 -3.10 16 5 C 0.37 6.28 7.42 -154.77 -1.15 5.14 16 6 N -0.66 -11.79 5.33 -12.29 -0.07 -11.85 16 7 C 0.55 12.49 7.73 -12.33 -0.10 12.39 16 8 O -0.47 -12.34 14.59 5.32 0.08 -12.27 16 9 C -0.13 -3.09 5.87 -105.05 -0.62 -3.71 16 10 C -0.22 -4.44 9.54 -38.91 -0.37 -4.81 16 11 C -0.10 -2.07 10.01 -39.72 -0.40 -2.47 16 12 C -0.21 -4.82 9.78 -38.81 -0.38 -5.20 16 13 C 0.10 2.60 5.54 -106.87 -0.59 2.01 16 14 C -0.46 -12.09 9.06 -37.73 -0.34 -12.43 16 15 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 16 C 0.07 1.79 5.26 -17.34 -0.09 1.70 16 17 N -0.79 -21.17 10.85 55.55 0.60 -20.56 16 18 Si 0.91 18.94 29.57 -169.99 -5.03 13.91 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.08 -2.18 8.20 -38.44 -0.32 -2.49 16 23 N -0.47 -8.95 7.88 -12.38 -0.10 -9.05 16 24 C 0.13 1.97 10.85 -17.57 -0.19 1.78 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.42 5.92 6.73 -40.82 -0.27 5.64 16 31 H 0.09 1.48 6.39 -52.49 -0.34 1.14 16 32 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 34 H 0.28 7.05 8.30 -40.82 -0.34 6.72 16 35 H 0.14 3.96 5.83 -52.49 -0.31 3.66 16 36 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -31.75 314.26 -9.19 -40.93 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -3.84 Total: 9.50 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -5.57 Total: -15.35 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.44 Total: -41.47 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.75 -9.19 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044907078.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.518 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds