Wall clock time and date at job start Tue Mar 31 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39791 * 120.06683 * 214.95437 * 3 2 1 5 5 C 1.38094 * 120.20757 * 180.02562 * 4 3 2 6 6 C 1.38024 * 120.33367 * 0.02562 * 5 4 3 7 7 C 1.39944 * 120.12872 * 359.97438 * 6 5 4 8 8 C 1.47172 * 120.10070 * 179.72726 * 7 6 5 9 9 C 1.34957 * 119.99969 * 359.97438 * 8 7 6 10 10 C 1.46231 * 120.00269 * 179.97438 * 9 8 7 11 11 O 1.21759 * 119.99919 * 354.41705 * 10 9 8 12 12 N 1.34772 * 120.00416 * 174.40633 * 10 9 8 13 13 C 1.36713 * 120.00510 * 184.50068 * 12 10 9 14 14 H 1.08000 * 119.99565 * 16.40265 * 13 12 10 15 15 C 1.39125 * 120.00685 * 196.39990 * 13 12 10 16 16 N 1.31325 * 119.99522 * 11.52906 * 15 13 12 17 17 Si 1.86796 * 120.00353 * 191.52496 * 15 13 12 18 18 H 1.48504 * 109.47087 * 60.00200 * 17 15 13 19 19 H 1.48497 * 109.46913 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47387 * 300.00099 * 17 15 13 21 21 C 1.46502 * 119.99889 * 4.50618 * 12 10 9 22 22 C 1.53002 * 117.49563 * 308.76236 * 21 12 10 23 23 C 1.53006 * 117.49508 * 240.10478 * 21 12 10 24 24 C 1.39294 * 120.07380 * 34.98129 * 3 2 1 25 25 H 1.08004 * 119.89590 * 359.97438 * 4 3 2 26 26 H 1.07995 * 119.83628 * 179.97438 * 5 4 3 27 27 H 1.08003 * 119.93656 * 180.02562 * 6 5 4 28 28 H 1.07997 * 119.99846 * 180.02562 * 8 7 6 29 29 H 1.08007 * 120.00204 * 0.02562 * 9 8 7 30 30 H 0.97004 * 119.99944 * 180.02562 * 16 15 13 31 31 H 1.08997 * 115.55275 * 94.43332 * 21 12 10 32 32 H 1.08994 * 117.50068 * 0.02562 * 22 21 12 33 33 H 1.09000 * 117.49395 * 145.02364 * 22 21 12 34 34 H 1.09001 * 117.49385 * 214.97291 * 23 21 12 35 35 H 1.08996 * 117.50202 * 359.97438 * 23 21 12 36 36 H 1.08001 * 120.16163 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 0.9925 0.6931 5 6 4.6488 0.9962 0.6946 6 6 5.3492 0.0222 0.0122 7 6 4.6628 -0.9774 -0.6863 8 6 5.4102 -2.0123 -1.4187 9 6 6.7597 -1.9979 -1.4178 10 6 7.5025 -3.0264 -2.1450 11 8 6.9082 -3.9526 -2.6660 12 7 8.8447 -2.9490 -2.2388 13 6 9.5307 -3.8581 -2.9950 14 1 9.0060 -4.4638 -3.7189 15 6 10.9048 -4.0030 -2.8321 16 7 11.5075 -3.4414 -1.8093 17 14 11.8924 -4.9963 -4.0679 18 1 11.7531 -4.3886 -5.4158 19 1 13.3235 -4.9974 -3.6715 20 1 11.3858 -6.3919 -4.0993 21 6 9.5686 -1.8906 -1.5302 22 6 9.0876 -0.4516 -1.7275 23 6 10.3966 -0.9164 -2.3708 24 6 3.2664 -0.9867 -0.6911 25 1 2.7269 1.7588 1.2285 26 1 5.1835 1.7656 1.2318 27 1 6.4292 0.0310 0.0180 28 1 4.8788 -2.7827 -1.9576 29 1 7.2912 -1.2271 -0.8792 30 1 12.4656 -3.5421 -1.6958 31 1 9.9550 -2.1618 -0.5478 32 1 8.2323 -0.2925 -2.3841 33 1 9.1579 0.2238 -0.8750 34 1 11.3275 -0.5465 -1.9410 35 1 10.4030 -1.0632 -3.4508 36 1 2.7306 -1.7553 -1.2282 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049425986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:29 Heat of formation + Delta-G solvation = 77.804422 kcal Electronic energy + Delta-G solvation = -20471.412458 eV Core-core repulsion = 17308.594927 eV Total energy + Delta-G solvation = -3162.817532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.61544 -38.86686 -36.64664 -36.14453 -33.93641 -33.02686 -31.45476 -31.23354 -29.57302 -25.67804 -24.31104 -23.26973 -22.02669 -21.55497 -20.85333 -18.92918 -17.63092 -17.08661 -16.55636 -16.13829 -15.35477 -15.16862 -14.57684 -14.22844 -14.18185 -14.11624 -13.59130 -13.28522 -13.20074 -12.97674 -12.80218 -12.54153 -12.39791 -11.84627 -11.45745 -11.38518 -11.20070 -10.92980 -10.83789 -10.52980 -10.46074 -10.07879 -9.96807 -9.48316 -9.12721 -8.96952 -8.46757 -8.07759 -7.89333 -6.46640 -3.91913 0.54046 0.89032 2.18290 2.50372 2.95613 3.15110 3.16797 3.20485 3.70624 3.81163 3.99608 4.33256 4.55929 4.59884 4.69718 4.78822 4.96943 5.08135 5.12652 5.26238 5.42311 5.68012 5.69518 5.74110 5.82530 5.95016 6.11091 6.11631 6.13231 6.23341 6.27468 6.64665 6.67699 6.82455 6.86306 6.92696 7.13198 7.31663 7.40802 7.96065 8.36296 9.06418 9.27765 9.89505 10.54488 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033975 B = 0.003542 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.937688 B = 7902.237401 C = 8572.017174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.261 3.739 3 C -0.032 4.032 4 C -0.082 4.082 5 C -0.116 4.116 6 C -0.089 4.089 7 C -0.036 4.036 8 C -0.107 4.107 9 C -0.141 4.141 10 C 0.456 3.544 11 O -0.597 6.597 12 N -0.402 5.402 13 C -0.301 4.301 14 H 0.105 0.895 15 C 0.036 3.964 16 N -0.860 5.860 17 Si 0.927 3.073 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.271 1.271 21 C 0.134 3.866 22 C -0.229 4.229 23 C -0.145 4.145 24 C -0.064 4.064 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.271 0.729 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 10.532 5.258 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.055 4.055 3 C -0.035 4.035 4 C -0.103 4.103 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.036 4.036 8 C -0.128 4.128 9 C -0.162 4.162 10 C 0.248 3.752 11 O -0.485 6.485 12 N -0.117 5.117 13 C -0.428 4.428 14 H 0.123 0.877 15 C -0.170 4.170 16 N -0.497 5.497 17 Si 0.754 3.246 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.196 1.196 21 C 0.029 3.971 22 C -0.267 4.267 23 C -0.183 4.183 24 C -0.085 4.085 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.924 10.063 5.067 13.225 hybrid contribution 1.240 -0.362 -0.486 1.380 sum -5.685 9.701 4.581 12.141 Atomic orbital electron populations 1.81241 1.12136 1.08096 1.08694 1.25768 0.92708 0.93511 0.93470 1.15880 0.84084 0.99442 1.04087 1.21157 0.94449 0.96983 0.97724 1.20997 0.93390 0.99163 0.99800 1.21746 1.00950 0.93153 0.94883 1.19040 0.92331 0.95290 0.96945 1.21992 0.94191 0.97318 0.99331 1.23612 0.94883 0.98624 0.99080 1.17782 0.82420 0.87967 0.87003 1.90654 1.68129 1.36590 1.53086 1.43178 1.04289 1.23840 1.40423 1.19734 0.90370 1.16590 1.16156 0.87739 1.25336 0.97198 0.97511 0.96918 1.69873 1.11008 1.42405 1.26431 0.85965 0.78118 0.80192 0.80357 1.19776 1.20776 1.19623 1.21228 0.96980 0.81356 0.97581 1.23720 0.99765 0.99328 1.03929 1.22784 0.93235 1.02739 0.99522 1.21376 0.93388 0.96827 0.96891 0.85326 0.84888 0.84651 0.85046 0.85374 0.91835 0.86601 0.89232 0.89084 0.89474 0.89551 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.83 18.54 41.84 0.78 -5.06 16 2 C 0.26 3.02 15.32 -22.48 -0.34 2.68 16 3 C -0.03 -0.32 5.72 -107.00 -0.61 -0.93 16 4 C -0.08 -0.70 9.75 -39.05 -0.38 -1.08 16 5 C -0.12 -0.96 10.01 -39.71 -0.40 -1.36 16 6 C -0.09 -0.92 9.41 -39.02 -0.37 -1.29 16 7 C -0.04 -0.44 5.86 -105.11 -0.62 -1.06 16 8 C -0.11 -1.69 9.46 -37.12 -0.35 -2.04 16 9 C -0.14 -2.52 7.54 -37.54 -0.28 -2.81 16 10 C 0.46 10.82 7.47 -13.05 -0.10 10.72 16 11 O -0.60 -16.31 15.91 5.14 0.08 -16.23 16 12 N -0.40 -9.77 2.93 -109.36 -0.32 -10.09 16 13 C -0.30 -7.96 9.25 -15.05 -0.14 -8.10 16 14 H 0.10 2.92 7.34 -52.49 -0.39 2.54 16 15 C 0.04 0.89 5.01 -17.44 -0.09 0.81 16 16 N -0.86 -20.93 10.08 55.51 0.56 -20.37 16 17 Si 0.93 19.64 29.57 -169.99 -5.03 14.61 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 C 0.13 2.75 3.61 -67.93 -0.25 2.50 16 22 C -0.23 -3.67 7.79 -26.69 -0.21 -3.88 16 23 C -0.15 -2.72 8.89 -26.69 -0.24 -2.96 16 24 C -0.06 -0.71 9.50 -38.67 -0.37 -1.08 16 25 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 26 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 27 H 0.14 1.32 6.15 -52.48 -0.32 0.99 16 28 H 0.13 2.22 7.53 -52.49 -0.40 1.83 16 29 H 0.13 1.95 3.25 -52.48 -0.17 1.78 16 30 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 31 H 0.12 2.49 7.68 -51.93 -0.40 2.09 16 32 H 0.09 1.44 7.04 -51.93 -0.37 1.08 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -29.69 318.83 -7.57 -37.26 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.71 Total: 4.93 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -4.73 Total: -9.86 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 1.01 Total: -35.52 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.08 Total: -16.23 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.69 -7.57 -37.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049425986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.065 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds