Wall clock time and date at job start Tue Mar 31 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39420 * 120.24345 * 70.45531 * 3 2 1 5 5 C 1.38044 * 120.01902 * 179.97438 * 4 3 2 6 6 C 1.38570 * 120.50661 * 0.02562 * 5 4 3 7 7 C 1.37926 * 120.49192 * 359.97438 * 6 5 4 8 8 C 1.39720 * 119.96639 * 0.02562 * 7 6 5 9 9 C 1.46937 * 120.25480 * 180.27437 * 8 7 6 10 10 C 1.35080 * 119.99292 * 359.71456 * 9 8 7 11 11 C 1.46269 * 119.99881 * 180.02562 * 10 9 8 12 12 O 1.21763 * 119.99626 * 354.41258 * 11 10 9 13 13 N 1.34768 * 120.00056 * 174.41460 * 11 10 9 14 14 C 1.36610 * 120.00067 * 184.49501 * 13 11 10 15 15 H 1.08006 * 119.99852 * 16.39649 * 14 13 11 16 16 C 1.39201 * 120.00230 * 196.39755 * 14 13 11 17 17 N 1.31275 * 119.99830 * 11.53519 * 16 14 13 18 18 Si 1.86800 * 120.00207 * 191.54028 * 16 14 13 19 19 H 1.48498 * 109.46941 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47493 * 119.99894 * 18 16 14 21 21 H 1.48500 * 109.47117 * 239.99931 * 18 16 14 22 22 C 1.46503 * 120.00063 * 4.49147 * 13 11 10 23 23 C 1.53002 * 117.50101 * 308.76677 * 22 13 11 24 24 C 1.53009 * 117.50017 * 240.10732 * 22 13 11 25 25 H 1.08002 * 119.98863 * 359.95666 * 4 3 2 26 26 H 1.07998 * 119.74331 * 179.97438 * 5 4 3 27 27 H 1.08003 * 119.75325 * 180.02562 * 6 5 4 28 28 H 1.07997 * 120.02092 * 180.02562 * 7 6 5 29 29 H 1.07999 * 120.00428 * 179.72253 * 9 8 7 30 30 H 1.07999 * 120.00279 * 0.02562 * 10 9 8 31 31 H 0.96998 * 119.99822 * 179.97438 * 17 16 14 32 32 H 1.09001 * 115.54990 * 94.44228 * 22 13 11 33 33 H 1.08999 * 117.49225 * 0.02562 * 23 22 13 34 34 H 1.09000 * 117.49977 * 145.01820 * 23 22 13 35 35 H 1.08999 * 117.49808 * 214.98144 * 24 22 13 36 36 H 1.08998 * 117.49445 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 -0.4020 -1.1350 5 6 4.6508 -0.3991 -1.1301 6 6 5.3494 0.0016 -0.0025 7 6 4.6758 0.4040 1.1319 8 6 3.2787 0.4089 1.1491 9 6 2.5546 0.8420 2.3520 10 6 3.2399 1.2321 3.4488 11 6 2.5192 1.6627 4.6466 12 8 1.3063 1.7672 4.6227 13 7 3.1977 1.9440 5.7766 14 6 2.5196 2.2571 6.9204 15 1 1.4675 2.0279 7.0044 16 6 3.1847 2.8714 7.9778 17 7 4.3927 3.3542 7.8016 18 14 2.3583 3.0088 9.6474 19 1 1.0091 2.3918 9.5842 20 1 3.1783 2.3040 10.6652 21 1 2.2302 4.4406 10.0200 22 6 4.6624 1.9139 5.7783 23 6 5.3440 0.6610 5.2245 24 6 5.3478 0.9322 6.7311 25 1 2.7343 -0.7165 -2.0183 26 1 5.1904 -0.7122 -2.0117 27 1 6.4294 -0.0005 -0.0121 28 1 5.2279 0.7151 2.0064 29 1 1.4747 0.8485 2.3594 30 1 4.3198 1.2259 3.4414 31 1 4.8559 3.7826 8.5383 32 1 5.1525 2.8719 5.6046 33 1 4.7025 -0.1407 4.8586 34 1 6.2826 0.7946 4.6868 35 1 6.2889 1.2443 7.1838 36 1 4.7089 0.3092 7.3569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426069.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:39 Heat of formation + Delta-G solvation = 79.253905 kcal Electronic energy + Delta-G solvation = -20765.297548 eV Core-core repulsion = 17602.542871 eV Total energy + Delta-G solvation = -3162.754677 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62560 -38.85448 -36.30164 -36.17208 -33.98356 -33.04054 -31.44727 -31.25264 -29.50783 -25.75109 -23.89892 -23.70770 -21.96726 -21.57964 -20.52928 -18.76297 -18.22936 -17.14039 -16.48335 -15.72185 -15.35475 -15.19071 -14.51338 -14.32898 -14.04905 -14.03873 -13.67845 -13.19820 -13.05348 -12.83724 -12.71747 -12.48634 -12.38992 -11.87435 -11.47035 -11.25311 -11.16489 -10.96421 -10.85417 -10.53783 -10.40266 -10.10243 -9.99228 -9.49236 -9.07445 -8.99162 -8.46645 -8.07379 -7.90653 -6.49051 -3.92124 0.48232 0.99365 2.30871 2.76802 3.01228 3.10480 3.17609 3.24401 3.90802 3.92866 3.98186 4.32292 4.51832 4.57818 4.73189 4.81516 4.87697 5.09139 5.19025 5.29684 5.49470 5.58719 5.68982 5.74076 5.86253 5.97699 6.09364 6.13080 6.14256 6.23093 6.32972 6.63906 6.69674 6.81212 6.83764 6.88883 7.12021 7.39121 7.57953 7.94910 8.35035 9.05352 9.25758 9.88811 10.51957 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025166 B = 0.004294 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.351890 B = 6519.459589 C = 7473.700332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.256 3.744 3 C -0.032 4.032 4 C -0.068 4.068 5 C -0.135 4.135 6 C -0.086 4.086 7 C -0.121 4.121 8 C 0.015 3.985 9 C -0.123 4.123 10 C -0.125 4.125 11 C 0.451 3.549 12 O -0.595 6.595 13 N -0.399 5.399 14 C -0.298 4.298 15 H 0.107 0.893 16 C 0.036 3.964 17 N -0.857 5.857 18 Si 0.927 3.073 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.131 3.869 23 C -0.229 4.229 24 C -0.144 4.144 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.271 0.729 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.456 -6.162 -11.824 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.059 4.059 3 C -0.036 4.036 4 C -0.088 4.088 5 C -0.153 4.153 6 C -0.104 4.104 7 C -0.139 4.139 8 C 0.012 3.988 9 C -0.144 4.144 10 C -0.146 4.146 11 C 0.244 3.756 12 O -0.482 6.482 13 N -0.114 5.114 14 C -0.426 4.426 15 H 0.124 0.876 16 C -0.170 4.170 17 N -0.494 5.494 18 Si 0.753 3.247 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.205 1.205 22 C 0.026 3.974 23 C -0.267 4.267 24 C -0.182 4.182 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.250 -5.973 -11.624 14.945 hybrid contribution 0.340 0.177 1.004 1.074 sum 7.590 -5.797 -10.620 14.283 Atomic orbital electron populations 1.81239 1.12036 1.08550 1.07445 1.25595 0.92645 0.93885 0.93734 1.16114 0.84334 1.07305 0.95803 1.21052 0.94399 0.97058 0.96305 1.21072 0.93452 1.01855 0.98921 1.21285 1.00346 0.96192 0.92621 1.21430 0.92754 1.00518 0.99217 1.19093 0.93052 0.94546 0.92059 1.21996 1.00024 1.01097 0.91282 1.23711 1.00515 0.96484 0.93900 1.17786 0.87565 0.86960 0.83316 1.90675 1.13771 1.59759 1.83996 1.43180 1.03734 1.55947 1.08561 1.19861 0.96304 1.36226 0.90200 0.87580 1.25359 0.96014 0.95296 1.00319 1.69866 1.12564 1.34425 1.32544 0.85839 0.79633 0.78221 0.81028 1.19041 1.20416 1.20504 1.21263 0.81256 0.92840 1.02035 1.23728 1.02498 1.01767 0.98754 1.22785 1.01797 1.02749 0.90876 0.85190 0.85266 0.85259 0.84465 0.85456 0.85083 0.91868 0.86490 0.89232 0.88981 0.89413 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.28 18.54 41.84 0.78 -6.50 16 2 C 0.26 3.89 13.95 -22.47 -0.31 3.58 16 3 C -0.03 -0.41 5.77 -106.43 -0.61 -1.02 16 4 C -0.07 -0.63 9.74 -39.21 -0.38 -1.02 16 5 C -0.13 -1.05 10.02 -39.53 -0.40 -1.45 16 6 C -0.09 -0.72 10.02 -39.57 -0.40 -1.12 16 7 C -0.12 -1.33 9.41 -39.14 -0.37 -1.70 16 8 C 0.02 0.21 5.90 -104.72 -0.62 -0.41 16 9 C -0.12 -2.17 9.01 -37.18 -0.34 -2.51 16 10 C -0.12 -2.37 7.54 -37.48 -0.28 -2.65 16 11 C 0.45 11.16 7.47 -13.04 -0.10 11.07 16 12 O -0.59 -17.08 15.91 5.13 0.08 -17.00 16 13 N -0.40 -9.91 2.93 -109.35 -0.32 -10.23 16 14 C -0.30 -8.03 9.25 -15.07 -0.14 -8.17 16 15 H 0.11 3.05 7.34 -52.48 -0.39 2.66 16 16 C 0.04 0.90 5.01 -17.43 -0.09 0.82 16 17 N -0.86 -20.99 10.08 55.51 0.56 -20.43 16 18 Si 0.93 19.87 29.57 -169.99 -5.03 14.84 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 C 0.13 2.74 3.61 -67.92 -0.25 2.50 16 23 C -0.23 -3.73 7.79 -26.69 -0.21 -3.94 16 24 C -0.14 -2.74 8.89 -26.69 -0.24 -2.97 16 25 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 26 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 27 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 28 H 0.14 1.39 6.16 -52.49 -0.32 1.07 16 29 H 0.13 2.60 6.68 -52.49 -0.35 2.25 16 30 H 0.13 2.08 3.26 -52.49 -0.17 1.90 16 31 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 32 H 0.12 2.54 7.68 -51.93 -0.40 2.14 16 33 H 0.09 1.48 7.04 -51.93 -0.37 1.11 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -31.02 316.80 -7.54 -38.56 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.67 Total: 4.98 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -4.72 Total: -9.00 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 1.01 Total: -37.17 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.08 Total: -17.00 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.02 -7.54 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426069.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.817 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds