Wall clock time and date at job start Tue Mar 31 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33392 * 125.20253 * 2 1 4 4 C 1.38424 * 114.92349 * 180.20862 * 3 2 1 5 5 C 1.50692 * 122.54232 * 179.76129 * 4 3 2 6 6 H 1.09000 * 109.47142 * 219.71193 * 5 4 3 7 7 C 1.52993 * 109.47298 * 99.71026 * 5 4 3 8 8 N 1.46901 * 109.46945 * 339.70846 * 5 4 3 9 9 C 1.46905 * 110.99870 * 205.00102 * 8 5 4 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 5 11 11 O 1.21297 * 120.00124 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00196 * 180.02562 * 10 9 8 13 13 C 1.37100 * 120.00290 * 180.02562 * 12 10 9 14 14 H 1.07990 * 119.99768 * 359.97438 * 13 12 10 15 15 C 1.38956 * 119.99812 * 180.02562 * 13 12 10 16 16 N 1.31408 * 119.99864 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99403 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47078 * 60.00286 * 17 15 13 19 19 H 1.48505 * 109.46585 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47705 * 299.99905 * 17 15 13 21 21 C 1.33391 * 114.91502 * 359.48979 * 4 3 2 22 22 C 1.50696 * 125.20018 * 180.28847 * 21 4 3 23 23 S 1.75882 * 125.20471 * 179.68716 * 2 1 3 24 24 H 1.08997 * 109.47248 * 180.28953 * 1 2 3 25 25 H 1.09004 * 109.47370 * 300.28880 * 1 2 3 26 26 H 1.09002 * 109.47036 * 60.28740 * 1 2 3 27 27 H 1.08001 * 122.54018 * 359.96780 * 3 2 1 28 28 H 1.09006 * 109.47343 * 60.00098 * 7 5 4 29 29 H 1.09004 * 109.47587 * 180.02562 * 7 5 4 30 30 H 1.09000 * 109.47161 * 300.00156 * 7 5 4 31 31 H 1.00901 * 111.00067 * 328.95277 * 8 5 4 32 32 H 1.09001 * 109.46798 * 300.00327 * 9 8 5 33 33 H 1.08998 * 109.46961 * 60.00043 * 9 8 5 34 34 H 0.97009 * 119.99629 * 359.97438 * 12 10 9 35 35 H 0.97004 * 119.99642 * 179.97438 * 16 15 13 36 36 H 1.09008 * 109.47158 * 90.00501 * 22 21 4 37 37 H 1.09000 * 109.47591 * 209.99662 * 22 21 4 38 38 H 1.08998 * 109.47629 * 330.00639 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8430 -0.0046 5 6 4.6622 1.9483 -0.0106 6 1 5.4866 1.6761 -0.6697 7 6 5.1926 2.1598 1.4088 8 7 4.0404 3.1894 -0.4911 9 6 5.0451 4.0922 -1.0687 10 6 4.3716 5.3518 -1.5490 11 8 3.1726 5.4847 -1.4222 12 7 5.1014 6.3308 -2.1196 13 6 4.4887 7.4770 -2.5560 14 1 3.4213 7.5952 -2.4431 15 6 5.2411 8.4860 -3.1447 16 7 6.5400 8.3417 -3.2826 17 14 4.4062 10.0473 -3.7400 18 1 3.7384 10.7186 -2.5960 19 1 5.4216 10.9591 -4.3257 20 1 3.3948 9.7053 -4.7722 21 6 3.9751 -0.4476 0.0025 22 6 5.3860 -0.9769 0.0058 23 16 2.5210 -1.4371 0.0078 24 1 -0.3633 -1.0276 0.0052 25 1 -0.3634 0.5183 0.8874 26 1 -0.3633 0.5094 -0.8926 27 1 1.8669 2.0895 -0.0005 28 1 5.6541 1.2389 1.7653 29 1 5.9332 2.9596 1.4046 30 1 4.3683 2.4320 2.0679 31 1 3.3067 2.9927 -1.1552 32 1 5.7866 4.3435 -0.3103 33 1 5.5363 3.5997 -1.9079 34 1 6.0603 6.2246 -2.2207 35 1 7.0652 9.0460 -3.6939 36 1 5.7259 -1.0991 1.0343 37 1 5.4139 -1.9406 -0.5028 38 1 6.0390 -0.2740 -0.5115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049507395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:41 Heat of formation + Delta-G solvation = -15.449541 kcal Electronic energy + Delta-G solvation = -19433.557746 eV Core-core repulsion = 16402.140371 eV Total energy + Delta-G solvation = -3031.417376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.29718 -38.05239 -35.36949 -33.88308 -33.13751 -31.21643 -30.04743 -29.45184 -26.53128 -24.97091 -24.24264 -22.58596 -20.90924 -19.23273 -18.14330 -17.84068 -17.07261 -16.13553 -15.40033 -15.20667 -14.45861 -14.39186 -14.14802 -13.83198 -13.54812 -13.43258 -13.14007 -13.07162 -12.94801 -12.58167 -12.19997 -11.89658 -11.84892 -11.79212 -11.53962 -11.37081 -11.24894 -11.06033 -10.94823 -10.47577 -10.42721 -10.19345 -9.48010 -8.46564 -8.41896 -8.28636 -8.04143 -7.93679 -6.39810 -3.80514 0.96066 1.57018 1.92876 2.71308 3.21567 3.26942 3.31535 3.93613 4.12717 4.37865 4.72571 4.76042 5.06436 5.13374 5.18442 5.22403 5.27571 5.33959 5.38946 5.44729 5.54288 5.69903 5.73095 5.78191 5.86880 5.90674 5.99919 6.02402 6.23651 6.26788 6.34532 6.44147 6.56208 7.30394 7.56844 7.70808 8.08393 8.63635 9.19826 9.56620 10.08303 10.77973 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.003301 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.484056 B = 8479.257042 C = 9128.798586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.181 4.181 3 C -0.121 4.121 4 C -0.096 4.096 5 C 0.143 3.857 6 H 0.051 0.949 7 C -0.133 4.133 8 N -0.662 5.662 9 C 0.050 3.950 10 C 0.442 3.558 11 O -0.583 6.583 12 N -0.564 5.564 13 C -0.300 4.300 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.931 3.069 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.182 4.182 22 C -0.081 4.081 23 S 0.074 5.926 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.152 0.848 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.351 0.649 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.392 0.608 35 H 0.272 0.728 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -19.252 6.622 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.298 4.298 3 C -0.150 4.150 4 C -0.108 4.108 5 C 0.031 3.969 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.296 5.296 9 C -0.083 4.083 10 C 0.227 3.773 11 O -0.467 6.467 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.299 4.299 22 C -0.139 4.139 23 S 0.339 5.661 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.169 0.831 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.172 0.828 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.225 0.775 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.471 -20.294 7.234 21.822 hybrid contribution 0.764 1.820 -1.237 2.330 sum -2.706 -18.473 5.997 19.610 Atomic orbital electron populations 1.20310 0.87910 1.02409 1.03237 1.24364 0.99748 0.95193 1.10488 1.20049 0.92200 1.00066 1.02720 1.18864 0.94818 0.93486 1.03622 1.20162 0.92932 0.86604 0.97186 0.93161 1.21754 1.01141 1.00866 0.95367 1.60232 1.12432 1.12571 1.44360 1.21729 0.94695 0.93705 0.98153 1.19799 0.87983 0.85487 0.83996 1.90517 1.14758 1.80938 1.60516 1.41853 1.10103 1.15424 1.52680 1.19658 0.94878 0.92973 1.35409 0.87987 1.25255 0.95428 0.99679 0.97561 1.69606 1.05157 1.35074 1.44561 0.85920 0.78494 0.80722 0.79094 1.19876 1.20992 1.19934 1.24115 0.98822 0.95713 1.11295 1.20332 0.89974 1.01040 1.02584 1.84027 0.96815 1.10172 1.75114 0.91832 0.90545 0.90437 0.83051 0.92830 0.92238 0.91802 0.82802 0.89534 0.93906 0.77469 0.91844 0.90802 0.91601 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.38 36.01 0.37 -0.37 16 2 C -0.18 -2.15 6.51 -36.00 -0.23 -2.38 16 3 C -0.12 -1.62 8.88 -41.21 -0.37 -1.99 16 4 C -0.10 -1.25 4.87 -106.25 -0.52 -1.77 16 5 C 0.14 1.93 2.49 -68.87 -0.17 1.76 16 6 H 0.05 0.64 6.66 -51.93 -0.35 0.30 16 7 C -0.13 -1.65 9.40 37.15 0.35 -1.30 16 8 N -0.66 -11.09 5.42 -109.23 -0.59 -11.68 16 9 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 10 C 0.44 10.58 7.82 -10.99 -0.09 10.49 16 11 O -0.58 -15.98 15.78 5.54 0.09 -15.90 16 12 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 13 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 14 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 17 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C -0.18 -2.10 6.50 -36.00 -0.23 -2.34 16 22 C -0.08 -0.72 9.79 36.00 0.35 -0.37 16 23 S 0.07 0.81 23.31 -107.50 -2.51 -1.70 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.15 2.20 7.17 -52.49 -0.38 1.82 16 28 H 0.05 0.56 7.89 -51.93 -0.41 0.15 16 29 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.35 6.19 6.87 -39.29 -0.27 5.92 16 32 H 0.09 1.44 7.44 -51.93 -0.39 1.05 16 33 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 34 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.67 6.85 -51.93 -0.36 0.31 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -31.01 332.09 -8.48 -39.49 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.32 Total: 12.57 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.80 Total: -5.47 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.07 Total: -50.18 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.09 Total: -15.90 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.01 -8.48 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049507395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.043 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds