Wall clock time and date at job start Tue Mar 31 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38353 * 119.45785 * 2 1 4 4 C 1.38350 * 119.30375 * 179.97438 * 3 2 1 5 5 C 1.40046 * 118.28743 * 0.27226 * 4 3 2 6 6 C 1.47792 * 120.56217 * 179.72774 * 5 4 3 7 7 O 1.21561 * 119.99659 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99862 * 179.97438 * 6 5 4 9 9 C 1.39135 * 119.99748 * 175.71043 * 8 6 5 10 10 C 1.39505 * 119.83430 * 215.04572 * 9 8 6 11 11 C 1.36368 * 120.16604 * 179.71827 * 10 9 8 12 12 C 1.40875 * 119.82584 * 0.57868 * 11 10 9 13 13 C 1.41135 * 120.16115 * 179.67640 * 12 11 10 14 14 H 1.07998 * 120.00292 * 214.78903 * 13 12 11 15 15 C 1.39910 * 120.00073 * 34.79253 * 13 12 11 16 16 N 1.30870 * 119.99890 * 355.58542 * 15 13 12 17 17 Si 1.86799 * 120.00380 * 175.58318 * 15 13 12 18 18 H 1.48493 * 109.47212 * 89.99625 * 17 15 13 19 19 H 1.48498 * 109.47147 * 210.00126 * 17 15 13 20 20 H 1.48500 * 109.46854 * 329.99873 * 17 15 13 21 21 C 1.40887 * 119.68214 * 359.69474 * 12 11 10 22 22 C 1.36362 * 119.82626 * 0.02562 * 21 12 11 23 23 C 1.39555 * 118.87781 * 359.46053 * 5 4 3 24 24 N 1.31694 * 120.55593 * 0.55636 * 23 5 4 25 25 H 1.08999 * 109.47724 * 89.99812 * 1 2 3 26 26 H 1.09003 * 109.47481 * 210.00094 * 1 2 3 27 27 H 1.09004 * 109.46893 * 329.99335 * 1 2 3 28 28 H 1.07994 * 120.34989 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.85490 * 180.02562 * 4 3 2 30 30 H 0.96997 * 120.00629 * 355.71405 * 8 6 5 31 31 H 1.08000 * 119.92133 * 0.02562 * 10 9 8 32 32 H 1.07992 * 120.08473 * 180.25077 * 11 10 9 33 33 H 0.97002 * 120.00356 * 180.02562 * 16 15 13 34 34 H 1.07996 * 120.08542 * 179.97438 * 21 12 11 35 35 H 1.07993 * 119.91473 * 179.97438 * 22 21 12 36 36 H 1.08000 * 119.71775 * 180.27289 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2009 0.0005 5 6 4.2312 -0.0340 -0.0048 6 6 5.7078 -0.0967 -0.0105 7 8 6.3596 0.9294 -0.0111 8 7 6.3316 -1.2914 -0.0151 9 6 7.7184 -1.3517 -0.1106 10 6 8.3208 -2.3938 -0.8157 11 6 9.6792 -2.4564 -0.9185 12 6 10.4747 -1.4719 -0.3000 13 6 11.8814 -1.5335 -0.3961 14 1 12.4940 -1.2106 0.4326 15 6 12.4824 -2.0130 -1.5650 16 7 11.7419 -2.4848 -2.5355 17 14 14.3418 -1.9798 -1.7407 18 1 14.9107 -3.2501 -1.2233 19 1 14.7010 -1.8236 -3.1731 20 1 14.8919 -0.8391 -0.9652 21 6 9.8593 -0.4256 0.4152 22 6 8.4996 -0.3731 0.5045 23 6 3.4714 -1.2046 0.0011 24 7 2.1557 -1.1488 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 1.6443 2.1381 -0.0004 29 1 4.1273 2.1266 0.0010 30 1 5.8139 -2.1091 0.0481 31 1 7.7097 -3.1503 -1.2856 32 1 10.1440 -3.2615 -1.4680 33 1 12.1585 -2.8175 -3.3458 34 1 10.4629 0.3324 0.8922 35 1 8.0264 0.4281 1.0527 36 1 3.9667 -2.1644 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050683559.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:05 Heat of formation + Delta-G solvation = 19.108801 kcal Electronic energy + Delta-G solvation = -20223.395710 eV Core-core repulsion = 17058.032945 eV Total energy + Delta-G solvation = -3165.362765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71889 -39.26755 -37.23916 -34.57691 -33.43163 -32.80811 -32.44615 -29.65032 -29.22558 -27.94375 -25.04414 -23.93432 -22.94172 -21.55563 -20.84864 -19.87972 -17.92629 -17.32874 -16.94750 -16.11722 -15.72126 -15.17795 -15.01722 -14.89229 -14.35271 -13.93399 -13.61440 -13.32498 -13.08400 -12.70126 -12.59396 -12.55361 -12.25719 -12.13710 -11.72345 -11.39387 -11.17687 -11.04432 -10.75798 -10.19817 -10.05388 -9.82326 -9.51478 -9.45996 -9.19624 -9.12910 -8.92637 -7.57832 -6.90164 -6.64497 -4.36823 0.52472 1.05157 2.56711 3.00002 3.06517 3.08844 3.12614 3.24549 3.55207 3.82834 3.96417 3.98082 4.46910 4.67040 4.70005 4.72768 4.97149 5.11760 5.26625 5.29914 5.39281 5.61964 5.69832 5.88903 5.95899 6.16834 6.38676 6.41829 6.69584 6.88014 7.03773 7.16520 7.26344 7.60954 7.67964 7.69763 7.82165 8.03313 8.19609 8.28439 8.57285 8.66248 8.89949 8.96475 10.26396 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.051440 B = 0.003008 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.188489 B = 9306.077364 C = 9581.759587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.139 3.861 3 C -0.180 4.180 4 C -0.017 4.017 5 C -0.181 4.181 6 C 0.545 3.455 7 O -0.526 6.526 8 N -0.641 5.641 9 C -0.001 4.001 10 C -0.118 4.118 11 C -0.142 4.142 12 C 0.101 3.899 13 C -0.459 4.459 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.810 5.810 17 Si 0.916 3.084 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.206 4.206 22 C -0.083 4.083 23 C 0.136 3.864 24 N -0.488 5.488 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.395 0.605 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.278 0.722 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.828 2.051 2.951 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.002 3.998 3 C -0.199 4.199 4 C -0.043 4.043 5 C -0.186 4.186 6 C 0.331 3.669 7 O -0.403 6.403 8 N -0.284 5.284 9 C -0.093 4.093 10 C -0.138 4.138 11 C -0.162 4.162 12 C 0.099 3.901 13 C -0.490 4.490 14 H 0.095 0.905 15 C -0.146 4.146 16 N -0.437 5.437 17 Si 0.741 3.259 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.226 4.226 22 C -0.103 4.103 23 C -0.023 4.023 24 N -0.198 5.198 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.229 0.771 31 H 0.110 0.890 32 H 0.150 0.850 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.818 1.909 2.698 17.139 hybrid contribution 1.084 0.401 -0.312 1.197 sum -15.733 2.311 2.386 16.080 Atomic orbital electron populations 1.20763 0.88578 1.03661 1.03303 1.21507 0.97250 0.88406 0.92629 1.21951 0.94513 0.99480 1.03984 1.21759 0.93946 0.98173 0.90444 1.21146 0.94979 0.95461 1.07018 1.18007 0.86268 0.84331 0.78262 1.90765 1.66277 1.33836 1.49452 1.42869 1.06885 1.07460 1.71148 1.17241 0.79889 1.02812 1.09371 1.20321 0.95779 0.97953 0.99749 1.21197 0.91209 1.00419 1.03353 1.17743 0.93663 0.89082 0.89647 1.19512 0.91822 1.37277 1.00378 0.90543 1.25897 1.00685 0.92643 0.95397 1.69758 1.37136 1.31227 1.05610 0.86182 0.82033 0.79543 0.78147 1.19494 1.20284 1.18704 1.20811 0.93241 0.99977 1.08582 1.20399 0.93625 0.97658 0.98589 1.22979 0.89304 0.97651 0.92370 1.67519 1.09587 1.29145 1.13535 0.90116 0.90259 0.90511 0.84185 0.83420 0.77050 0.88968 0.84953 0.91083 0.88507 0.87451 0.82318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.16 36.00 0.37 -0.35 16 2 C 0.14 1.44 6.78 -82.51 -0.56 0.88 16 3 C -0.18 -1.77 9.72 -39.50 -0.38 -2.16 16 4 C -0.02 -0.21 9.72 -38.86 -0.38 -0.59 16 5 C -0.18 -2.55 5.89 -104.82 -0.62 -3.16 16 6 C 0.54 9.74 7.61 -12.35 -0.09 9.65 16 7 O -0.53 -11.35 13.84 5.31 0.07 -11.27 16 8 N -0.64 -11.32 5.25 -10.61 -0.06 -11.37 16 9 C 0.00 -0.02 6.30 -83.60 -0.53 -0.55 16 10 C -0.12 -2.67 9.90 -39.78 -0.39 -3.06 16 11 C -0.14 -3.62 8.61 -39.26 -0.34 -3.96 16 12 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 13 C -0.46 -12.19 9.02 -37.86 -0.34 -12.53 16 14 H 0.08 1.95 7.85 -52.49 -0.41 1.53 16 15 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 16 N -0.81 -20.98 10.60 55.55 0.59 -20.39 16 17 Si 0.92 18.92 29.56 -169.99 -5.03 13.90 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 21 C -0.21 -5.21 9.74 -39.26 -0.38 -5.59 16 22 C -0.08 -1.98 8.61 -39.78 -0.34 -2.32 16 23 C 0.14 1.67 10.71 -17.12 -0.18 1.49 16 24 N -0.49 -5.98 10.25 -9.13 -0.09 -6.08 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 28 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 29 H 0.15 1.79 7.74 -52.48 -0.41 1.38 16 30 H 0.39 5.42 6.89 -40.82 -0.28 5.14 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 33 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 34 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 35 H 0.11 2.53 6.22 -52.49 -0.33 2.20 16 36 H 0.16 1.59 6.43 -52.49 -0.34 1.25 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -31.02 312.66 -8.42 -39.44 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -3.75 Total: 9.56 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -4.86 Total: -18.49 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.44 Total: -37.84 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.02 -8.42 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050683559.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.544 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds