Wall clock time and date at job start Tue Mar 31 2020 05:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86798 * 119.99920 * 2 1 4 4 H 1.48496 * 109.47294 * 240.00112 * 3 2 1 5 5 H 1.48506 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47332 * 119.99838 * 3 2 1 7 7 C 1.40226 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99930 * 197.86401 * 7 2 1 9 9 C 1.41106 * 120.00223 * 17.86840 * 7 2 1 10 10 C 1.40888 * 120.10265 * 204.63164 * 9 7 2 11 11 C 1.36319 * 119.88966 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10789 * 0.02562 * 11 10 9 13 13 C 1.47637 * 119.89593 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00047 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00145 * 180.27537 * 13 12 11 16 16 C 1.46492 * 120.00156 * 179.72425 * 15 13 12 17 17 C 1.50697 * 109.47178 * 179.97438 * 16 15 13 18 18 C 1.38647 * 120.79323 * 269.72187 * 17 16 15 19 19 C 1.38203 * 119.16204 * 179.80004 * 18 17 16 20 20 N 1.31870 * 120.76757 * 0.48639 * 19 18 17 21 21 C 1.31871 * 121.72241 * 359.74236 * 20 19 18 22 22 C 1.38207 * 120.76241 * 0.02574 * 21 20 19 23 23 C 1.40014 * 120.20837 * 0.23521 * 12 11 10 24 24 C 1.36318 * 120.10704 * 359.48115 * 23 12 11 25 25 H 0.97003 * 119.99934 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.05650 * 359.97438 * 10 9 7 27 27 H 1.07994 * 119.94863 * 179.97438 * 11 10 9 28 28 H 0.96998 * 119.99334 * 359.73044 * 15 13 12 29 29 H 1.09004 * 109.47563 * 300.00731 * 16 15 13 30 30 H 1.09006 * 109.47246 * 60.00551 * 16 15 13 31 31 H 1.08003 * 120.42001 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.61673 * 180.20965 * 19 18 17 33 33 H 1.07994 * 119.61809 * 179.97438 * 21 20 19 34 34 H 1.08007 * 120.41423 * 179.97438 * 22 21 20 35 35 H 1.07994 * 119.94676 * 179.71569 * 23 12 11 36 36 H 1.07994 * 120.05532 * 180.23415 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6965 -1.2125 5 1 1.2754 2.7465 0.0006 6 1 3.0942 1.6965 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0486 -1.2368 0.2875 9 6 1.3532 -2.4071 -0.3739 10 6 1.8269 -3.6494 0.0924 11 6 1.1917 -4.7990 -0.2724 12 6 0.0705 -4.7467 -1.1096 13 6 -0.6135 -5.9947 -1.5022 14 8 -0.2035 -7.0657 -1.0984 15 7 -1.6896 -5.9472 -2.3124 16 6 -2.3647 -7.1860 -2.7069 17 6 -3.5283 -6.8593 -3.6070 18 6 -4.7894 -6.6260 -3.0803 19 6 -5.8317 -6.3250 -3.9365 20 7 -5.6391 -6.2680 -5.2398 21 6 -4.4547 -6.4887 -5.7760 22 6 -3.3645 -6.7906 -4.9821 23 6 -0.4006 -3.5149 -1.5799 24 6 0.2245 -2.3595 -1.2158 25 1 -0.4850 0.8401 0.0004 26 1 2.6923 -3.6908 0.7371 27 1 1.5542 -5.7517 0.0841 28 1 -2.0168 -5.0927 -2.6344 29 1 -1.6630 -7.8289 -3.2384 30 1 -2.7274 -7.7013 -1.8175 31 1 -4.9544 -6.6752 -2.0141 32 1 -6.8164 -6.1386 -3.5338 33 1 -4.3355 -6.4336 -6.8479 34 1 -2.3970 -6.9707 -5.4272 35 1 -1.2630 -3.4798 -2.2291 36 1 -0.1419 -1.4096 -1.5760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:49 Heat of formation + Delta-G solvation = 8.108844 kcal Electronic energy + Delta-G solvation = -20139.724042 eV Core-core repulsion = 16973.884284 eV Total energy + Delta-G solvation = -3165.839759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39821 -39.04646 -37.18029 -35.06670 -33.91125 -32.33180 -31.39598 -30.21425 -29.48259 -27.16050 -25.46675 -23.64344 -22.42643 -21.66701 -20.92211 -19.70843 -17.59953 -17.43961 -16.57712 -16.25498 -15.71968 -15.69602 -15.26462 -14.48103 -14.08819 -14.02622 -13.82506 -13.75683 -13.26876 -12.78559 -12.61818 -12.50597 -12.11363 -11.95646 -11.70131 -11.38704 -11.29386 -11.02012 -10.68388 -10.15088 -9.99747 -9.68780 -9.59429 -9.38325 -9.34777 -9.00370 -8.72507 -7.76394 -7.58737 -7.07322 -4.64333 0.94380 0.96216 2.18532 2.89891 2.92168 2.96051 2.99948 3.50378 3.70778 3.81263 3.95237 4.27091 4.41209 4.50714 4.60343 4.90746 4.94933 5.38524 5.38865 5.53613 5.58455 5.62768 5.78183 5.99326 6.04780 6.18020 6.27862 6.49149 6.72974 6.78804 6.80408 7.00027 7.09235 7.39294 7.60279 7.74237 7.76396 7.81893 8.02997 8.14638 8.35770 8.59067 8.71220 8.98576 9.84584 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.003500 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.215495 B = 7998.547047 C = 8969.793431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.286 4.286 13 C 0.573 3.427 14 O -0.574 6.574 15 N -0.738 5.738 16 C 0.162 3.838 17 C -0.056 4.056 18 C -0.155 4.155 19 C 0.096 3.904 20 N -0.485 5.485 21 C 0.096 3.904 22 C -0.155 4.155 23 C -0.062 4.062 24 C -0.178 4.178 25 H 0.288 0.712 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.399 0.601 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.661 -5.435 -7.203 11.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.040 4.040 12 C -0.291 4.291 13 C 0.368 3.632 14 O -0.456 6.456 15 N -0.392 5.392 16 C 0.038 3.962 17 C -0.065 4.065 18 C -0.175 4.175 19 C -0.061 4.061 20 N -0.194 5.194 21 C -0.061 4.061 22 C -0.176 4.176 23 C -0.081 4.081 24 C -0.197 4.197 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.234 0.766 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.294 -5.851 -7.441 12.586 hybrid contribution 0.755 1.008 0.440 1.334 sum -7.539 -4.843 -7.001 11.371 Atomic orbital electron populations 1.69734 1.07936 1.30228 1.31465 1.26108 0.94818 1.01919 0.91861 0.86251 0.80214 0.79385 0.80382 1.18439 1.20015 1.18629 1.19841 0.98448 0.91210 1.37450 0.89681 1.17784 0.90342 0.92174 0.87101 1.20719 1.04640 0.92628 1.07891 1.20357 0.92850 0.97165 0.93602 1.18850 1.04643 0.90874 1.14699 1.18616 0.78407 0.89740 0.76407 1.90640 1.66372 1.31709 1.56911 1.45917 1.32186 1.08440 1.52703 1.20061 0.90933 0.88278 0.96896 1.20446 0.95162 0.96463 0.94404 1.22169 0.93206 1.00320 1.01834 1.22786 0.99242 0.95253 0.88788 1.67677 1.24830 1.12936 1.14006 1.22782 0.87846 0.94942 1.00537 1.22162 1.00908 1.00730 0.93774 1.20461 0.97327 0.92617 0.97718 1.20975 0.99942 0.96892 1.01937 0.90120 0.88333 0.88074 0.76595 0.90715 0.90722 0.84452 0.82607 0.82627 0.84476 0.89457 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.26 10.95 55.56 0.61 -17.65 16 2 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 3 Si 0.91 17.05 29.60 -169.99 -5.03 12.02 16 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 5 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.44 -10.87 9.04 -37.75 -0.34 -11.21 16 8 H 0.09 1.99 7.91 -52.48 -0.42 1.57 16 9 C 0.13 3.25 5.58 -106.80 -0.60 2.66 16 10 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 11 C -0.02 -0.48 9.52 -39.61 -0.38 -0.85 16 12 C -0.29 -6.44 5.89 -104.73 -0.62 -7.06 16 13 C 0.57 11.89 7.76 -12.42 -0.10 11.80 16 14 O -0.57 -13.34 16.32 5.29 0.09 -13.26 16 15 N -0.74 -11.97 5.50 -62.50 -0.34 -12.31 16 16 C 0.16 2.16 5.85 -5.20 -0.03 2.13 16 17 C -0.06 -0.63 5.29 -104.32 -0.55 -1.19 16 18 C -0.15 -1.61 9.82 -39.44 -0.39 -2.00 16 19 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 20 N -0.49 -5.64 10.36 -13.25 -0.14 -5.78 16 21 C 0.10 0.97 11.18 -17.55 -0.20 0.78 16 22 C -0.16 -1.60 9.82 -39.44 -0.39 -1.99 16 23 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 24 C -0.18 -4.32 8.64 -39.27 -0.34 -4.66 16 25 H 0.29 6.14 8.29 -40.82 -0.34 5.81 16 26 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 27 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 28 H 0.40 6.00 6.46 -40.82 -0.26 5.74 16 29 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 31 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.09 1.64 6.37 -52.49 -0.33 1.30 16 36 H 0.12 2.95 6.16 -52.49 -0.32 2.62 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -28.88 317.28 -8.82 -37.70 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -3.83 Total: 11.51 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -4.96 Total: -17.01 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.13 Total: -35.74 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.88 -8.82 -37.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.811 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds