Wall clock time and date at job start Tue Mar 31 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48509 * 109.46965 * 87.22186 * 3 2 1 5 5 H 1.48499 * 109.47061 * 207.21814 * 3 2 1 6 6 H 1.48502 * 109.47123 * 327.22284 * 3 2 1 7 7 C 1.40267 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 10.51043 * 7 2 1 9 9 C 1.40891 * 120.00197 * 190.50733 * 7 2 1 10 10 C 1.40711 * 120.32596 * 36.33258 * 9 7 2 11 11 C 1.37597 * 119.87929 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57318 * 359.97438 * 11 10 9 13 13 C 1.38228 * 120.67423 * 0.02562 * 12 11 10 14 14 C 1.39222 * 120.09079 * 359.71805 * 13 12 11 15 15 C 1.47433 * 120.27950 * 180.27937 * 14 13 12 16 16 O 1.21617 * 119.99806 * 175.66724 * 15 14 13 17 17 N 1.34775 * 120.00159 * 355.67294 * 15 14 13 18 18 C 1.46504 * 120.00020 * 179.97438 * 17 15 14 19 19 C 1.50693 * 109.47206 * 179.97438 * 18 17 15 20 20 C 1.38685 * 120.42026 * 269.72559 * 19 18 17 21 21 C 1.38627 * 118.41892 * 179.78298 * 20 19 18 22 22 C 1.38230 * 119.16162 * 0.51211 * 21 20 19 23 23 N 1.31851 * 120.76013 * 359.72685 * 22 21 20 24 24 C 1.31885 * 121.73306 * 359.97438 * 23 22 21 25 25 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.05741 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 28 28 H 1.08003 * 119.66168 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.95020 * 180.02562 * 13 12 11 30 30 H 0.97001 * 120.00277 * 0.02562 * 17 15 14 31 31 H 1.08992 * 109.47032 * 300.00420 * 18 17 15 32 32 H 1.09004 * 109.46511 * 59.99738 * 18 17 15 33 33 H 1.08004 * 120.78451 * 0.02562 * 20 19 18 34 34 H 1.07998 * 120.41514 * 180.21936 * 21 20 19 35 35 H 1.07994 * 119.61476 * 179.75124 * 22 21 20 36 36 H 1.07999 * 119.61898 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4290 2.0804 1.3985 5 1 3.5660 1.4239 -0.6404 6 1 1.4683 2.6350 -0.7580 7 6 2.0076 -1.2147 0.0005 8 1 1.4812 -2.1423 -0.1697 9 6 3.3988 -1.2249 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3394 -0.3386 1.3415 12 6 6.1467 -1.2423 0.6643 13 6 5.6008 -2.1406 -0.2334 14 6 4.2277 -2.1507 -0.4631 15 6 3.6403 -3.1111 -1.4150 16 8 2.4334 -3.1692 -1.5533 17 7 4.4407 -3.9247 -2.1317 18 6 3.8569 -4.8795 -3.0772 19 6 4.9579 -5.6623 -3.7450 20 6 5.5260 -5.2078 -4.9257 21 6 6.5391 -5.9583 -5.5020 22 6 6.9392 -7.1317 -4.8907 23 7 6.3728 -7.5358 -3.7707 24 6 5.4106 -6.8446 -3.1914 25 1 -0.4850 0.8401 -0.0004 26 1 3.3593 0.3859 1.6626 27 1 5.7824 0.3567 2.0391 28 1 7.2124 -1.2430 0.8399 29 1 6.2398 -2.8388 -0.7535 30 1 5.4032 -3.8788 -2.0211 31 1 3.1973 -5.5630 -2.5427 32 1 3.2857 -4.3396 -3.8326 33 1 5.1897 -4.2891 -5.3832 34 1 7.0066 -5.6326 -6.4195 35 1 7.7251 -7.7241 -5.3355 36 1 4.9709 -7.2072 -2.2740 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:48 Heat of formation + Delta-G solvation = 21.095278 kcal Electronic energy + Delta-G solvation = -20703.900881 eV Core-core repulsion = 17538.624256 eV Total energy + Delta-G solvation = -3165.276625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37769 -39.00269 -37.06891 -34.79210 -33.66136 -32.44928 -31.58793 -30.48327 -29.91818 -26.49458 -25.16814 -23.71650 -22.60916 -21.92950 -20.90277 -19.58770 -17.69430 -17.28708 -16.78964 -16.53389 -15.50294 -15.40403 -14.89159 -14.22367 -14.12662 -14.11522 -13.94440 -13.50681 -13.25580 -13.17257 -12.69608 -12.48630 -12.36891 -11.95284 -11.64623 -11.46360 -10.96180 -10.72761 -10.47076 -10.23933 -10.00941 -9.83115 -9.62611 -9.31203 -9.27160 -8.50633 -8.47063 -7.84502 -7.61549 -6.92416 -4.51056 0.87053 1.09404 2.07522 2.58140 3.06869 3.15536 3.26768 3.53181 3.91959 3.97824 4.06769 4.27305 4.56640 4.63615 4.66812 4.83292 4.86971 5.26682 5.37014 5.48687 5.71208 5.73858 5.79236 5.91312 5.96021 6.07020 6.17880 6.36187 6.48529 6.50759 6.76991 6.99124 7.07269 7.20442 7.36900 7.56567 7.72843 7.78253 7.99069 8.25476 8.45379 8.61335 8.84036 9.30288 10.04218 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.004247 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.722385 B = 6591.153558 C = 7202.040802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.243 1.243 6 H -0.289 1.289 7 C -0.402 4.402 8 H 0.125 0.875 9 C 0.117 3.883 10 C -0.225 4.225 11 C -0.065 4.065 12 C -0.254 4.254 13 C -0.041 4.041 14 C -0.250 4.250 15 C 0.562 3.438 16 O -0.527 6.527 17 N -0.745 5.745 18 C 0.169 3.831 19 C -0.149 4.149 20 C -0.059 4.059 21 C -0.176 4.176 22 C 0.097 3.903 23 N -0.487 5.487 24 C 0.115 3.885 25 H 0.287 0.713 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.392 0.608 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.087 -6.752 -7.852 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.166 1.166 6 H -0.216 1.216 7 C -0.429 4.429 8 H 0.142 0.858 9 C 0.113 3.887 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.274 4.274 13 C -0.060 4.060 14 C -0.255 4.255 15 C 0.355 3.645 16 O -0.404 6.404 17 N -0.401 5.401 18 C 0.044 3.956 19 C -0.151 4.151 20 C -0.085 4.085 21 C -0.195 4.195 22 C -0.061 4.061 23 N -0.195 5.195 24 C -0.042 4.042 25 H 0.098 0.902 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.226 0.774 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.154 -7.488 -7.585 14.721 hybrid contribution 0.561 1.629 -0.386 1.766 sum 10.715 -5.859 -7.971 14.584 Atomic orbital electron populations 1.69568 1.08218 1.30373 1.33384 1.26381 0.94868 1.01651 0.91257 0.86394 0.81320 0.79791 0.79232 1.19390 1.16573 1.21579 1.20209 0.90863 0.96640 1.35144 0.85803 1.17543 0.93129 0.89445 0.88619 1.21159 0.94702 1.04981 1.03599 1.20742 0.93737 0.96655 0.97220 1.20288 0.97889 1.03136 1.06059 1.20773 0.93548 0.95989 0.95647 1.19373 0.92730 1.07025 1.06354 1.18375 0.86216 0.79931 0.79961 1.90738 1.14161 1.68602 1.66894 1.46053 1.10031 1.39986 1.44031 1.19936 0.92259 0.91082 0.92300 1.21072 0.99727 0.97500 0.96803 1.21629 0.93915 0.98960 0.94012 1.22163 0.98767 0.96759 1.01843 1.22802 0.97716 0.94087 0.91445 1.67735 1.08789 1.33110 1.09907 1.22798 0.92105 0.90752 0.98563 0.90230 0.87752 0.88553 0.88542 0.88799 0.77357 0.90761 0.90909 0.84529 0.84724 0.82845 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.38 13.92 55.56 0.77 -20.60 16 2 C 0.08 2.09 5.47 -17.30 -0.09 2.00 16 3 Si 0.91 20.55 24.51 -169.99 -4.17 16.39 16 4 H -0.27 -5.78 6.76 56.52 0.38 -5.40 16 5 H -0.24 -5.63 6.72 56.52 0.38 -5.25 16 6 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.40 -11.18 8.31 -37.82 -0.31 -11.49 16 8 H 0.12 3.81 5.96 -52.48 -0.31 3.50 16 9 C 0.12 2.99 5.03 -106.54 -0.54 2.46 16 10 C -0.23 -5.29 7.00 -38.88 -0.27 -5.56 16 11 C -0.06 -1.34 10.01 -39.60 -0.40 -1.74 16 12 C -0.25 -4.96 10.03 -39.37 -0.39 -5.36 16 13 C -0.04 -0.80 9.52 -39.22 -0.37 -1.18 16 14 C -0.25 -5.78 5.92 -104.37 -0.62 -6.40 16 15 C 0.56 12.45 7.72 -12.52 -0.10 12.35 16 16 O -0.53 -13.67 13.53 5.26 0.07 -13.60 16 17 N -0.75 -12.43 5.50 -62.56 -0.34 -12.78 16 18 C 0.17 2.39 5.83 -5.20 -0.03 2.36 16 19 C -0.15 -1.74 5.27 -104.48 -0.55 -2.29 16 20 C -0.06 -0.60 9.86 -39.27 -0.39 -0.99 16 21 C -0.18 -1.55 10.11 -39.44 -0.40 -1.95 16 22 C 0.10 0.93 11.18 -17.55 -0.20 0.74 16 23 N -0.49 -5.85 10.36 -13.26 -0.14 -5.99 16 24 C 0.12 1.35 10.86 -17.55 -0.19 1.16 16 25 H 0.29 6.95 8.29 -40.82 -0.34 6.61 16 26 H 0.10 2.41 5.00 -52.49 -0.26 2.15 16 27 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 29 H 0.09 1.52 6.42 -52.49 -0.34 1.18 16 30 H 0.39 5.74 6.51 -40.82 -0.27 5.48 16 31 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 32 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 33 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 307.29 15.07 4.63 4.63 Total: -1.00 -30.88 307.29 -7.75 -38.63 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -3.73 Total: 9.20 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -4.85 Total: -15.88 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.29 Total: -39.37 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.07 Total: -13.60 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.17 Total: 16.39 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.88 -7.75 -38.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.727 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds