Wall clock time and date at job start Tue Mar 31 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47415 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47275 * 120.00128 * 3 2 1 6 6 H 1.48501 * 109.47305 * 240.00164 * 3 2 1 7 7 C 1.40273 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00194 * 160.73886 * 7 2 1 9 9 C 1.40891 * 119.99571 * 340.74281 * 7 2 1 10 10 C 1.40712 * 120.32906 * 325.79352 * 9 7 2 11 11 C 1.37601 * 119.87956 * 179.97438 * 10 9 7 12 12 C 1.38824 * 120.57302 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67578 * 0.02562 * 12 11 10 14 14 C 1.39235 * 120.09183 * 359.69536 * 13 12 11 15 15 C 1.47435 * 120.28378 * 180.28231 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.67695 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.68142 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47597 * 179.97438 * 18 17 15 20 20 C 1.38225 * 119.61757 * 94.99508 * 19 18 17 21 21 C 1.38634 * 119.15791 * 179.97438 * 20 19 18 22 22 C 1.38670 * 118.41938 * 0.02562 * 21 20 19 23 23 C 1.38173 * 119.16732 * 359.97438 * 22 21 20 24 24 N 1.31861 * 119.61665 * 274.73084 * 19 18 17 25 25 H 0.97003 * 120.00071 * 174.83473 * 1 2 3 26 26 H 1.07997 * 120.05467 * 359.95598 * 10 9 7 27 27 H 1.08002 * 119.70941 * 180.02562 * 11 10 9 28 28 H 1.07988 * 119.66507 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.95864 * 179.97438 * 13 12 11 30 30 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 31 31 H 1.09004 * 109.47039 * 299.99900 * 18 17 15 32 32 H 1.09005 * 109.47040 * 59.99578 * 18 17 15 33 33 H 1.07993 * 120.42325 * 359.96338 * 20 19 18 34 34 H 1.07997 * 120.78581 * 180.02562 * 21 20 19 35 35 H 1.08006 * 120.41555 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.62099 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2753 2.7465 0.0006 5 1 3.0941 1.6965 1.2125 6 1 3.0940 1.6965 -1.2125 7 6 2.0078 -1.2148 -0.0005 8 1 3.0424 -1.2408 -0.3091 9 6 1.3624 -2.4009 0.4014 10 6 0.3864 -2.3706 1.4145 11 6 -0.2385 -3.5346 1.7995 12 6 0.0855 -4.7425 1.1969 13 6 1.0414 -4.7994 0.2001 14 6 1.6870 -3.6377 -0.2151 15 6 2.7028 -3.6925 -1.2823 16 8 3.2197 -2.6672 -1.6829 17 7 3.0584 -4.8789 -1.8138 18 6 4.0681 -4.9334 -2.8738 19 6 4.2823 -6.3657 -3.2904 20 6 3.5905 -6.8726 -4.3744 21 6 3.7953 -8.1914 -4.7497 22 6 4.6919 -8.9545 -4.0170 23 6 5.3471 -8.3791 -2.9451 24 7 5.1315 -7.1194 -2.6198 25 1 -0.4850 -0.8367 -0.0756 26 1 0.1285 -1.4355 1.8893 27 1 -0.9875 -3.5080 2.5771 28 1 -0.4137 -5.6472 1.5107 29 1 1.2848 -5.7455 -0.2604 30 1 2.6458 -5.6966 -1.4946 31 1 3.7270 -4.3525 -3.7308 32 1 5.0059 -4.5188 -2.5039 33 1 2.8992 -6.2494 -4.9219 34 1 3.2691 -8.6143 -5.5926 35 1 4.8763 -9.9853 -4.2813 36 1 6.0473 -8.9666 -2.3696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:46 Heat of formation + Delta-G solvation = 13.847459 kcal Electronic energy + Delta-G solvation = -20675.678567 eV Core-core repulsion = 17510.087653 eV Total energy + Delta-G solvation = -3165.590914 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39548 -38.90778 -36.98351 -34.53962 -33.83244 -32.60583 -31.54564 -29.94459 -29.32245 -26.64067 -25.04953 -23.68174 -22.62639 -21.76745 -20.85236 -19.52798 -18.15217 -17.15183 -16.56201 -16.29330 -15.53976 -15.24864 -14.69496 -14.31427 -14.08422 -14.03909 -13.73609 -13.57513 -13.40086 -12.88742 -12.60668 -12.27624 -12.14523 -11.74524 -11.67458 -11.11719 -10.89840 -10.73480 -10.34843 -10.15889 -10.08859 -9.65798 -9.56947 -9.29982 -9.05905 -8.49025 -8.41054 -7.77855 -7.59287 -7.13383 -4.44902 0.85660 1.08680 2.25243 2.75303 3.22295 3.32935 3.42918 3.48613 4.03555 4.05869 4.07955 4.24027 4.56642 4.64188 4.65847 4.86601 4.94240 5.31759 5.46187 5.52038 5.63118 5.82660 5.88790 5.96161 6.03705 6.09136 6.19313 6.48926 6.50725 6.72935 6.99679 7.05402 7.28977 7.50628 7.61767 7.73413 7.83809 7.90108 8.10079 8.22390 8.36275 8.74485 8.87399 9.34762 10.05559 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021352 B = 0.004261 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.024365 B = 6569.234291 C = 7489.730128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.031 3.969 3 Si 1.071 2.929 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.467 4.467 8 H 0.106 0.894 9 C 0.122 3.878 10 C -0.201 4.201 11 C -0.075 4.075 12 C -0.260 4.260 13 C -0.042 4.042 14 C -0.265 4.265 15 C 0.566 3.434 16 O -0.536 6.536 17 N -0.741 5.741 18 C 0.176 3.824 19 C 0.118 3.882 20 C -0.155 4.155 21 C -0.077 4.077 22 C -0.175 4.175 23 C 0.098 3.902 24 N -0.470 5.470 25 H 0.298 0.702 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.392 0.608 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 -13.344 -6.938 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.190 4.190 3 Si 0.894 3.106 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.493 4.493 8 H 0.124 0.876 9 C 0.117 3.883 10 C -0.220 4.220 11 C -0.094 4.094 12 C -0.279 4.279 13 C -0.061 4.061 14 C -0.269 4.269 15 C 0.360 3.640 16 O -0.414 6.414 17 N -0.397 5.397 18 C 0.051 3.949 19 C -0.020 4.020 20 C -0.176 4.176 21 C -0.103 4.103 22 C -0.195 4.195 23 C -0.060 4.060 24 N -0.179 5.179 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.226 0.774 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.739 -10.544 -6.485 13.644 hybrid contribution -0.597 -2.865 -0.662 3.000 sum 5.142 -13.409 -7.146 16.041 Atomic orbital electron populations 1.70392 1.08248 1.34296 1.28756 1.27273 0.95684 1.04687 0.91372 0.83557 0.75533 0.73259 0.78281 1.19964 1.19946 1.19764 1.21190 1.01704 0.91915 1.34521 0.87642 1.17493 0.89692 0.91996 0.89104 1.21251 1.02993 0.97117 1.00620 1.20740 0.97638 0.93184 0.97856 1.20233 1.05897 0.96710 1.05057 1.20714 0.94789 0.95310 0.95324 1.19363 1.07854 0.95357 1.04370 1.18374 0.82028 0.81867 0.81740 1.90682 1.55353 1.32958 1.62422 1.45937 1.43473 1.09838 1.40430 1.19931 0.93947 0.89043 0.91978 1.21409 0.92249 0.96321 0.92041 1.22089 1.00654 0.96459 0.98384 1.21611 0.96232 0.93735 0.98759 1.22173 0.98483 1.01370 0.97431 1.22809 0.97455 0.91072 0.94632 1.67563 1.15447 1.05987 1.28915 0.88820 0.87503 0.88871 0.88930 0.89261 0.77390 0.90434 0.90266 0.84415 0.84724 0.84800 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.34 12.57 55.56 0.70 -20.64 16 2 C 0.03 0.82 5.04 -17.30 -0.09 0.73 16 3 Si 1.07 22.66 29.98 -169.99 -5.10 17.56 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.47 -12.93 7.65 -37.81 -0.29 -13.22 16 8 H 0.11 3.05 5.92 -52.49 -0.31 2.74 16 9 C 0.12 3.27 5.17 -106.54 -0.55 2.72 16 10 C -0.20 -5.04 7.87 -38.88 -0.31 -5.35 16 11 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 12 C -0.26 -5.53 10.03 -39.37 -0.39 -5.92 16 13 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 14 C -0.26 -6.54 5.92 -104.36 -0.62 -7.16 16 15 C 0.57 13.35 7.73 -12.52 -0.10 13.25 16 16 O -0.54 -14.28 13.56 5.27 0.07 -14.21 16 17 N -0.74 -13.76 5.50 -62.56 -0.34 -14.10 16 18 C 0.18 2.82 5.98 -5.20 -0.03 2.79 16 19 C 0.12 1.60 6.15 -82.59 -0.51 1.09 16 20 C -0.16 -1.72 9.72 -39.44 -0.38 -2.10 16 21 C -0.08 -0.69 10.18 -39.28 -0.40 -1.09 16 22 C -0.17 -1.49 10.11 -39.45 -0.40 -1.89 16 23 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 24 N -0.47 -6.50 10.27 -9.47 -0.10 -6.60 16 25 H 0.30 8.19 6.55 -40.82 -0.27 7.93 16 26 H 0.11 2.73 6.94 -52.49 -0.36 2.36 16 27 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 28 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.09 1.63 6.41 -52.49 -0.34 1.29 16 30 H 0.39 6.61 6.51 -40.82 -0.27 6.35 16 31 H 0.08 1.20 8.04 -51.93 -0.42 0.79 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -31.30 312.34 -8.81 -40.11 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -3.72 Total: 11.84 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -5.03 Total: -18.67 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.26 Total: -41.34 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.07 Total: -14.21 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.10 Total: 17.56 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.30 -8.81 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.959 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds