Wall clock time and date at job start Tue Mar 31 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31820 * 119.66792 * 2 1 4 4 C 1.31859 * 121.79900 * 179.97438 * 3 2 1 5 5 C 1.38284 * 120.92387 * 0.02562 * 4 3 2 6 6 C 1.38502 * 119.23609 * 0.27658 * 5 4 3 7 7 C 1.38866 * 119.67427 * 179.97438 * 2 1 3 8 8 N 1.39879 * 120.48566 * 0.04518 * 7 2 1 9 9 C 1.34778 * 119.99534 * 204.30989 * 8 7 2 10 10 O 1.21559 * 120.00565 * 5.63038 * 9 8 7 11 11 C 1.47858 * 119.99722 * 185.62861 * 9 8 7 12 12 C 1.39941 * 120.02364 * 359.72348 * 11 9 8 13 13 C 1.38322 * 120.35112 * 179.69413 * 12 11 9 14 14 C 1.37759 * 120.41678 * 0.60399 * 13 12 11 15 15 C 1.40754 * 120.03773 * 359.67589 * 14 13 12 16 16 C 1.41444 * 120.17270 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00017 * 34.87047 * 16 15 14 18 18 C 1.39929 * 119.99750 * 214.86820 * 16 15 14 19 19 N 1.30821 * 120.00430 * 355.25452 * 18 16 15 20 20 Si 1.86802 * 119.99808 * 175.25559 * 18 16 15 21 21 H 1.48494 * 109.47502 * 89.99636 * 20 18 16 22 22 H 1.48497 * 109.47171 * 209.99828 * 20 18 16 23 23 H 1.48504 * 109.46966 * 329.99584 * 20 18 16 24 24 C 1.39010 * 120.02638 * 179.97438 * 11 9 8 25 25 H 1.09007 * 109.47202 * 90.00324 * 1 2 3 26 26 H 1.09003 * 109.47121 * 209.99638 * 1 2 3 27 27 H 1.08994 * 109.47386 * 329.99994 * 1 2 3 28 28 H 1.07998 * 119.54107 * 180.02562 * 4 3 2 29 29 H 1.07997 * 120.38278 * 180.02562 * 5 4 3 30 30 H 1.07992 * 120.81835 * 179.69972 * 6 5 4 31 31 H 0.97000 * 120.00007 * 24.30377 * 8 7 2 32 32 H 1.07996 * 119.82318 * 0.02562 * 12 11 9 33 33 H 1.08001 * 119.79034 * 180.28583 * 13 12 11 34 34 H 1.07998 * 119.97975 * 179.69784 * 14 13 12 35 35 H 0.97003 * 120.00075 * 180.02562 * 19 18 16 36 36 H 1.07997 * 120.20504 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1594 1.1454 0.0000 4 6 3.4771 1.1944 0.0005 5 6 4.2313 0.0354 0.0005 6 6 3.5873 -1.1908 -0.0058 7 6 2.1944 -1.2065 0.0005 8 7 1.4984 -2.4199 0.0001 9 6 2.0855 -3.5336 0.4811 10 8 3.1787 -3.4653 1.0083 11 6 1.3999 -4.8387 0.3676 12 6 0.1388 -4.9171 -0.2340 13 6 -0.5060 -6.1354 -0.3495 14 6 0.0798 -7.2834 0.1371 15 6 1.3452 -7.2232 0.7506 16 6 1.9494 -8.4002 1.2507 17 1 1.8064 -9.3402 0.7386 18 6 2.7326 -8.3466 2.4091 19 7 2.9826 -7.1950 2.9771 20 14 3.4212 -9.9197 3.1445 21 1 4.7549 -10.1995 2.5547 22 1 3.5535 -9.7620 4.6152 23 1 2.5023 -11.0481 2.8484 24 6 2.0051 -5.9879 0.8630 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 3.9742 2.1532 0.0009 29 1 5.3101 0.0858 0.0013 30 1 4.1511 -2.1118 -0.0108 31 1 0.5932 -2.4597 -0.3462 32 1 -0.3311 -4.0225 -0.6150 33 1 -1.4770 -6.1862 -0.8196 34 1 -0.4321 -8.2301 0.0476 35 1 3.5258 -7.1578 3.7799 36 1 2.9766 -5.9315 1.3313 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073347808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:05 Heat of formation + Delta-G solvation = 17.528615 kcal Electronic energy + Delta-G solvation = -20787.082347 eV Core-core repulsion = 17621.651061 eV Total energy + Delta-G solvation = -3165.431287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74977 -39.03202 -37.20685 -34.93018 -33.74574 -32.89475 -31.18250 -29.76910 -29.53000 -27.45666 -25.43760 -24.11067 -22.36252 -21.80842 -21.02033 -19.74694 -18.22782 -17.34792 -16.35862 -16.13265 -15.72368 -15.22264 -14.85483 -14.62128 -14.20640 -14.03183 -13.69378 -13.28908 -13.09431 -12.75218 -12.62179 -12.47691 -12.28554 -11.91597 -11.78013 -11.23661 -11.18176 -10.86101 -10.75498 -10.53450 -10.16304 -9.86254 -9.72169 -9.44257 -9.32559 -8.96970 -8.06090 -7.74677 -7.52435 -6.73422 -4.55112 1.11428 1.39712 2.04114 2.72480 3.04032 3.05628 3.10088 3.30080 3.56833 3.89478 3.95590 4.37397 4.59159 4.78584 4.93582 5.18496 5.28483 5.42214 5.49151 5.52256 5.58824 5.63545 5.89027 6.00461 6.10001 6.16095 6.35247 6.43627 6.56929 6.80927 6.89308 6.96585 7.16003 7.25015 7.52211 7.55201 7.73744 7.89903 8.04149 8.08342 8.41194 8.57005 8.72732 8.76984 10.17448 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024356 B = 0.004191 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.340627 B = 6679.480785 C = 7596.247243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.086 3.914 3 N -0.466 5.466 4 C 0.067 3.933 5 C -0.155 4.155 6 C -0.092 4.092 7 C 0.119 3.881 8 N -0.669 5.669 9 C 0.564 3.436 10 O -0.520 6.520 11 C -0.139 4.139 12 C -0.205 4.205 13 C -0.104 4.104 14 C -0.194 4.194 15 C 0.093 3.907 16 C -0.463 4.463 17 H 0.080 0.920 18 C 0.069 3.931 19 N -0.803 5.803 20 Si 0.918 3.082 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.076 4.076 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.153 0.847 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.412 0.588 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.283 0.717 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 9.737 -4.857 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.055 4.055 3 N -0.176 5.176 4 C -0.092 4.092 5 C -0.175 4.175 6 C -0.120 4.120 7 C 0.020 3.980 8 N -0.315 5.315 9 C 0.357 3.643 10 O -0.396 6.396 11 C -0.142 4.142 12 C -0.225 4.225 13 C -0.123 4.123 14 C -0.214 4.214 15 C 0.091 3.909 16 C -0.493 4.493 17 H 0.098 0.902 18 C -0.148 4.148 19 N -0.429 5.429 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.096 4.096 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.170 0.830 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.250 0.750 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.377 10.552 -4.266 11.464 hybrid contribution 0.342 -1.399 0.310 1.473 sum -1.036 9.153 -3.956 10.025 Atomic orbital electron populations 1.20656 0.88924 1.03659 1.02929 1.20989 0.96842 0.86976 1.00658 1.67407 1.10235 1.27879 1.12060 1.22555 0.89321 0.98361 0.98935 1.22051 1.01413 0.92754 1.01293 1.21951 0.92942 1.00090 0.96995 1.18709 0.92522 0.86539 1.00204 1.43675 1.18787 1.06483 1.62506 1.19087 0.85225 0.84063 0.75907 1.90677 1.20858 1.86171 1.41935 1.19423 0.96534 0.91591 1.06638 1.20419 0.96445 0.96708 1.08929 1.20470 0.98373 0.92972 1.00462 1.21311 0.96094 0.96813 1.07189 1.17661 0.90229 0.93144 0.89873 1.19544 1.26293 0.95217 1.08286 0.90182 1.25932 0.94106 0.97861 0.96873 1.69702 1.29816 1.25592 1.17757 0.86147 0.79744 0.81488 0.78375 1.19358 1.20157 1.18630 1.21975 1.00666 0.90322 0.96661 0.90485 0.90924 0.90106 0.82967 0.84732 0.82516 0.74957 0.89111 0.88527 0.88249 0.90611 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 9.62 36.00 0.35 -0.81 16 2 C 0.09 1.25 6.80 -82.37 -0.56 0.69 16 3 N -0.47 -6.75 10.27 -9.31 -0.10 -6.84 16 4 C 0.07 0.85 11.18 -17.52 -0.20 0.65 16 5 C -0.15 -2.04 10.10 -39.47 -0.40 -2.44 16 6 C -0.09 -1.49 8.82 -39.09 -0.34 -1.83 16 7 C 0.12 1.92 6.43 -83.56 -0.54 1.38 16 8 N -0.67 -11.04 4.93 -10.61 -0.05 -11.09 16 9 C 0.56 11.72 7.59 -12.32 -0.09 11.63 16 10 O -0.52 -12.17 13.54 5.31 0.07 -12.09 16 11 C -0.14 -3.09 5.87 -105.04 -0.62 -3.70 16 12 C -0.21 -4.01 9.55 -38.91 -0.37 -4.38 16 13 C -0.10 -2.08 10.01 -39.73 -0.40 -2.48 16 14 C -0.19 -4.37 9.78 -38.81 -0.38 -4.75 16 15 C 0.09 2.37 5.55 -106.87 -0.59 1.77 16 16 C -0.46 -11.81 9.04 -37.73 -0.34 -12.16 16 17 H 0.08 1.94 7.85 -52.49 -0.41 1.52 16 18 C 0.07 1.70 5.42 -17.35 -0.09 1.61 16 19 N -0.80 -20.86 10.60 55.55 0.59 -20.27 16 20 Si 0.92 18.53 29.56 -169.99 -5.03 13.50 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 24 C -0.08 -1.94 8.21 -38.44 -0.32 -2.25 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.77 6.97 -51.93 -0.36 0.41 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.16 2.81 5.89 -52.49 -0.31 2.50 16 31 H 0.41 5.67 5.43 -40.82 -0.22 5.45 16 32 H 0.09 1.42 6.39 -52.49 -0.34 1.09 16 33 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 36 H 0.15 4.05 5.72 -52.49 -0.30 3.75 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -29.01 309.26 -8.36 -37.37 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -3.61 Total: 11.85 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -4.89 Total: -17.08 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.44 Total: -38.21 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.01 -8.36 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073347808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.900 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds