Wall clock time and date at job start Tue Mar 31 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31820 * 119.66792 * 2 1 4 4 C 1.31859 * 121.79900 * 179.97438 * 3 2 1 5 5 C 1.38284 * 120.92387 * 0.02562 * 4 3 2 6 6 C 1.38502 * 119.23609 * 0.27658 * 5 4 3 7 7 C 1.38866 * 119.67427 * 179.97438 * 2 1 3 8 8 N 1.39879 * 120.48566 * 0.04518 * 7 2 1 9 9 C 1.34778 * 119.99534 * 204.30989 * 8 7 2 10 10 O 1.21559 * 120.00565 * 5.63038 * 9 8 7 11 11 C 1.47858 * 119.99722 * 185.62861 * 9 8 7 12 12 C 1.39941 * 120.02364 * 359.72348 * 11 9 8 13 13 C 1.38322 * 120.35112 * 179.69413 * 12 11 9 14 14 C 1.37759 * 120.41678 * 0.60399 * 13 12 11 15 15 C 1.40754 * 120.03773 * 359.67589 * 14 13 12 16 16 C 1.41444 * 120.17270 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00017 * 34.87047 * 16 15 14 18 18 C 1.39929 * 119.99750 * 214.86820 * 16 15 14 19 19 N 1.30821 * 120.00430 * 355.25452 * 18 16 15 20 20 Si 1.86802 * 119.99808 * 175.25559 * 18 16 15 21 21 H 1.48494 * 109.47502 * 89.99636 * 20 18 16 22 22 H 1.48497 * 109.47171 * 209.99828 * 20 18 16 23 23 H 1.48504 * 109.46966 * 329.99584 * 20 18 16 24 24 C 1.39010 * 120.02638 * 179.97438 * 11 9 8 25 25 H 1.09007 * 109.47202 * 90.00324 * 1 2 3 26 26 H 1.09003 * 109.47121 * 209.99638 * 1 2 3 27 27 H 1.08994 * 109.47386 * 329.99994 * 1 2 3 28 28 H 1.07998 * 119.54107 * 180.02562 * 4 3 2 29 29 H 1.07997 * 120.38278 * 180.02562 * 5 4 3 30 30 H 1.07992 * 120.81835 * 179.69972 * 6 5 4 31 31 H 0.97000 * 120.00007 * 24.30377 * 8 7 2 32 32 H 1.07996 * 119.82318 * 0.02562 * 12 11 9 33 33 H 1.08001 * 119.79034 * 180.28583 * 13 12 11 34 34 H 1.07998 * 119.97975 * 179.69784 * 14 13 12 35 35 H 0.97003 * 120.00075 * 180.02562 * 19 18 16 36 36 H 1.07997 * 120.20504 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1594 1.1454 0.0000 4 6 3.4771 1.1944 0.0005 5 6 4.2313 0.0354 0.0005 6 6 3.5873 -1.1908 -0.0058 7 6 2.1944 -1.2065 0.0005 8 7 1.4984 -2.4199 0.0001 9 6 2.0855 -3.5336 0.4811 10 8 3.1787 -3.4653 1.0083 11 6 1.3999 -4.8387 0.3676 12 6 0.1388 -4.9171 -0.2340 13 6 -0.5060 -6.1354 -0.3495 14 6 0.0798 -7.2834 0.1371 15 6 1.3452 -7.2232 0.7506 16 6 1.9494 -8.4002 1.2507 17 1 1.8064 -9.3402 0.7386 18 6 2.7326 -8.3466 2.4091 19 7 2.9826 -7.1950 2.9771 20 14 3.4212 -9.9197 3.1445 21 1 4.7549 -10.1995 2.5547 22 1 3.5535 -9.7620 4.6152 23 1 2.5023 -11.0481 2.8484 24 6 2.0051 -5.9879 0.8630 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 3.9742 2.1532 0.0009 29 1 5.3101 0.0858 0.0013 30 1 4.1511 -2.1118 -0.0108 31 1 0.5932 -2.4597 -0.3462 32 1 -0.3311 -4.0225 -0.6150 33 1 -1.4770 -6.1862 -0.8196 34 1 -0.4321 -8.2301 0.0476 35 1 3.5258 -7.1578 3.7799 36 1 2.9766 -5.9315 1.3313 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073347808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:05 Heat of formation + Delta-G solvation = 0.621221 kcal Electronic energy + Delta-G solvation = -20787.815507 eV Core-core repulsion = 17621.651061 eV Total energy + Delta-G solvation = -3166.164446 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.04789 -40.45426 -38.89824 -36.35293 -35.52200 -33.96318 -32.67598 -31.37838 -31.11317 -28.49248 -27.23685 -25.52038 -23.71998 -23.04818 -22.71388 -21.31297 -19.77255 -18.86098 -17.80154 -17.40079 -17.06815 -16.82961 -16.44935 -16.00892 -15.77285 -15.30936 -15.05297 -14.79468 -14.52298 -14.36877 -14.05963 -13.58959 -13.36527 -13.21295 -12.94969 -12.87390 -12.82891 -12.54040 -12.22279 -12.08990 -11.93164 -11.57677 -11.21198 -11.07460 -10.59732 -10.28971 -9.61019 -9.31000 -9.16143 -8.53930 -6.45983 -0.10457 0.21314 0.44956 0.99640 1.37379 1.44657 1.52227 1.91469 1.97180 2.21151 2.75666 2.85069 3.40152 3.60750 3.70351 3.71615 4.02808 4.11654 4.33741 4.37924 4.52836 4.55326 4.67818 4.74377 4.85876 4.99312 5.07943 5.14150 5.14896 5.23038 5.24947 5.33394 5.48975 5.77103 5.81357 5.85225 6.06374 6.24875 6.34444 6.58884 6.89236 6.92537 6.94805 7.05360 8.37980 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024356 B = 0.004191 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.340627 B = 6679.480785 C = 7596.247243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.091 3.909 3 N -0.480 5.480 4 C 0.076 3.924 5 C -0.154 4.154 6 C -0.114 4.114 7 C 0.089 3.911 8 N -0.648 5.648 9 C 0.563 3.437 10 O -0.558 6.558 11 C -0.148 4.148 12 C -0.181 4.181 13 C -0.102 4.102 14 C -0.196 4.196 15 C 0.060 3.940 16 C -0.500 4.500 17 H 0.082 0.918 18 C 0.024 3.976 19 N -0.845 5.845 20 Si 0.988 3.012 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.253 1.253 24 C -0.114 4.114 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.191 0.809 29 H 0.162 0.838 30 H 0.130 0.870 31 H 0.426 0.574 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.113 0.887 35 H 0.282 0.718 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 11.509 -6.071 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.050 4.050 3 N -0.189 5.189 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.142 4.142 7 C -0.008 4.008 8 N -0.294 5.294 9 C 0.355 3.645 10 O -0.437 6.437 11 C -0.151 4.151 12 C -0.201 4.201 13 C -0.120 4.120 14 C -0.216 4.216 15 C 0.058 3.942 16 C -0.531 4.531 17 H 0.100 0.900 18 C -0.188 4.188 19 N -0.472 5.472 20 Si 0.809 3.191 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.176 1.176 24 C -0.135 4.135 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.208 0.792 29 H 0.179 0.821 30 H 0.148 0.852 31 H 0.267 0.733 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.131 0.869 35 H 0.093 0.907 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.371 12.359 -5.519 13.949 hybrid contribution 0.871 -1.698 0.541 1.984 sum -2.500 10.661 -4.977 12.028 Atomic orbital electron populations 1.20785 0.86495 1.04331 1.04598 1.21453 0.98469 0.86107 0.98951 1.67554 1.11080 1.27630 1.12675 1.23211 0.88955 0.99649 0.96373 1.22340 1.02931 0.91726 1.00354 1.21951 0.93510 1.00424 0.98342 1.18881 0.92641 0.86745 1.02579 1.43279 1.19053 1.05618 1.61461 1.18937 0.84804 0.84760 0.76011 1.90665 1.22494 1.86758 1.43809 1.19673 0.97732 0.91432 1.06260 1.20976 0.94607 0.98721 1.05780 1.20974 0.99921 0.91822 0.99276 1.21615 0.95162 0.98707 1.06130 1.17986 0.91801 0.93212 0.91209 1.19823 1.28201 0.95589 1.09477 0.89978 1.26817 0.94064 1.00953 0.96960 1.69857 1.31281 1.27721 1.18387 0.85104 0.79043 0.77530 0.77438 1.18969 1.19770 1.17608 1.21738 1.00242 0.92127 0.99362 0.88177 0.90428 0.89248 0.79182 0.82077 0.85227 0.73326 0.84186 0.83813 0.86918 0.90740 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 9.62 71.23 0.69 -1.29 16 2 C 0.09 2.41 6.80 42.71 0.29 2.71 16 3 N -0.48 -12.57 10.27 -183.38 -1.88 -14.45 16 4 C 0.08 1.71 11.18 84.70 0.95 2.66 16 5 C -0.15 -3.82 10.10 22.34 0.23 -3.60 16 6 C -0.11 -3.74 8.82 22.59 0.20 -3.54 16 7 C 0.09 2.79 6.43 38.26 0.25 3.04 16 8 N -0.65 -20.72 4.93 -305.76 -1.51 -22.23 16 9 C 0.56 23.90 7.59 86.79 0.66 24.56 16 10 O -0.56 -27.74 13.54 -3.90 -0.05 -27.79 16 11 C -0.15 -6.65 5.87 -20.13 -0.12 -6.77 16 12 C -0.18 -6.59 9.55 22.70 0.22 -6.37 16 13 C -0.10 -3.74 10.01 22.18 0.22 -3.52 16 14 C -0.20 -8.70 9.78 22.77 0.22 -8.48 16 15 C 0.06 3.16 5.55 -21.32 -0.12 3.04 16 16 C -0.50 -26.78 9.04 23.47 0.21 -26.56 16 17 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 18 C 0.02 1.24 5.42 85.25 0.46 1.70 16 19 N -0.84 -46.98 10.60 21.82 0.23 -46.74 16 20 Si 0.99 39.51 29.56 68.60 2.03 41.53 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 24 C -0.11 -6.14 8.21 23.01 0.19 -5.95 16 25 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.08 1.38 6.97 -2.39 -0.02 1.36 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 30 H 0.13 4.96 5.89 -2.91 -0.02 4.94 16 31 H 0.43 10.51 5.43 -92.71 -0.50 10.00 16 32 H 0.14 3.67 6.39 -2.91 -0.02 3.65 16 33 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 34 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 35 H 0.28 14.58 8.30 -92.71 -0.77 13.81 16 36 H 0.11 6.64 5.72 -2.91 -0.02 6.63 16 Total: -1.00 -68.68 309.26 3.98 -64.70 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.62 Total: 33.36 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 4.54 Total: -28.38 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -3.16 Total: -83.42 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.05 Total: -27.79 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.53 kcal Total: -68.68 3.98 -64.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073347808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.317 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds