Wall clock time and date at job start Tue Mar 31 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38279 * 120.38543 * 2 1 4 4 N 1.31861 * 120.92554 * 180.02562 * 3 2 1 5 5 C 1.31820 * 121.79265 * 359.65141 * 4 3 2 6 6 C 1.38860 * 120.66313 * 0.63361 * 5 4 3 7 7 N 1.39881 * 120.48794 * 179.67636 * 6 5 4 8 8 C 1.34777 * 119.99767 * 213.85627 * 7 6 5 9 9 O 1.21565 * 120.00262 * 5.23369 * 8 7 6 10 10 C 1.47853 * 119.99838 * 185.23061 * 8 7 6 11 11 C 1.39939 * 120.02486 * 0.04955 * 10 8 7 12 12 C 1.38321 * 120.35333 * 179.97438 * 11 10 8 13 13 C 1.37753 * 120.41644 * 359.97438 * 12 11 10 14 14 C 1.40750 * 120.04653 * 359.97438 * 13 12 11 15 15 C 1.41433 * 120.18060 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99700 * 152.17775 * 15 14 13 17 17 C 1.39936 * 119.99973 * 332.17697 * 15 14 13 18 18 N 1.30829 * 119.99591 * 163.97635 * 17 15 14 19 19 Si 1.86792 * 120.00129 * 343.97467 * 17 15 14 20 20 H 1.48501 * 109.47249 * 94.76693 * 19 17 15 21 21 H 1.48498 * 109.47205 * 214.77037 * 19 17 15 22 22 H 1.48506 * 109.47088 * 334.76975 * 19 17 15 23 23 C 1.39012 * 120.02774 * 180.02562 * 10 8 7 24 24 C 1.38502 * 120.38094 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47309 * 269.98345 * 1 2 3 26 26 H 1.09005 * 109.46578 * 29.97983 * 1 2 3 27 27 H 1.09000 * 109.47351 * 149.97808 * 1 2 3 28 28 H 1.07999 * 119.53574 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.66409 * 180.33542 * 5 4 3 30 30 H 0.96996 * 120.00096 * 33.86339 * 7 6 5 31 31 H 1.07997 * 119.82213 * 359.94707 * 11 10 8 32 32 H 1.08001 * 119.79006 * 179.97438 * 12 11 10 33 33 H 1.08008 * 119.98020 * 180.02562 * 13 12 11 34 34 H 0.97003 * 119.99599 * 179.97438 * 18 17 15 35 35 H 1.08000 * 120.19859 * 0.29370 * 23 10 8 36 36 H 1.08001 * 120.81703 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1929 0.0000 4 7 3.5249 1.2053 -0.0005 5 6 4.2300 0.0915 0.0058 6 6 3.5995 -1.1457 0.0000 7 7 4.3513 -2.3254 -0.0001 8 6 3.8987 -3.4128 -0.6550 9 8 2.8861 -3.3419 -1.3239 10 6 4.6337 -4.6922 -0.5600 11 6 5.7989 -4.7747 0.2106 12 6 6.4916 -5.9683 0.3047 13 6 6.0427 -7.0893 -0.3582 14 6 4.8722 -7.0259 -1.1373 15 6 4.4085 -8.1752 -1.8187 16 1 3.3552 -8.2907 -2.0279 17 6 5.3143 -9.1628 -2.2217 18 7 4.8802 -10.3493 -2.5613 19 14 7.1433 -8.7869 -2.2749 20 1 7.7749 -9.2202 -1.0027 21 1 7.7655 -9.5150 -3.4097 22 1 7.3435 -7.3264 -2.4545 23 6 4.1677 -5.8141 -1.2357 24 6 2.2074 -1.1948 -0.0005 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6651 2.1274 0.0004 29 1 5.3088 0.1418 0.0106 30 1 5.1983 -2.3607 0.4713 31 1 6.1594 -3.9018 0.7344 32 1 7.3900 -6.0217 0.9017 33 1 6.5889 -8.0178 -0.2795 34 1 5.5081 -11.0337 -2.8410 35 1 3.2713 -5.7538 -1.8351 36 1 1.6871 -2.1412 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079710547.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:26 Heat of formation + Delta-G solvation = 14.250436 kcal Electronic energy + Delta-G solvation = -20452.337113 eV Core-core repulsion = 17286.763674 eV Total energy + Delta-G solvation = -3165.573439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.80244 -39.26774 -37.49481 -35.03946 -33.81008 -33.63839 -31.30411 -30.30094 -29.57989 -27.43169 -25.42359 -24.32642 -23.03433 -21.79926 -20.80605 -20.17657 -18.34017 -17.16339 -16.82834 -16.56246 -16.26799 -15.63437 -14.78214 -14.63523 -14.23767 -14.13460 -13.78669 -13.56621 -13.11732 -12.90223 -12.86443 -12.82321 -12.68375 -12.20064 -11.92925 -11.77300 -11.18633 -10.91452 -10.80695 -10.66029 -10.08563 -9.95982 -9.76482 -9.53785 -9.34068 -9.14450 -8.31258 -7.98495 -7.89391 -7.10382 -4.66630 0.95973 1.23495 1.78280 2.40870 2.97362 3.10458 3.13156 3.17434 3.35786 3.78285 3.83874 4.36316 4.42565 4.68790 4.84879 4.91387 5.01607 5.19737 5.23863 5.39413 5.44319 5.62537 5.73258 5.81003 5.89237 6.04791 6.18904 6.23440 6.30266 6.52792 6.54202 6.78183 6.85545 7.06673 7.25111 7.35812 7.48653 7.63009 7.82750 7.88787 8.16508 8.35461 8.40769 8.59630 9.91339 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034421 B = 0.003613 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.265117 B = 7748.807626 C = 8310.458154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.117 4.117 3 C 0.069 3.931 4 N -0.463 5.463 5 C 0.061 3.939 6 C 0.117 3.883 7 N -0.672 5.672 8 C 0.566 3.434 9 O -0.526 6.526 10 C -0.110 4.110 11 C -0.219 4.219 12 C -0.079 4.079 13 C -0.223 4.223 14 C 0.081 3.919 15 C -0.436 4.436 16 H 0.095 0.905 17 C 0.081 3.919 18 N -0.800 5.800 19 Si 0.915 3.085 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.242 1.242 23 C -0.133 4.133 24 C -0.084 4.084 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.414 0.586 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.288 0.712 35 H 0.117 0.883 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 14.753 5.879 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C -0.089 4.089 4 N -0.171 5.171 5 C -0.099 4.099 6 C 0.019 3.981 7 N -0.319 5.319 8 C 0.358 3.642 9 O -0.403 6.403 10 C -0.113 4.113 11 C -0.239 4.239 12 C -0.097 4.097 13 C -0.242 4.242 14 C 0.078 3.922 15 C -0.464 4.464 16 H 0.113 0.887 17 C -0.139 4.139 18 N -0.423 5.423 19 Si 0.742 3.258 20 H -0.196 1.196 21 H -0.217 1.217 22 H -0.165 1.165 23 C -0.153 4.153 24 C -0.112 4.112 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.171 0.829 29 H 0.173 0.827 30 H 0.252 0.748 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.135 0.865 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.209 15.233 5.277 16.166 hybrid contribution 0.892 -0.984 0.187 1.341 sum -0.317 14.249 5.463 15.263 Atomic orbital electron populations 1.20730 0.90071 1.03338 1.02579 1.20848 0.97677 0.93411 0.99993 1.22538 0.89838 0.97379 0.99180 1.67593 1.08341 1.30007 1.11140 1.22543 1.00264 0.86260 1.00804 1.18862 0.91934 0.87417 0.99847 1.43565 1.24675 1.09931 1.53695 1.19012 0.84361 0.83663 0.77189 1.90724 1.25433 1.84636 1.39470 1.19271 0.97337 0.91805 1.02889 1.20356 0.98551 0.97691 1.07344 1.20492 0.98022 0.92901 0.98326 1.21168 1.01453 0.97901 1.03700 1.17686 0.91146 0.92223 0.91148 1.19576 0.97284 0.99221 1.30320 0.88740 1.26217 1.02343 0.93401 0.91948 1.69668 1.38794 1.02653 1.31225 0.86264 0.80910 0.81209 0.77443 1.19566 1.21737 1.16523 1.21242 1.01832 0.90863 1.01363 1.21569 0.92512 0.99421 0.97722 0.90856 0.91112 0.90990 0.82910 0.82677 0.74771 0.88521 0.88082 0.87848 0.90125 0.86536 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.04 36.00 0.36 -0.61 16 2 C -0.12 -1.40 5.89 -104.51 -0.62 -2.01 16 3 C 0.07 0.80 10.85 -17.52 -0.19 0.61 16 4 N -0.46 -6.12 10.35 -13.08 -0.14 -6.25 16 5 C 0.06 0.78 11.12 -17.33 -0.19 0.59 16 6 C 0.12 1.66 6.28 -83.56 -0.52 1.14 16 7 N -0.67 -9.79 5.29 -10.61 -0.06 -9.84 16 8 C 0.57 10.51 7.53 -12.33 -0.09 10.42 16 9 O -0.53 -11.10 14.12 5.31 0.07 -11.02 16 10 C -0.11 -2.22 5.87 -105.04 -0.62 -2.83 16 11 C -0.22 -3.99 9.55 -38.91 -0.37 -4.36 16 12 C -0.08 -1.54 10.01 -39.73 -0.40 -1.93 16 13 C -0.22 -4.99 7.05 -38.81 -0.27 -5.26 16 14 C 0.08 1.97 5.18 -106.87 -0.55 1.41 16 15 C -0.44 -11.36 9.59 -37.73 -0.36 -11.72 16 16 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 17 C 0.08 2.03 5.44 -17.34 -0.09 1.94 16 18 N -0.80 -20.54 13.93 55.55 0.77 -19.77 16 19 Si 0.91 19.76 24.40 -169.99 -4.15 15.62 16 20 H -0.27 -5.57 6.69 56.52 0.38 -5.20 16 21 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.24 -5.33 6.68 56.52 0.38 -4.95 16 23 C -0.13 -3.05 9.34 -38.44 -0.36 -3.41 16 24 C -0.08 -1.22 8.45 -39.09 -0.33 -1.55 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.41 4.86 6.86 -40.82 -0.28 4.58 16 31 H 0.10 1.37 6.39 -52.49 -0.34 1.04 16 32 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.10 2.30 4.27 -52.48 -0.22 2.07 16 34 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 35 H 0.12 2.72 7.64 -52.49 -0.40 2.32 16 36 H 0.15 2.29 6.58 -52.49 -0.35 1.95 16 LS Contribution 307.33 15.07 4.63 4.63 Total: -1.00 -28.68 307.33 -7.19 -35.87 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.72 Total: 8.35 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -4.61 Total: -17.58 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.58 Total: -35.86 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.15 Total: 15.62 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.68 -7.19 -35.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079710547.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.121 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds