Wall clock time and date at job start Tue Mar 31 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47388 * 316.67101 * 3 2 1 5 5 N 1.46502 * 109.47240 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99935 * 270.00357 * 5 4 3 7 7 C 1.50699 * 109.47093 * 269.99775 * 6 5 4 8 8 H 1.08001 * 119.99870 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00373 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99475 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00315 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46880 * 60.00527 * 11 9 7 13 13 H 1.48496 * 109.46981 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47168 * 300.00858 * 11 9 7 15 15 C 1.34773 * 119.99890 * 90.00254 * 5 4 3 16 16 O 1.21698 * 119.99880 * 180.02562 * 15 5 4 17 17 C 1.43199 * 120.00280 * 359.97438 * 15 5 4 18 18 C 4.66319 * 127.17760 * 249.52014 * 2 1 3 19 19 C 5.31542 * 113.29416 * 243.85914 * 2 1 3 20 20 C 1.39845 * 120.16631 * 129.07143 * 19 18 17 21 21 C 1.37890 * 119.82311 * 179.97438 * 20 19 18 22 22 C 1.38404 * 120.17220 * 359.97438 * 21 20 19 23 23 C 1.38399 * 120.34422 * 0.04383 * 22 21 20 24 24 C 1.37896 * 120.17483 * 359.95821 * 23 22 21 25 25 H 1.09001 * 109.47129 * 196.67071 * 3 2 1 26 26 H 1.09002 * 109.47227 * 76.67665 * 3 2 1 27 27 H 1.09005 * 109.46414 * 60.00331 * 4 3 2 28 28 H 1.08997 * 109.46959 * 300.00294 * 4 3 2 29 29 H 1.09008 * 109.47266 * 29.99872 * 6 5 4 30 30 H 1.08993 * 109.47315 * 150.00013 * 6 5 4 31 31 H 0.97001 * 119.99307 * 179.97438 * 10 9 7 32 32 H 1.07994 * 120.08628 * 359.69734 * 20 19 18 33 33 H 1.07999 * 119.91206 * 179.97438 * 21 20 19 34 34 H 1.07998 * 119.82754 * 180.02562 * 22 21 20 35 35 H 1.08001 * 119.91548 * 179.97438 * 23 22 21 36 36 H 1.07996 * 120.08823 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0484 0.9898 5 7 4.5836 -1.0473 0.9902 6 6 5.3170 -1.9172 0.0674 7 6 5.5690 -3.2491 0.7257 8 1 5.2176 -3.4298 1.7308 9 6 6.2473 -4.2376 0.0444 10 7 6.6747 -4.0177 -1.1798 11 14 6.5590 -5.8888 0.8602 12 1 5.2615 -6.5205 1.2108 13 1 7.3025 -6.7705 -0.0752 14 1 7.3611 -5.6880 2.0937 15 6 5.2566 -0.2461 1.8396 16 8 6.4735 -0.2448 1.8397 17 6 4.5397 0.6046 2.7413 18 6 3.9540 1.3000 3.4806 19 6 3.2381 2.1510 4.3828 20 6 1.9229 2.5305 4.0965 21 6 1.2399 3.3498 4.9704 22 6 1.8525 3.7959 6.1286 23 6 3.1539 3.4249 6.4186 24 6 3.8502 2.6061 5.5547 25 1 2.9709 0.9853 0.2948 26 1 2.9715 -0.2360 -1.0000 27 1 2.7556 -2.0331 0.6949 28 1 2.7551 -0.8117 1.9898 29 1 4.7282 -2.0649 -0.8381 30 1 6.2691 -1.4532 -0.1900 31 1 7.1522 -4.7129 -1.6588 32 1 1.4450 2.1865 3.1912 33 1 0.2244 3.6442 4.7505 34 1 1.3123 4.4370 6.8093 35 1 3.6254 3.7773 7.3241 36 1 4.8658 2.3178 5.7822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081584176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:37 Heat of formation + Delta-G solvation = 68.356762 kcal Electronic energy + Delta-G solvation = -19999.677018 eV Core-core repulsion = 16836.449806 eV Total energy + Delta-G solvation = -3163.227213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42170 -39.20217 -36.87626 -35.31415 -34.08429 -32.87109 -31.24007 -30.91609 -30.56607 -27.55231 -24.64902 -23.97310 -22.94294 -22.76080 -20.59254 -18.15441 -17.66084 -16.93715 -16.52590 -16.15428 -15.84569 -15.23449 -14.75165 -14.54930 -14.45926 -14.14656 -13.72567 -13.68921 -13.37985 -13.11148 -12.54115 -12.43115 -12.29343 -11.84703 -11.76251 -11.58934 -11.35201 -11.17659 -11.03376 -10.88942 -10.69944 -10.44971 -10.21377 -9.80317 -9.52747 -9.25350 -8.74825 -8.50191 -7.98121 -6.12492 -4.17629 0.56811 1.11934 2.13135 2.49238 2.74887 2.80409 3.29657 3.34300 3.35903 3.44522 3.50792 3.93147 4.13669 4.37429 4.46102 4.67223 4.68795 4.82146 5.02368 5.10630 5.13888 5.21200 5.25936 5.28743 5.46103 5.71965 5.74275 5.80425 6.04765 6.11902 6.19860 6.21425 6.63962 6.83563 7.23141 7.26940 7.35680 7.56182 7.83037 8.06769 8.11170 8.66236 8.87772 9.47997 10.95679 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016798 B = 0.003979 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.432422 B = 7035.934736 C = 8065.596379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.218 3.782 3 C -0.050 4.050 4 C 0.117 3.883 5 N -0.581 5.581 6 C 0.245 3.755 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.899 3.101 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.616 3.384 16 O -0.512 6.512 17 C -0.160 4.160 18 C -0.083 4.083 19 C 0.010 3.990 20 C -0.090 4.090 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.089 4.089 25 H 0.106 0.894 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.674 14.086 9.928 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.100 4.100 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.311 5.311 6 C 0.127 3.873 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.726 3.274 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.402 3.598 16 O -0.389 6.389 17 C -0.163 4.163 18 C -0.086 4.086 19 C 0.010 3.990 20 C -0.108 4.108 21 C -0.139 4.139 22 C -0.128 4.128 23 C -0.139 4.139 24 C -0.107 4.107 25 H 0.124 0.876 26 H 0.137 0.863 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.590 13.949 9.715 20.028 hybrid contribution 0.607 -0.959 0.399 1.203 sum -9.983 12.989 10.114 19.253 Atomic orbital electron populations 1.81204 1.12937 1.08946 1.09063 1.29055 0.95049 0.92960 0.92932 1.19876 0.81512 1.03080 1.04698 1.21343 0.81668 0.99471 0.98434 1.48122 1.05293 1.40180 1.37537 1.19477 0.92732 0.87974 0.87123 1.21373 1.37166 0.97494 1.01198 0.92225 1.24907 0.95137 0.98940 0.94855 1.69909 1.37976 1.34351 1.10880 0.86544 0.78448 0.83062 0.79324 1.20186 1.21145 1.20095 1.14801 0.85961 0.79252 0.79770 1.90887 1.12342 1.67031 1.68605 1.21229 0.97329 0.98954 0.98754 1.19143 0.98402 0.95707 0.95320 1.16059 0.92945 0.96958 0.93019 1.21314 0.92854 0.96942 0.99651 1.21095 1.00209 0.98044 0.94584 1.21332 0.95121 0.99282 0.97017 1.21103 0.94844 0.98298 0.99678 1.21379 1.00194 0.96346 0.92822 0.87575 0.86299 0.88277 0.90572 0.94078 0.93118 0.92504 0.85396 0.85438 0.85731 0.85398 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.57 18.54 42.16 0.78 -5.79 16 2 C 0.22 2.72 15.43 -20.76 -0.32 2.40 16 3 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 4 C 0.12 1.67 5.17 -4.04 -0.02 1.64 16 5 N -0.58 -11.05 2.46 -177.92 -0.44 -11.48 16 6 C 0.24 5.76 5.16 -5.19 -0.03 5.73 16 7 C -0.53 -14.17 9.39 -34.44 -0.32 -14.50 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 11 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.62 12.38 7.53 -14.34 -0.11 12.27 16 16 O -0.51 -12.52 16.67 5.19 0.09 -12.43 16 17 C -0.16 -2.64 11.69 -38.86 -0.45 -3.10 16 18 C -0.08 -1.19 13.23 -38.86 -0.51 -1.71 16 19 C 0.01 0.12 5.74 -106.77 -0.61 -0.49 16 20 C -0.09 -0.91 9.77 -39.11 -0.38 -1.29 16 21 C -0.12 -1.01 10.03 -39.65 -0.40 -1.41 16 22 C -0.11 -0.84 10.04 -39.46 -0.40 -1.24 16 23 C -0.12 -1.00 10.03 -39.65 -0.40 -1.40 16 24 C -0.09 -0.93 9.77 -39.11 -0.38 -1.31 16 25 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.10 1.44 8.07 -51.93 -0.42 1.02 16 28 H 0.08 1.00 6.89 -51.93 -0.36 0.64 16 29 H 0.04 0.94 8.07 -51.92 -0.42 0.52 16 30 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 339.42 15.07 5.12 5.12 Total: -1.00 -32.17 339.42 -7.44 -39.61 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.09 Total: -3.17 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -4.61 Total: -3.49 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 1.08 Total: -41.70 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.17 -7.44 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081584176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.967 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds