Wall clock time and date at job start Tue Mar 31 2020 05:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86798 * 120.00045 * 2 1 4 4 H 1.48500 * 109.47474 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47029 * 300.00044 * 3 2 1 6 6 H 1.48500 * 109.47230 * 59.99890 * 3 2 1 7 7 C 1.40118 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00654 * 180.02562 * 7 2 1 9 9 C 1.46172 * 119.99944 * 0.02562 * 7 2 1 10 10 O 1.21747 * 119.99689 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00404 * 179.97438 * 9 7 2 12 12 C 1.39525 * 119.99992 * 185.27485 * 11 9 7 13 13 C 1.39030 * 120.08198 * 213.68222 * 12 11 9 14 14 C 1.38062 * 119.91759 * 180.23253 * 13 12 11 15 15 C 1.38331 * 120.08257 * 359.47536 * 14 13 12 16 16 C 1.50695 * 119.91986 * 180.25483 * 15 14 13 17 17 C 1.50695 * 109.47168 * 89.99623 * 16 15 14 18 18 C 1.38653 * 120.79533 * 269.72402 * 17 16 15 19 19 C 1.38200 * 119.16440 * 179.79811 * 18 17 16 20 20 N 1.31866 * 120.76594 * 0.48979 * 19 18 17 21 21 C 1.31872 * 121.72756 * 359.73462 * 20 19 18 22 22 C 1.38207 * 120.76097 * 0.02787 * 21 20 19 23 23 C 1.38330 * 120.16510 * 0.27715 * 15 14 13 24 24 C 1.38068 * 120.08721 * 359.97438 * 23 15 14 25 25 H 0.97000 * 120.00282 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99670 * 5.27453 * 11 9 7 27 27 H 1.07998 * 120.04154 * 0.02562 * 13 12 11 28 28 H 1.07993 * 119.96245 * 179.75003 * 14 13 12 29 29 H 1.08996 * 109.47380 * 210.00169 * 16 15 14 30 30 H 1.09003 * 109.46932 * 330.00223 * 16 15 14 31 31 H 1.08001 * 120.41298 * 359.97438 * 18 17 16 32 32 H 1.07997 * 119.61891 * 180.20048 * 19 18 17 33 33 H 1.07995 * 119.62119 * 180.02562 * 21 20 19 34 34 H 1.08003 * 120.41979 * 179.97438 * 22 21 20 35 35 H 1.08005 * 119.95964 * 180.02562 * 23 15 14 36 36 H 1.08000 * 120.04520 * 180.02562 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0070 -1.2134 0.0005 8 1 3.0869 -1.2135 0.0010 9 6 1.2761 -2.4793 0.0005 10 8 0.0586 -2.4793 0.0005 11 7 1.9499 -3.6466 0.0005 12 6 1.2567 -4.8523 -0.1105 13 6 1.7224 -5.9869 0.5444 14 6 1.0364 -7.1793 0.4282 15 6 -0.1190 -7.2436 -0.3298 16 6 -0.8680 -8.5458 -0.4494 17 6 -1.8877 -8.6421 0.6560 18 6 -1.5626 -9.2210 1.8732 19 6 -2.5228 -9.2878 2.8650 20 7 -3.7378 -8.8179 2.6603 21 6 -4.0836 -8.2651 1.5141 22 6 -3.1751 -8.1590 0.4780 23 6 -0.5883 -6.1157 -0.9787 24 6 0.0952 -4.9208 -0.8715 25 1 -0.4850 0.8400 -0.0004 26 1 2.9169 -3.6484 0.0778 27 1 2.6215 -5.9362 1.1405 28 1 1.3997 -8.0620 0.9333 29 1 -1.3731 -8.5871 -1.4144 30 1 -0.1670 -9.3767 -0.3703 31 1 -0.5707 -9.6121 2.0451 32 1 -2.2765 -9.7343 3.8170 33 1 -5.0882 -7.8910 1.3836 34 1 -3.4644 -7.7055 -0.4586 35 1 -1.4909 -6.1696 -1.5693 36 1 -0.2721 -4.0405 -1.3780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082254987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:43 Heat of formation + Delta-G solvation = 13.165746 kcal Electronic energy + Delta-G solvation = -20367.461783 eV Core-core repulsion = 17201.841308 eV Total energy + Delta-G solvation = -3165.620475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23106 -39.19342 -37.20876 -34.59274 -33.06234 -32.43179 -31.21506 -30.35232 -29.88860 -27.02460 -25.54014 -23.51912 -22.51280 -22.20023 -21.01223 -19.68555 -17.59020 -16.70746 -16.36866 -16.30400 -15.60585 -15.56335 -15.10037 -14.60800 -14.02968 -13.87776 -13.68323 -13.39649 -13.23484 -12.99922 -12.62912 -12.59941 -12.16852 -11.67405 -11.49859 -11.35787 -11.21250 -11.12741 -10.70148 -10.54676 -10.33222 -9.54369 -9.49926 -9.23665 -9.15166 -8.89804 -8.43294 -7.78275 -7.06294 -6.38048 -4.85443 1.14215 1.24228 1.91468 1.98748 3.03803 3.12274 3.16664 3.81692 3.96431 4.16776 4.45347 4.49581 4.61388 4.70096 4.81060 5.08578 5.12928 5.17376 5.24303 5.47446 5.51149 5.58748 5.63156 5.76127 5.77456 5.93028 5.99652 6.18452 6.30998 6.39602 6.54703 6.70178 6.84714 7.05552 7.10548 7.25140 7.39494 7.70953 7.96980 8.03097 8.14917 8.81930 9.18318 10.35134 10.53420 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.003485 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.453628 B = 8033.615422 C = 8511.365688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.542 3.458 10 O -0.559 6.559 11 N -0.701 5.701 12 C 0.195 3.805 13 C -0.177 4.177 14 C -0.091 4.091 15 C -0.135 4.135 16 C -0.033 4.033 17 C -0.024 4.024 18 C -0.170 4.170 19 C 0.096 3.904 20 N -0.494 5.494 21 C 0.098 3.902 22 C -0.167 4.167 23 C -0.091 4.091 24 C -0.128 4.128 25 H 0.272 0.728 26 H 0.393 0.607 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 -15.822 -0.281 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.348 3.652 10 O -0.441 6.441 11 N -0.344 5.344 12 C 0.096 3.904 13 C -0.198 4.198 14 C -0.110 4.110 15 C -0.137 4.137 16 C -0.070 4.070 17 C -0.032 4.032 18 C -0.190 4.190 19 C -0.061 4.061 20 N -0.203 5.203 21 C -0.058 4.058 22 C -0.187 4.187 23 C -0.110 4.110 24 C -0.149 4.149 25 H 0.082 0.918 26 H 0.226 0.774 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.151 0.849 35 H 0.132 0.868 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.973 -15.634 0.382 15.762 hybrid contribution 1.598 1.002 -0.497 1.951 sum -0.375 -14.632 -0.115 14.637 Atomic orbital electron populations 1.69991 1.07178 1.27734 1.33785 1.25748 0.94704 1.00558 0.92495 0.86226 0.80450 0.81220 0.78408 1.18629 1.19956 1.19977 1.20898 0.93852 0.89010 1.53683 0.90944 1.18409 0.87505 0.82127 0.77120 1.90644 1.13671 1.86076 1.53683 1.44190 1.09664 1.04450 1.76057 1.18019 0.93404 0.86481 0.92473 1.20851 1.02892 0.93200 1.02876 1.20559 0.94968 0.96914 0.98557 1.19291 0.97132 0.94364 1.02873 1.19489 0.95401 0.95987 0.96167 1.20323 0.94250 0.93340 0.95313 1.22013 1.00998 1.01869 0.94109 1.22700 0.88709 0.95910 0.98733 1.67644 1.19531 1.10041 1.23119 1.22729 0.99762 0.94875 0.88460 1.22066 0.94080 1.01359 1.01224 1.20798 0.98915 0.92015 0.99263 1.21322 0.96205 0.98060 0.99268 0.91753 0.77376 0.86582 0.86959 0.90083 0.90171 0.85018 0.83048 0.82924 0.84854 0.86850 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.94 11.82 55.55 0.66 -21.29 16 2 C 0.09 2.31 5.50 -17.36 -0.10 2.22 16 3 Si 0.91 19.37 29.56 -169.99 -5.02 14.35 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -14.61 9.54 -35.69 -0.34 -14.95 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 9 C 0.54 14.94 7.47 -13.07 -0.10 14.85 16 10 O -0.56 -17.37 12.70 5.15 0.07 -17.31 16 11 N -0.70 -15.66 5.32 -11.20 -0.06 -15.72 16 12 C 0.20 4.05 6.28 -83.77 -0.53 3.52 16 13 C -0.18 -3.01 9.97 -39.35 -0.39 -3.41 16 14 C -0.09 -1.35 9.69 -39.61 -0.38 -1.74 16 15 C -0.14 -1.98 5.12 -104.56 -0.54 -2.52 16 16 C -0.03 -0.37 5.52 -29.04 -0.16 -0.53 16 17 C -0.02 -0.29 5.15 -104.32 -0.54 -0.83 16 18 C -0.17 -1.93 9.82 -39.44 -0.39 -2.31 16 19 C 0.10 1.14 11.18 -17.55 -0.20 0.94 16 20 N -0.49 -6.73 10.36 -13.26 -0.14 -6.87 16 21 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 22 C -0.17 -2.02 9.82 -39.44 -0.39 -2.40 16 23 C -0.09 -1.55 9.69 -39.61 -0.38 -1.93 16 24 C -0.13 -2.68 8.65 -39.35 -0.34 -3.02 16 25 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 26 H 0.39 7.48 8.80 -40.82 -0.36 7.12 16 27 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 28 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 30 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.14 3.32 6.42 -52.49 -0.34 2.98 16 LS Contribution 319.51 15.07 4.81 4.81 Total: -1.00 -33.89 319.51 -8.68 -42.57 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.04 Total: 10.55 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -4.96 Total: -11.10 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.46 Total: -43.88 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.07 Total: -17.31 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.89 -8.68 -42.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.734 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds