Wall clock time and date at job start Tue Mar 31 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35972 * 117.00352 * 2 1 4 4 C 1.38698 * 120.00053 * 180.02562 * 3 2 1 5 5 C 1.38133 * 119.99925 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.00046 * 359.97438 * 5 4 3 7 7 O 1.35986 * 120.00064 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99959 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46728 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.46997 * 180.02562 * 9 8 7 11 11 S 1.81399 * 109.47381 * 180.02562 * 10 9 8 12 12 C 1.81394 * 102.99924 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47206 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99886 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00252 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99662 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 119.99968 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.47334 * 90.00026 * 17 15 13 19 19 H 1.48500 * 109.47081 * 210.00194 * 17 15 13 20 20 H 1.48508 * 109.47291 * 329.99887 * 17 15 13 21 21 C 1.38699 * 120.00363 * 0.24959 * 6 5 4 22 22 C 1.38142 * 119.99254 * 359.49661 * 21 6 5 23 23 H 1.09001 * 109.46474 * 300.00207 * 1 2 3 24 24 H 1.08997 * 109.46754 * 60.00269 * 1 2 3 25 25 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 26 26 H 1.07993 * 119.99998 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.00006 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47187 * 300.00196 * 8 7 6 29 29 H 1.09001 * 109.46558 * 60.00244 * 8 7 6 30 30 H 1.09000 * 109.47486 * 300.00062 * 9 8 7 31 31 H 1.09001 * 109.47362 * 60.00784 * 9 8 7 32 32 H 1.09000 * 109.46866 * 300.00212 * 10 9 8 33 33 H 1.08996 * 109.47261 * 59.99820 * 10 9 8 34 34 H 1.08997 * 109.47161 * 299.99478 * 12 11 10 35 35 H 1.08997 * 109.47664 * 59.99845 * 12 11 10 36 36 H 0.97000 * 119.99611 * 179.97438 * 16 15 13 37 37 H 1.07991 * 120.00693 * 179.72595 * 21 6 5 38 38 H 1.08002 * 119.99354 * 180.22680 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0587 2.5147 0.0000 6 6 3.3033 3.6780 0.0005 7 8 3.9207 4.8896 0.0016 8 6 3.0808 6.0458 0.0015 9 6 3.9481 7.3061 0.0034 10 6 3.0489 8.5441 0.0040 11 16 4.0771 10.0385 0.0055 12 6 2.8524 11.3765 0.0068 13 6 3.5612 12.7064 0.0088 14 1 4.6406 12.7430 0.0096 15 6 2.8318 13.8764 0.0106 16 7 3.4505 15.0369 0.0118 17 14 0.9649 13.8132 0.0099 18 1 0.4697 13.7940 1.4097 19 1 0.4294 15.0094 -0.6883 20 1 0.5114 12.5858 -0.6925 21 6 1.9182 3.6056 0.0058 22 6 1.2911 2.3747 -0.0001 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 4.0196 0.3783 -0.0005 27 1 5.1372 2.5712 0.0000 28 1 2.4522 6.0381 -0.8889 29 1 2.4509 6.0372 0.8911 30 1 4.5765 7.3135 0.8941 31 1 4.5783 7.3149 -0.8859 32 1 2.4203 8.5369 -0.8864 33 1 2.4190 8.5351 0.8935 34 1 2.2281 11.2985 -0.8833 35 1 2.2279 11.2967 0.8966 36 1 2.9373 15.8601 0.0127 37 1 1.3301 4.5112 0.0107 38 1 0.2125 2.3183 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082693084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:57 Heat of formation + Delta-G solvation = -63.245648 kcal Electronic energy + Delta-G solvation = -18239.660566 eV Core-core repulsion = 15173.877845 eV Total energy + Delta-G solvation = -3065.782721 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67537 -39.27916 -36.75179 -33.87488 -33.06866 -31.49253 -29.68933 -29.38913 -27.50543 -26.63194 -23.40343 -22.57098 -22.09780 -21.23187 -18.73225 -17.93408 -16.94137 -16.79113 -16.47602 -16.03003 -15.52287 -15.09216 -14.76885 -14.50239 -14.22617 -13.94458 -13.67094 -13.34876 -13.04701 -12.87998 -12.62945 -12.47640 -12.24120 -12.12754 -11.91860 -11.59240 -11.08644 -10.94268 -10.83587 -10.52667 -10.42629 -10.05855 -9.67950 -9.39314 -9.02097 -8.74581 -8.01058 -6.86597 -6.20850 -4.23138 0.93967 1.18293 2.32555 2.93154 3.14026 3.18054 3.25681 3.25850 3.43669 3.62890 4.27659 4.39728 4.47347 4.69895 4.75683 4.76977 4.82782 4.91368 5.04022 5.07039 5.10054 5.14200 5.16577 5.27454 5.33212 5.56064 5.69172 5.74976 5.96729 5.99831 6.02676 6.16577 6.28072 6.53302 6.64944 6.98497 7.25055 7.39214 8.27450 8.82139 9.34567 10.91261 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036972 B = 0.002313 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.156556 B =12101.044362 C =12821.847339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.084 3.916 4 C -0.111 4.111 5 C -0.114 4.114 6 C 0.101 3.899 7 O -0.312 6.312 8 C 0.065 3.935 9 C -0.098 4.098 10 C -0.098 4.098 11 S -0.264 6.264 12 C 0.047 3.953 13 C -0.515 4.515 14 H 0.084 0.916 15 C 0.079 3.921 16 N -0.890 5.890 17 Si 0.879 3.121 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.267 1.267 21 C -0.171 4.171 22 C -0.167 4.167 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.099 0.901 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.030 0.970 36 H 0.268 0.732 37 H 0.132 0.868 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.656 -29.106 -0.037 29.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.040 3.960 4 C -0.130 4.130 5 C -0.132 4.132 6 C 0.056 3.944 7 O -0.226 6.226 8 C -0.012 4.012 9 C -0.137 4.137 10 C -0.247 4.247 11 S -0.037 6.037 12 C -0.100 4.100 13 C -0.554 4.554 14 H 0.102 0.898 15 C -0.126 4.126 16 N -0.528 5.528 17 Si 0.706 3.294 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.189 4.189 22 C -0.186 4.186 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.150 0.850 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.301 -28.950 -0.039 29.431 hybrid contribution -2.956 0.339 0.017 2.975 sum -8.256 -28.611 -0.022 29.779 Atomic orbital electron populations 1.23032 0.78571 1.03857 1.01282 1.86064 1.21184 1.26745 1.89388 1.18901 0.92339 0.84186 1.00597 1.20230 0.91308 0.97870 1.03568 1.20281 1.00411 0.88976 1.03555 1.18939 0.90947 0.85788 0.98765 1.86087 1.35958 1.11884 1.88698 1.22870 0.93479 0.83485 1.01381 1.21194 0.97971 0.89517 1.04975 1.23145 1.00820 0.96418 1.04271 1.86805 1.19207 0.99710 1.97942 1.21414 0.94670 0.94906 0.99033 1.20485 0.95576 0.86675 1.52638 0.89785 1.24868 0.98559 0.94962 0.94179 1.69867 1.35999 0.97430 1.49489 0.86795 0.85787 0.78082 0.78774 1.19896 1.20762 1.19150 1.21111 0.93522 0.98509 1.05808 1.21037 1.00007 0.91697 1.05864 0.92756 0.92748 0.88297 0.84506 0.84292 0.91939 0.91949 0.89900 0.89898 0.90676 0.90673 0.94726 0.95182 0.92198 0.85046 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.90 10.50 -19.65 -0.21 -3.11 16 3 C 0.08 0.82 6.69 -39.24 -0.26 0.56 16 4 C -0.11 -1.04 9.98 -39.45 -0.39 -1.43 16 5 C -0.11 -1.13 9.98 -39.45 -0.39 -1.52 16 6 C 0.10 1.13 6.69 -39.24 -0.26 0.86 16 7 O -0.31 -3.80 10.14 -19.70 -0.20 -4.00 16 8 C 0.06 0.70 4.74 37.16 0.18 0.88 16 9 C -0.10 -1.25 5.59 -26.73 -0.15 -1.40 16 10 C -0.10 -1.46 5.94 37.16 0.22 -1.24 16 11 S -0.26 -5.47 21.66 -107.50 -2.33 -7.80 16 12 C 0.05 1.14 4.77 36.01 0.17 1.31 16 13 C -0.51 -14.70 9.68 -34.44 -0.33 -15.03 16 14 H 0.08 2.64 7.96 -52.48 -0.42 2.22 16 15 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 16 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 17 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 21 C -0.17 -1.70 9.03 -39.45 -0.36 -2.05 16 22 C -0.17 -1.53 9.03 -39.45 -0.36 -1.88 16 23 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 24 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 25 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 27 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 29 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.03 0.81 7.20 -51.93 -0.37 0.44 16 35 H 0.03 0.70 7.57 -51.93 -0.39 0.30 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.13 1.12 6.29 -52.49 -0.33 0.79 16 38 H 0.13 0.89 6.29 -52.49 -0.33 0.56 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -31.60 332.96 -8.22 -39.82 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.56 Total: -2.34 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.05 Total: -17.66 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.41 Total: -7.11 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 16 Polarization: -5.47 SS G_CDS: -2.33 Total: -7.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.60 -8.22 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.425 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds