Wall clock time and date at job start Tue Mar 31 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99510 * 2 1 4 4 C 1.38698 * 119.99843 * 0.27494 * 3 2 1 5 5 C 1.38130 * 119.99507 * 180.24049 * 4 3 2 6 6 C 1.38701 * 119.99962 * 359.48187 * 5 4 3 7 7 O 1.35982 * 119.99934 * 180.28437 * 6 5 4 8 8 C 1.42904 * 117.00225 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47233 * 179.97438 * 8 7 6 10 10 S 1.81398 * 109.46911 * 179.97438 * 9 8 7 11 11 C 1.81400 * 102.99921 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47359 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47280 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99708 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99710 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99758 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00402 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46967 * 89.99856 * 17 15 13 19 19 H 1.48496 * 109.47448 * 209.99782 * 17 15 13 20 20 H 1.48506 * 109.47187 * 330.00038 * 17 15 13 21 21 C 1.38695 * 120.00147 * 0.26056 * 6 5 4 22 22 C 1.38135 * 119.99861 * 359.97438 * 21 6 5 23 23 H 1.08999 * 109.46872 * 60.00367 * 1 2 3 24 24 H 1.09002 * 109.46510 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47223 * 299.99870 * 1 2 3 26 26 H 1.07998 * 120.00070 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.00169 * 179.76649 * 5 4 3 28 28 H 1.09001 * 109.46663 * 299.99591 * 8 7 6 29 29 H 1.08995 * 109.47194 * 59.99069 * 8 7 6 30 30 H 1.09001 * 109.47144 * 299.99519 * 9 8 7 31 31 H 1.09004 * 109.47011 * 59.99539 * 9 8 7 32 32 H 1.09003 * 109.47433 * 300.00264 * 11 10 9 33 33 H 1.09006 * 109.47238 * 60.00169 * 11 10 9 34 34 H 1.08997 * 109.46821 * 300.00005 * 12 11 10 35 35 H 1.08993 * 109.46907 * 60.00004 * 12 11 10 36 36 H 0.97002 * 120.00253 * 179.97438 * 16 15 13 37 37 H 1.08005 * 120.00034 * 180.02562 * 21 6 5 38 38 H 1.08001 * 119.99636 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3749 0.0058 5 6 1.9178 3.6057 0.0007 6 6 3.3029 3.6783 0.0008 7 8 3.9202 4.8900 0.0017 8 6 5.3492 4.8901 0.0011 9 6 5.8591 6.3326 0.0017 10 16 7.6731 6.3327 0.0017 11 6 8.0811 8.1002 0.0015 12 6 9.6013 8.2728 0.0009 13 6 9.9402 9.7412 0.0014 14 1 9.1502 10.4777 0.0017 15 6 11.2587 10.1444 0.0015 16 7 11.5545 11.4258 0.0014 17 14 12.6250 8.8706 0.0018 18 1 12.9871 8.5329 -1.3982 19 1 13.8138 9.4198 0.7018 20 1 12.1601 7.6462 0.7019 21 6 4.0584 2.5152 0.0004 22 6 3.4313 1.2844 0.0006 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2123 2.3183 0.0098 27 1 1.3296 4.5114 0.0014 28 1 5.7129 4.3755 0.8906 29 1 5.7123 4.3770 -0.8893 30 1 5.4955 6.8469 -0.8880 31 1 5.4960 6.8460 0.8920 32 1 7.6621 8.5698 -0.8885 33 1 7.6621 8.5699 0.8915 34 1 10.0206 7.8032 0.8907 35 1 10.0199 7.8033 -0.8892 36 1 12.4821 11.7095 0.0019 37 1 5.1370 2.5718 0.0009 38 1 4.0196 0.3787 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082693292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:59 Heat of formation + Delta-G solvation = -61.067834 kcal Electronic energy + Delta-G solvation = -18169.044927 eV Core-core repulsion = 15103.356643 eV Total energy + Delta-G solvation = -3065.688284 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67477 -39.28290 -36.67976 -33.75860 -32.15010 -31.31310 -31.27267 -29.37129 -27.43962 -25.72359 -24.18183 -22.82318 -21.72954 -20.65138 -18.79395 -18.01343 -17.03142 -16.71325 -16.42625 -16.01643 -15.55492 -15.11486 -14.93283 -14.37927 -14.25361 -13.94028 -13.55717 -13.48945 -13.13901 -12.78176 -12.67723 -12.61888 -12.34234 -11.96549 -11.69570 -11.55129 -11.18321 -10.97679 -10.60884 -10.34783 -10.09467 -9.97380 -9.62406 -9.40668 -9.24683 -8.62356 -8.01620 -7.38724 -6.13060 -4.13548 0.93587 1.18085 1.71495 2.94049 2.97466 3.27025 3.28148 3.35634 3.40347 3.43306 4.38963 4.43049 4.48884 4.61558 4.72099 4.75331 4.75548 4.83457 5.00684 5.06652 5.14271 5.20788 5.32150 5.51094 5.52766 5.65834 5.72765 5.81943 5.93899 5.97692 6.05326 6.26066 6.47364 6.96557 7.06169 7.18481 7.22429 7.62411 8.39798 8.88283 9.47234 10.99566 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.061414 B = 0.002193 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.810049 B =12763.257032 C =13182.713689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.085 3.915 4 C -0.168 4.168 5 C -0.114 4.114 6 C 0.101 3.899 7 O -0.314 6.314 8 C 0.080 3.920 9 C -0.092 4.092 10 S -0.279 6.279 11 C -0.047 4.047 12 C 0.002 3.998 13 C -0.522 4.522 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.879 3.121 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 C -0.168 4.168 22 C -0.110 4.110 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.265 0.735 37 H 0.138 0.862 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.951 -21.345 0.024 30.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.041 3.959 4 C -0.187 4.187 5 C -0.133 4.133 6 C 0.056 3.944 7 O -0.228 6.228 8 C 0.004 3.996 9 C -0.241 4.241 10 S -0.052 6.052 11 C -0.195 4.195 12 C -0.037 4.037 13 C -0.562 4.562 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.706 3.294 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.187 4.187 22 C -0.128 4.128 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.151 0.849 27 H 0.152 0.848 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.155 0.845 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.134 -22.085 0.027 30.568 hybrid contribution -0.132 0.574 -0.023 0.589 sum -21.266 -21.511 0.005 30.248 Atomic orbital electron populations 1.23035 0.78573 1.03871 1.01281 1.86077 1.21190 1.26733 1.89375 1.18901 0.92278 0.84240 1.00511 1.21037 1.00017 0.91400 1.06238 1.20224 0.91445 0.98058 1.03530 1.18893 0.92167 0.84343 0.99044 1.86056 1.21246 1.26642 1.88889 1.22437 0.77915 0.96728 1.02561 1.23117 0.96256 0.98428 1.06263 1.86720 1.02582 1.17660 1.98215 1.23521 1.03532 0.88052 1.04350 1.19380 0.88146 0.98468 0.97668 1.20942 0.93558 0.89617 1.52074 0.90769 1.24962 0.98695 0.95244 0.94195 1.69895 1.19009 1.14422 1.50331 0.86779 0.81612 0.82260 0.78762 1.20059 1.21169 1.18787 1.21172 1.00535 0.91381 1.05578 1.20226 0.91378 0.98094 1.03134 0.92713 0.88322 0.92722 0.84865 0.84805 0.91025 0.91030 0.89237 0.89239 0.90485 0.90457 0.95472 0.95912 0.92490 0.84463 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.91 10.50 -19.72 -0.21 -3.11 16 3 C 0.09 0.83 6.69 -39.24 -0.26 0.57 16 4 C -0.17 -1.47 9.03 -39.45 -0.36 -1.83 16 5 C -0.11 -1.12 9.98 -39.45 -0.39 -1.52 16 6 C 0.10 1.14 6.69 -39.24 -0.26 0.88 16 7 O -0.31 -3.84 10.14 -19.68 -0.20 -4.04 16 8 C 0.08 0.92 4.75 37.16 0.18 1.10 16 9 C -0.09 -1.21 6.31 37.16 0.23 -0.98 16 10 S -0.28 -4.66 21.74 -107.50 -2.34 -7.00 16 11 C -0.05 -0.92 5.88 37.16 0.22 -0.70 16 12 C 0.00 0.06 4.05 -27.88 -0.11 -0.06 16 13 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 16 14 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 17 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 21 C -0.17 -1.72 9.03 -39.45 -0.36 -2.08 16 22 C -0.11 -1.08 9.98 -39.45 -0.39 -1.47 16 23 H 0.05 0.23 7.67 -51.93 -0.40 -0.17 16 24 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.23 7.65 -51.93 -0.40 -0.17 16 26 H 0.13 0.82 6.29 -52.49 -0.33 0.49 16 27 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.07 0.79 7.66 -51.93 -0.40 0.39 16 29 H 0.07 0.79 7.66 -51.93 -0.40 0.39 16 30 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 31 H 0.09 1.15 8.14 -51.92 -0.42 0.72 16 32 H 0.08 1.47 8.14 -51.92 -0.42 1.04 16 33 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 34 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 35 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.14 1.24 6.29 -52.48 -0.33 0.91 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 333.00 15.07 5.02 5.02 Total: -1.00 -31.14 333.00 -8.13 -39.28 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.56 Total: -2.54 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -0.95 Total: -17.95 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.41 Total: -7.16 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -2.34 Total: -7.00 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.14 -8.13 -39.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.791 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds