Wall clock time and date at job start Tue Mar 31 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 S 1.81397 * 109.47235 * 2 1 4 4 O 1.42105 * 110.54275 * 68.37271 * 3 2 1 5 5 O 1.42101 * 110.54298 * 291.62373 * 3 2 1 6 6 C 1.76193 * 104.44909 * 179.97438 * 3 2 1 7 7 C 1.38238 * 119.99881 * 269.72381 * 6 3 2 8 8 C 1.38237 * 119.99927 * 179.76317 * 7 6 3 9 9 C 1.38242 * 119.99906 * 0.49405 * 8 7 6 10 10 C 1.50703 * 120.00120 * 179.76522 * 9 8 7 11 11 C 1.53003 * 109.46926 * 270.02073 * 10 9 8 12 12 C 1.52998 * 109.46687 * 180.02562 * 11 10 9 13 13 C 1.50709 * 109.46821 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99644 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99834 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99813 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99620 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47329 * 60.00515 * 17 15 13 19 19 H 1.48506 * 109.46735 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47346 * 299.99792 * 17 15 13 21 21 C 1.38241 * 119.99785 * 359.78306 * 9 8 7 22 22 C 1.38230 * 120.00132 * 359.95950 * 21 9 8 23 23 H 1.09000 * 109.46805 * 60.00123 * 1 2 3 24 24 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47216 * 300.00010 * 1 2 3 26 26 H 1.09004 * 109.47149 * 240.00025 * 2 1 3 27 27 H 1.09000 * 109.46805 * 119.99877 * 2 1 3 28 28 H 1.07994 * 120.00275 * 0.02562 * 7 6 3 29 29 H 1.07998 * 120.00614 * 180.25201 * 8 7 6 30 30 H 1.09002 * 109.46800 * 30.02132 * 10 9 8 31 31 H 1.08998 * 109.46732 * 150.02068 * 10 9 8 32 32 H 1.09002 * 109.46993 * 299.99983 * 11 10 9 33 33 H 1.08998 * 109.46982 * 60.00107 * 11 10 9 34 34 H 1.09002 * 109.47228 * 299.99640 * 12 11 10 35 35 H 1.08999 * 109.47713 * 59.99718 * 12 11 10 36 36 H 0.97000 * 119.99596 * 179.97438 * 16 15 13 37 37 H 1.07997 * 119.99747 * 179.97438 * 21 9 8 38 38 H 1.07998 * 119.99877 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8387 2.3438 -1.2370 6 6 3.8899 1.5559 0.0008 7 6 4.5785 1.5014 1.1982 8 6 5.9551 1.3754 1.1989 9 6 6.6441 1.3143 0.0020 10 6 8.1453 1.1823 0.0026 11 6 8.7797 2.5746 0.0027 12 6 10.3038 2.4405 0.0028 13 6 10.9287 3.8120 0.0022 14 1 10.3014 4.6911 0.0015 15 6 12.3011 3.9442 0.0027 16 7 13.0648 2.8735 0.0041 17 14 13.0755 5.6441 0.0013 18 1 12.6433 6.3859 1.2130 19 1 14.5549 5.5140 0.0015 20 1 12.6443 6.3835 -1.2120 21 6 5.9560 1.3747 -1.1955 22 6 4.5790 1.4953 -1.1961 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.0405 1.5528 2.1333 29 1 6.4927 1.3286 2.1344 30 1 8.4618 0.6387 0.8928 31 1 8.4626 0.6385 -0.8872 32 1 8.4631 3.1182 -0.8874 33 1 8.4624 3.1183 0.8925 34 1 10.6207 1.8968 0.8927 35 1 10.6208 1.8969 -0.8872 36 1 14.0303 2.9666 0.0040 37 1 6.4944 1.3273 -2.1305 38 1 4.0415 1.5428 -2.1316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098128861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:20 Heat of formation + Delta-G solvation = -72.481056 kcal Electronic energy + Delta-G solvation = -19052.935886 eV Core-core repulsion = 15986.752687 eV Total energy + Delta-G solvation = -3066.183199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.42923 -37.27540 -36.12461 -34.95449 -33.56761 -32.79421 -31.07952 -30.59814 -27.09099 -24.57245 -23.80358 -22.89927 -21.51561 -20.14943 -19.14837 -18.03344 -16.59280 -16.39903 -16.32125 -15.39828 -15.29660 -14.56656 -14.53943 -14.37484 -13.84067 -13.72107 -13.45669 -13.23985 -12.91442 -12.58362 -12.26451 -12.16168 -12.11531 -11.99292 -11.81430 -11.58189 -11.11368 -11.05101 -10.80389 -10.77405 -10.68869 -10.48036 -9.76302 -9.51674 -9.21642 -9.06838 -8.83992 -8.37321 -6.02649 -4.05154 -0.16710 0.80855 1.28591 2.69594 3.32433 3.35503 3.36565 3.39752 3.75671 3.86256 4.21139 4.38882 4.44247 4.72933 4.75311 4.83822 4.91842 5.11431 5.24861 5.32567 5.33030 5.34780 5.47089 5.62017 5.66543 5.91088 5.94356 6.03002 6.12925 6.27636 6.40758 6.73735 6.78174 6.83880 7.05085 7.63096 7.76247 7.96775 8.39362 9.01599 9.59181 11.08602 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041459 B = 0.002794 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.200824 B =10018.893969 C =10205.772734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.610 4.610 3 S 2.499 3.501 4 O -0.939 6.939 5 O -0.939 6.939 6 C -0.676 4.676 7 C -0.023 4.023 8 C -0.141 4.141 9 C -0.006 4.006 10 C -0.095 4.095 11 C -0.103 4.103 12 C 0.022 3.978 13 C -0.522 4.522 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.141 4.141 22 C -0.023 4.023 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.261 0.739 37 H 0.133 0.867 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.486 -9.550 -0.006 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.740 4.740 3 S 2.680 3.320 4 O -0.937 6.937 5 O -0.937 6.937 6 C -0.764 4.764 7 C -0.042 4.042 8 C -0.160 4.160 9 C -0.007 4.007 10 C -0.132 4.132 11 C -0.141 4.141 12 C -0.015 4.015 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.160 4.160 22 C -0.042 4.042 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.151 0.849 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.766 -8.845 -0.006 25.359 hybrid contribution 1.289 0.202 -0.002 1.305 sum -22.477 -8.644 -0.007 24.082 Atomic orbital electron populations 1.21560 0.90425 1.05147 1.03689 1.30220 1.06938 1.24698 1.12095 1.05301 0.74567 0.77469 0.74680 1.93565 1.83649 1.71911 1.44543 1.93565 1.83644 1.71908 1.44547 1.30278 1.24943 1.21479 0.99686 1.20887 0.94900 0.92115 0.96314 1.21263 0.93947 1.02278 0.98516 1.20631 0.97209 0.89868 0.92955 1.20996 0.88303 1.00707 1.03224 1.21649 0.99194 0.92449 1.00815 1.19111 0.87976 0.97149 0.97283 1.21217 0.91438 0.92672 1.50728 0.92744 1.25022 0.97449 0.96697 0.95272 1.69950 1.04530 1.28285 1.50788 0.86649 0.78039 0.84592 0.78682 1.20209 1.21263 1.20216 1.21260 0.93945 1.02284 0.98509 1.20886 0.94897 0.92139 0.96313 0.90790 0.89846 0.90783 0.84681 0.84680 0.84433 0.84901 0.90734 0.90736 0.93084 0.93081 0.96528 0.96532 0.92923 0.84903 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.92 37.16 0.37 -0.41 16 2 C -0.61 -3.42 6.70 37.16 0.25 -3.17 16 3 S 2.50 24.65 5.16 -107.50 -0.55 24.09 16 4 O -0.94 -11.98 17.12 -57.54 -0.98 -12.96 16 5 O -0.94 -11.98 17.13 -57.54 -0.99 -12.96 16 6 C -0.68 -7.78 5.66 -39.58 -0.22 -8.00 16 7 C -0.02 -0.28 9.47 -39.58 -0.37 -0.65 16 8 C -0.14 -1.84 9.70 -39.58 -0.38 -2.23 16 9 C -0.01 -0.09 5.13 -104.62 -0.54 -0.63 16 10 C -0.10 -1.51 5.34 -27.88 -0.15 -1.66 16 11 C -0.10 -2.08 5.14 -26.73 -0.14 -2.21 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 17 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.14 -1.84 9.70 -39.58 -0.38 -2.22 16 22 C -0.02 -0.28 9.47 -39.58 -0.37 -0.65 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.14 1.35 7.56 -52.49 -0.40 0.95 16 29 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 31 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.14 1.34 7.57 -52.49 -0.40 0.94 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -35.09 336.08 -10.07 -45.16 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -5.83 Total: -4.02 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: -2.50 Total: -35.00 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.97 Total: -25.92 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 24.65 SS G_CDS: -0.55 Total: 24.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.09 -10.07 -45.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098128861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.320 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds