Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47433 * 2 1 4 4 C 1.35893 * 117.00392 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05957 * 180.02562 * 4 3 2 6 6 C 1.38138 * 119.94337 * 180.30421 * 5 4 3 7 7 C 1.38271 * 120.05803 * 359.41293 * 6 5 4 8 8 S 1.76199 * 119.94634 * 180.30266 * 7 6 5 9 9 O 1.42101 * 102.99776 * 24.15451 * 8 7 6 10 10 C 1.81402 * 103.00137 * 270.30511 * 8 7 6 11 11 C 1.53000 * 109.47049 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47225 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47347 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99789 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00044 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99972 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99969 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46972 * 90.00038 * 17 15 13 19 19 H 1.48501 * 109.47081 * 209.99873 * 17 15 13 20 20 H 1.48495 * 109.47169 * 330.00245 * 17 15 13 21 21 C 1.38259 * 120.10889 * 0.60974 * 7 6 5 22 22 C 1.38146 * 120.05909 * 359.67363 * 21 7 6 23 23 H 1.09001 * 109.46536 * 59.99754 * 1 2 3 24 24 H 1.08995 * 109.46775 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46893 * 300.00316 * 1 2 3 26 26 H 1.09002 * 109.47184 * 240.00253 * 2 1 3 27 27 H 1.09001 * 109.46987 * 119.99960 * 2 1 3 28 28 H 1.08002 * 120.02291 * 0.02562 * 5 4 3 29 29 H 1.08004 * 119.96766 * 179.69880 * 6 5 4 30 30 H 1.08993 * 109.47056 * 299.99786 * 10 8 7 31 31 H 1.09001 * 109.47120 * 59.99769 * 10 8 7 32 32 H 1.09000 * 109.47467 * 299.99779 * 11 10 8 33 33 H 1.09001 * 109.47247 * 59.99970 * 11 10 8 34 34 H 1.09000 * 109.46621 * 300.00179 * 12 11 10 35 35 H 1.09001 * 109.47128 * 59.99780 * 12 11 10 36 36 H 0.97000 * 119.99822 * 179.97438 * 16 15 13 37 37 H 1.08006 * 119.97147 * 179.69573 * 21 7 6 38 38 H 1.07993 * 120.03340 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8068 0.0011 6 6 5.2551 2.9850 -0.0047 7 6 6.0963 1.8877 0.0012 8 16 7.8431 2.1185 0.0018 9 8 7.9939 3.4154 0.5626 10 6 8.2482 2.1731 -1.7655 11 6 9.7553 2.3730 -1.9374 12 6 10.0969 2.4197 -3.4280 13 6 11.5815 2.6160 -3.5973 14 1 12.2176 2.6995 -2.7286 15 6 12.1275 2.6889 -4.8612 16 7 11.3528 2.5867 -5.9191 17 14 13.9675 2.9329 -5.0710 18 1 14.6391 1.6096 -5.1273 19 1 14.2281 3.6742 -6.3312 20 1 14.4982 3.7088 -3.9215 21 6 5.5690 0.6096 0.0002 22 6 4.1998 0.4259 0.0001 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.2285 3.6642 0.0015 29 1 5.6693 3.9825 -0.0092 30 1 7.9496 1.2363 -2.2358 31 1 7.7164 3.0008 -2.2348 32 1 10.0535 3.3101 -1.4672 33 1 10.2874 1.5456 -1.4681 34 1 9.7986 1.4829 -3.8986 35 1 9.5648 3.2474 -3.8970 36 1 11.7370 2.6384 -6.8083 37 1 6.2282 -0.2460 -0.0002 38 1 3.7885 -0.5727 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108048647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = -71.543314 kcal Electronic energy + Delta-G solvation = -18737.605371 eV Core-core repulsion = 15671.462835 eV Total energy + Delta-G solvation = -3066.142535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.34280 -37.69476 -35.42954 -34.38851 -32.38418 -31.98709 -31.11451 -29.76647 -27.44464 -24.44812 -23.49157 -22.80402 -21.89551 -20.27893 -18.64732 -17.74035 -16.47939 -16.42220 -16.24699 -15.91421 -14.84491 -14.63960 -14.53124 -14.26930 -13.90655 -13.67912 -13.64100 -13.20981 -12.68113 -12.43626 -12.33236 -12.19025 -12.01356 -11.90597 -11.31735 -11.13464 -11.05920 -10.84460 -10.74947 -10.64842 -10.13208 -9.76302 -9.30246 -9.19155 -9.06806 -8.67311 -8.34225 -7.97192 -5.99082 -4.01759 0.91427 1.18372 2.07361 2.82607 2.97721 3.33007 3.39232 3.43379 3.55185 4.14412 4.46417 4.47259 4.50248 4.63196 4.71308 4.82569 5.06570 5.18241 5.29581 5.35857 5.36547 5.45670 5.58168 5.61214 5.68922 5.81723 5.87128 6.07633 6.21794 6.25347 6.55131 6.55761 6.74907 7.07509 7.11371 7.68116 7.81118 8.00723 8.42266 9.05464 9.62370 11.12173 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031440 B = 0.002831 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.371901 B = 9889.494556 C =10382.987761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.316 6.316 4 C 0.157 3.843 5 C -0.169 4.169 6 C -0.014 4.014 7 C -0.491 4.491 8 S 1.313 4.687 9 O -0.859 6.859 10 C -0.438 4.438 11 C -0.093 4.093 12 C 0.026 3.974 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.005 4.005 22 C -0.227 4.227 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.140 0.860 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.032 -9.810 13.794 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.230 6.230 4 C 0.111 3.889 5 C -0.189 4.189 6 C -0.033 4.033 7 C -0.586 4.586 8 S 1.513 4.487 9 O -0.855 6.855 10 C -0.576 4.576 11 C -0.132 4.132 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.024 4.024 22 C -0.247 4.247 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.158 0.842 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.626 -9.565 14.412 25.419 hybrid contribution -0.313 1.540 -1.515 2.183 sum -18.939 -8.026 12.897 24.278 Atomic orbital electron populations 1.21782 0.92647 1.02950 1.03582 1.22834 0.95966 0.81810 1.01666 1.86081 1.19192 1.29646 1.88093 1.19141 0.82118 0.94354 0.93298 1.20518 0.95379 0.94909 1.08059 1.20992 0.92124 0.99084 0.91147 1.27859 1.19781 0.97211 1.13791 1.69268 0.83304 1.07083 0.89080 1.93071 1.80592 1.42215 1.69633 1.27786 1.05032 1.07288 1.17523 1.21312 0.88863 1.00747 1.02301 1.19093 0.96200 0.97352 0.88540 1.21284 0.93047 1.49543 0.92132 0.92509 1.25038 0.98044 0.95371 0.96088 1.69972 1.35028 1.50665 0.97923 0.86581 0.85582 0.78224 0.77556 1.20584 1.21275 1.19832 1.20676 0.94255 0.95751 0.91686 1.21328 0.94667 0.97960 1.10759 0.91463 0.90235 0.91518 0.91733 0.91807 0.85181 0.84856 0.87168 0.90038 0.92922 0.92081 0.96291 0.96756 0.93014 0.84212 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.37 5.46 37.16 0.20 0.57 16 3 O -0.32 -3.42 10.14 -19.40 -0.20 -3.62 16 4 C 0.16 1.85 6.69 -39.21 -0.26 1.59 16 5 C -0.17 -2.18 9.99 -39.43 -0.39 -2.58 16 6 C -0.01 -0.21 9.44 -39.61 -0.37 -0.58 16 7 C -0.49 -6.30 5.61 -39.56 -0.22 -6.52 16 8 S 1.31 17.55 13.54 -107.50 -1.46 16.09 16 9 O -0.86 -16.62 16.90 -35.23 -0.60 -17.22 16 10 C -0.44 -7.22 5.88 37.16 0.22 -7.00 16 11 C -0.09 -1.90 5.16 -26.73 -0.14 -2.04 16 12 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 13 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 17 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.00 -0.05 9.75 -39.61 -0.39 -0.43 16 22 C -0.23 -2.29 9.04 -39.43 -0.36 -2.65 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 27 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.13 2.04 7.46 -52.48 -0.39 1.64 16 30 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -37.13 336.08 -9.06 -46.18 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.71 Total: -3.56 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: -1.88 Total: -33.23 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.79 Total: -20.83 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 17.55 SS G_CDS: -1.46 Total: 16.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.13 -9.06 -46.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108048647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.358 kcal (2) G-P(sol) polarization free energy of solvation -37.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds