Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47433 * 2 1 4 4 C 1.35893 * 117.00392 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05957 * 180.02562 * 4 3 2 6 6 C 1.38138 * 119.94337 * 180.30421 * 5 4 3 7 7 C 1.38271 * 120.05803 * 359.41293 * 6 5 4 8 8 S 1.76199 * 119.94634 * 180.30266 * 7 6 5 9 9 O 1.42101 * 102.99776 * 24.15451 * 8 7 6 10 10 C 1.81402 * 103.00137 * 270.30511 * 8 7 6 11 11 C 1.53000 * 109.47049 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47225 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47347 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99789 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00044 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99972 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99969 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46972 * 90.00038 * 17 15 13 19 19 H 1.48501 * 109.47081 * 209.99873 * 17 15 13 20 20 H 1.48495 * 109.47169 * 330.00245 * 17 15 13 21 21 C 1.38259 * 120.10889 * 0.60974 * 7 6 5 22 22 C 1.38146 * 120.05909 * 359.67363 * 21 7 6 23 23 H 1.09001 * 109.46536 * 59.99754 * 1 2 3 24 24 H 1.08995 * 109.46775 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46893 * 300.00316 * 1 2 3 26 26 H 1.09002 * 109.47184 * 240.00253 * 2 1 3 27 27 H 1.09001 * 109.46987 * 119.99960 * 2 1 3 28 28 H 1.08002 * 120.02291 * 0.02562 * 5 4 3 29 29 H 1.08004 * 119.96766 * 179.69880 * 6 5 4 30 30 H 1.08993 * 109.47056 * 299.99786 * 10 8 7 31 31 H 1.09001 * 109.47120 * 59.99769 * 10 8 7 32 32 H 1.09000 * 109.47467 * 299.99779 * 11 10 8 33 33 H 1.09001 * 109.47247 * 59.99970 * 11 10 8 34 34 H 1.09000 * 109.46621 * 300.00179 * 12 11 10 35 35 H 1.09001 * 109.47128 * 59.99780 * 12 11 10 36 36 H 0.97000 * 119.99822 * 179.97438 * 16 15 13 37 37 H 1.08006 * 119.97147 * 179.69573 * 21 7 6 38 38 H 1.07993 * 120.03340 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8068 0.0011 6 6 5.2551 2.9850 -0.0047 7 6 6.0963 1.8877 0.0012 8 16 7.8431 2.1185 0.0018 9 8 7.9939 3.4154 0.5626 10 6 8.2482 2.1731 -1.7655 11 6 9.7553 2.3730 -1.9374 12 6 10.0969 2.4197 -3.4280 13 6 11.5815 2.6160 -3.5973 14 1 12.2176 2.6995 -2.7286 15 6 12.1275 2.6889 -4.8612 16 7 11.3528 2.5867 -5.9191 17 14 13.9675 2.9329 -5.0710 18 1 14.6391 1.6096 -5.1273 19 1 14.2281 3.6742 -6.3312 20 1 14.4982 3.7088 -3.9215 21 6 5.5690 0.6096 0.0002 22 6 4.1998 0.4259 0.0001 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.2285 3.6642 0.0015 29 1 5.6693 3.9825 -0.0092 30 1 7.9496 1.2363 -2.2358 31 1 7.7164 3.0008 -2.2348 32 1 10.0535 3.3101 -1.4672 33 1 10.2874 1.5456 -1.4681 34 1 9.7986 1.4829 -3.8986 35 1 9.5648 3.2474 -3.8970 36 1 11.7370 2.6384 -6.8083 37 1 6.2282 -0.2460 -0.0002 38 1 3.7885 -0.5727 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108048647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = -96.482244 kcal Electronic energy + Delta-G solvation = -18738.686804 eV Core-core repulsion = 15671.462835 eV Total energy + Delta-G solvation = -3067.223968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.15761 -38.53014 -36.83113 -36.28391 -33.99874 -32.97611 -31.98034 -30.61349 -29.36096 -25.39802 -25.08735 -23.77719 -22.68776 -22.02692 -19.47062 -18.86446 -18.42056 -17.32682 -17.10781 -16.96334 -16.50149 -16.13261 -15.72038 -15.65913 -14.72924 -14.53074 -14.41278 -14.31971 -14.24198 -13.76795 -13.65367 -13.26103 -13.07482 -12.98560 -12.70887 -12.67679 -12.47921 -12.44164 -11.82492 -11.80941 -11.72467 -11.56606 -11.29185 -10.84429 -10.55407 -10.09096 -9.66483 -9.17727 -8.19981 -6.31698 -0.06915 0.29105 0.98191 1.40600 1.42600 1.53674 1.84543 2.14559 2.41688 2.60009 2.98189 3.12860 3.74580 3.84179 4.05797 4.09547 4.12270 4.22568 4.29826 4.34925 4.38629 4.54225 4.64690 4.78790 4.89154 4.92886 4.96446 4.99085 5.17208 5.19207 5.22890 5.26233 5.28934 5.51548 5.68620 5.71571 5.84687 6.23751 6.34231 6.85752 7.37831 8.91720 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031440 B = 0.002831 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.371901 B = 9889.494556 C =10382.987761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.333 6.333 4 C 0.155 3.845 5 C -0.189 4.189 6 C -0.039 4.039 7 C -0.510 4.510 8 S 1.403 4.597 9 O -0.921 6.921 10 C -0.447 4.447 11 C -0.088 4.088 12 C 0.026 3.974 13 C -0.545 4.545 14 H 0.064 0.936 15 C -0.004 4.004 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.008 3.992 22 C -0.223 4.223 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.108 0.892 30 H 0.137 0.863 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.094 0.906 34 H 0.007 0.993 35 H -0.025 1.025 36 H 0.263 0.737 37 H 0.190 0.810 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.083 -12.793 14.884 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.033 4.033 3 O -0.247 6.247 4 C 0.108 3.892 5 C -0.209 4.209 6 C -0.059 4.059 7 C -0.608 4.608 8 S 1.603 4.397 9 O -0.917 6.917 10 C -0.583 4.583 11 C -0.126 4.126 12 C -0.012 4.012 13 C -0.583 4.583 14 H 0.082 0.918 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.011 4.011 22 C -0.243 4.243 23 H 0.077 0.923 24 H 0.122 0.878 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.155 0.845 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.112 0.888 34 H 0.025 0.975 35 H -0.007 1.007 36 H 0.072 0.928 37 H 0.207 0.793 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -18.660 -12.547 15.497 27.309 hybrid contribution -0.522 2.405 -1.836 3.070 sum -19.181 -10.142 13.661 25.640 Atomic orbital electron populations 1.21826 0.91657 1.04352 1.02994 1.23203 0.96854 0.80221 1.03062 1.86080 1.18604 1.32269 1.87716 1.19299 0.83055 0.94358 0.92460 1.20570 0.94956 0.96167 1.09183 1.20922 0.93195 0.98656 0.93100 1.27689 1.18626 0.98377 1.16096 1.68461 0.82874 1.03711 0.84690 1.92940 1.82746 1.45314 1.70688 1.27868 1.01957 1.07511 1.20963 1.21136 0.92152 1.01153 0.98200 1.19030 0.94965 0.94999 0.92219 1.21770 0.94420 1.49471 0.92677 0.91787 1.26033 1.03463 0.94864 0.95740 1.70109 1.37394 1.51590 0.98509 0.85419 0.79129 0.78785 0.77561 1.18961 1.21067 1.18980 1.21264 0.95188 0.95749 0.88921 1.21773 0.94431 0.99015 1.09053 0.92254 0.87799 0.91950 0.90499 0.90051 0.85220 0.87437 0.84454 0.92888 0.94828 0.88802 0.97479 1.00662 0.92791 0.79253 0.81386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 71.98 0.74 -0.54 16 2 C 0.04 0.45 5.46 71.98 0.39 0.84 16 3 O -0.33 -6.65 10.14 -92.34 -0.94 -7.58 16 4 C 0.15 3.41 6.69 22.51 0.15 3.56 16 5 C -0.19 -4.98 9.99 22.37 0.22 -4.75 16 6 C -0.04 -1.16 9.44 22.25 0.21 -0.95 16 7 C -0.51 -12.46 5.61 22.28 0.13 -12.34 16 8 S 1.40 36.16 13.54 -56.49 -0.77 35.39 16 9 O -0.92 -36.37 16.90 -148.98 -2.52 -38.89 16 10 C -0.45 -14.68 5.88 71.98 0.42 -14.26 16 11 C -0.09 -3.61 5.16 30.59 0.16 -3.45 16 12 C 0.03 1.41 4.97 29.85 0.15 1.55 16 13 C -0.55 -31.58 9.11 25.60 0.23 -31.35 16 14 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 15 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 16 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 17 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 C 0.01 0.12 9.75 22.25 0.22 0.34 16 22 C -0.22 -3.67 9.04 22.37 0.20 -3.46 16 23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.10 0.37 8.14 -2.39 -0.02 0.36 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.08 0.68 7.66 -2.39 -0.02 0.66 16 27 H 0.08 0.63 7.66 -2.39 -0.02 0.61 16 28 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.11 3.61 7.46 -2.91 -0.02 3.59 16 30 H 0.14 3.68 8.14 -2.39 -0.02 3.67 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 35 H -0.03 -1.52 8.14 -2.39 -0.02 -1.54 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.17 1.50 6.30 -2.91 -0.02 1.48 16 Total: -1.00 -84.31 336.08 2.81 -81.50 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.03 Total: 5.02 kcal Atomic # 6 Polarization: -68.24 SS G_CDS: 3.69 Total: -64.55 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.28 Total: -57.66 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -3.45 Total: -46.48 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 36.16 SS G_CDS: -0.77 Total: 35.39 kcal Total: -84.31 2.81 -81.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108048647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.978 kcal (2) G-P(sol) polarization free energy of solvation -84.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds